data_8CLB
#
_model_server_result.job_id            '_aTxXr2fixfB6cylkLEb-Q' 
_model_server_result.datetime_utc      '2024-11-05 10:46:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8clb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"R","auth_seq_id":503}' 
#
_entry.id    8CLB 
#
_exptl.entry_id    8CLB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              399.437 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8CLB 
_cell.length_a            106.71 
_cell.length_b            160.61 
_cell.length_c            180.73 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CLB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 L N N 
? 9 R N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.729 ? 
metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? 
metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.22 ? 
metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.776 ? 
metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? 
metalc ? metalc8 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? 
metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc10 H MG MG . A MG 502 1_555 T O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc11 H MG MG . A MG 502 1_555 T O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? 
metalc ? metalc12 B OE1 GLN 11 B GLN 11 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.662 ? 
metalc ? metalc13 B OD2 ASP 177 B ASP 179 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.821 ? 
metalc ? metalc14 J O1A GDP . B GDP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? 
metalc ? metalc15 K MG MG . B MG 502 1_555 U O HOH . B HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? 
metalc ? metalc16 C OD1 ASP 39 C ASP 39 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.544 ? 
metalc ? metalc17 C OD2 ASP 39 C ASP 39 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc18 C O THR 41 C THR 41 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.631 ? 
metalc ? metalc19 C OG1 THR 41 C THR 41 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? 
metalc ? metalc20 C O GLY 44 C GLY 44 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc21 C OE1 GLU 55 C GLU 55 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? 
metalc ? metalc22 C OE2 GLU 55 C GLU 55 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc23 M O1G GTP . C GTP 501 1_555 N MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc24 M O1B GTP . C GTP 501 1_555 N MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? 
metalc ? metalc25 N MG MG . C MG 502 1_555 V O HOH . C HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.821 ? 
metalc ? metalc26 D OE1 GLN 11 D GLN 11 1_555 Q MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.771 ? 
metalc ? metalc27 P O1A GDP . D GDP 501 1_555 Q MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.744 ? 
#
_chem_comp.formula           'C22 H25 N O6' 
_chem_comp.formula_weight    399.437 
_chem_comp.id                LOC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-[(7S)-1,2,3,10-tetramethoxy-9-oxo-6,7-dihydro-5H-benzo[d]heptalen-7-yl]ethanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     COLCHICINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 C12 LOC doub 340 n n 
C12 C13 LOC sing 341 n n 
C12 N1 LOC sing 342 n n 
N1 C11 LOC sing 343 n n 
C11 C14 LOC sing 344 n n 
C11 C10 LOC sing 345 n n 
C14 C15 LOC doub 346 n n 
C14 C21 LOC sing 347 n n 
C15 C16 LOC sing 348 n n 
C10 C9 LOC sing 349 n n 
C9 C8 LOC sing 350 n n 
C8 C7 LOC doub 351 n y 
C8 C22 LOC sing 352 n y 
C7 C5 LOC sing 353 n y 
C5 C3 LOC doub 354 n y 
C5 O3 LOC sing 355 n n 
C3 C1 LOC sing 356 n y 
C3 O2 LOC sing 357 n n 
C1 O1 LOC sing 358 n n 
C1 C22 LOC doub 359 n y 
O1 C2 LOC sing 360 n n 
O2 C4 LOC sing 361 n n 
O3 C6 LOC sing 362 n n 
C22 C21 LOC sing 363 n n 
C21 C20 LOC doub 364 n n 
C20 C19 LOC sing 365 n n 
C19 C17 LOC doub 366 n n 
C17 C16 LOC sing 367 n n 
C17 O6 LOC sing 368 n n 
C16 O5 LOC doub 369 n n 
O6 C18 LOC sing 370 n n 
C13 H13 LOC sing 371 n n 
C13 H13A LOC sing 372 n n 
C13 H13B LOC sing 373 n n 
N1 HN1 LOC sing 374 n n 
C11 H11 LOC sing 375 n n 
C15 H15 LOC sing 376 n n 
C10 H10 LOC sing 377 n n 
C10 H10A LOC sing 378 n n 
C9 H9 LOC sing 379 n n 
C9 H9A LOC sing 380 n n 
C7 H7 LOC sing 381 n n 
C2 H2 LOC sing 382 n n 
C2 H2A LOC sing 383 n n 
C2 H2B LOC sing 384 n n 
C4 H4 LOC sing 385 n n 
C4 H4A LOC sing 386 n n 
C4 H4B LOC sing 387 n n 
C6 H6 LOC sing 388 n n 
C6 H6A LOC sing 389 n n 
C6 H6B LOC sing 390 n n 
C20 H20 LOC sing 391 n n 
C19 H19 LOC sing 392 n n 
C18 H18 LOC sing 393 n n 
C18 H18A LOC sing 394 n n 
C18 H18B LOC sing 395 n n 
#
_atom_sites.entry_id                     8CLB 
_atom_sites.fract_transf_matrix[1][1]    0.009371 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006226 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005533 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 GTP A 1 501 501 GTP GTP . 
H 6 MG A 1 502 502 MG MG . 
I 7 CA A 1 503 503 CA CA . 
J 8 GDP B 1 501 504 GDP GDP . 
K 6 MG B 1 502 505 MG MG . 
L 9 LOC B 1 503 506 LOC LOC . 
M 5 GTP C 1 501 507 GTP GTP . 
N 6 MG C 1 502 508 MG MG . 
O 7 CA C 1 503 513 CA CA . 
P 8 GDP D 1 501 509 GDP GDP . 
Q 6 MG D 1 502 510 MG MG . 
R 9 LOC D 1 503 511 LOC LOC . 
S 10 ACP F 1 401 512 ACP ACP . 
T 11 HOH A 1 601 40 HOH HOH . 
T 11 HOH A 2 602 34 HOH HOH . 
T 11 HOH A 3 603 19 HOH HOH . 
T 11 HOH A 4 604 22 HOH HOH . 
T 11 HOH A 5 605 27 HOH HOH . 
T 11 HOH A 6 606 41 HOH HOH . 
T 11 HOH A 7 607 10 HOH HOH . 
U 11 HOH B 1 601 35 HOH HOH . 
U 11 HOH B 2 602 2 HOH HOH . 
U 11 HOH B 3 603 4 HOH HOH . 
U 11 HOH B 4 604 18 HOH HOH . 
U 11 HOH B 5 605 42 HOH HOH . 
V 11 HOH C 1 601 14 HOH HOH . 
V 11 HOH C 2 602 3 HOH HOH . 
V 11 HOH C 3 603 16 HOH HOH . 
V 11 HOH C 4 604 8 HOH HOH . 
V 11 HOH C 5 605 21 HOH HOH . 
V 11 HOH C 6 606 6 HOH HOH . 
W 11 HOH D 1 601 9 HOH HOH . 
X 11 HOH E 1 201 1 HOH HOH . 
Y 11 HOH F 1 501 5 HOH HOH . 
Y 11 HOH F 2 502 37 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O4 LOC . . . R 9 11.453 11.952 -18.479 1 29.55 ? O4 LOC 503 D 1 
HETATM 2 C C12 LOC . . . R 9 12.286 12.564 -17.816 1 36.53 ? C12 LOC 503 D 1 
HETATM 3 C C13 LOC . . . R 9 11.89 13.47 -16.696 1 30.27 ? C13 LOC 503 D 1 
HETATM 4 N N1 LOC . . . R 9 13.593 12.46 -18.062 1 31.52 ? N1 LOC 503 D 1 
HETATM 5 C C11 LOC . . . R 9 14.098 11.691 -19.186 1 31.92 ? C11 LOC 503 D 1 
HETATM 6 C C14 LOC . . . R 9 14.304 10.247 -18.807 1 35.14 ? C14 LOC 503 D 1 
HETATM 7 C C15 LOC . . . R 9 14.755 10.003 -17.532 1 34.83 ? C15 LOC 503 D 1 
HETATM 8 C C10 LOC . . . R 9 15.408 12.257 -19.721 1 30.56 ? C10 LOC 503 D 1 
HETATM 9 C C9 LOC . . . R 9 16.055 11.216 -20.632 1 30.22 ? C9 LOC 503 D 1 
HETATM 10 C C8 LOC . . . R 9 15.077 10.635 -21.633 1 34.32 ? C8 LOC 503 D 1 
HETATM 11 C C7 LOC . . . R 9 15.118 11.048 -22.959 1 39.11 ? C7 LOC 503 D 1 
HETATM 12 C C5 LOC . . . R 9 14.233 10.546 -23.892 1 42.76 ? C5 LOC 503 D 1 
HETATM 13 C C3 LOC . . . R 9 13.27 9.612 -23.505 1 42.1 ? C3 LOC 503 D 1 
HETATM 14 C C1 LOC . . . R 9 13.212 9.189 -22.192 1 35.93 ? C1 LOC 503 D 1 
HETATM 15 O O1 LOC . . . R 9 12.263 8.267 -21.796 1 38.42 ? O1 LOC 503 D 1 
HETATM 16 C C2 LOC . . . R 9 10.989 8.825 -21.5 1 32.58 ? C2 LOC 503 D 1 
HETATM 17 O O2 LOC . . . R 9 12.388 9.096 -24.427 1 40.52 ? O2 LOC 503 D 1 
HETATM 18 C C4 LOC . . . R 9 12.762 7.82 -24.933 1 30.63 ? C4 LOC 503 D 1 
HETATM 19 O O3 LOC . . . R 9 14.208 10.896 -25.213 1 39.97 ? O3 LOC 503 D 1 
HETATM 20 C C6 LOC . . . R 9 15.456 11.18 -25.834 1 45.43 ? C6 LOC 503 D 1 
HETATM 21 C C22 LOC . . . R 9 14.115 9.696 -21.24 1 35.17 ? C22 LOC 503 D 1 
HETATM 22 C C21 LOC . . . R 9 14.061 9.255 -19.849 1 35.34 ? C21 LOC 503 D 1 
HETATM 23 C C20 LOC . . . R 9 13.793 7.889 -19.568 1 30.02 ? C20 LOC 503 D 1 
HETATM 24 C C19 LOC . . . R 9 13.996 7.161 -18.412 1 34.36 ? C19 LOC 503 D 1 
HETATM 25 C C17 LOC . . . R 9 13.986 7.599 -17.095 1 34.38 ? C17 LOC 503 D 1 
HETATM 26 C C16 LOC . . . R 9 14.367 8.92 -16.614 1 32.99 ? C16 LOC 503 D 1 
HETATM 27 O O5 LOC . . . R 9 14.378 9.091 -15.396 1 40.56 ? O5 LOC 503 D 1 
HETATM 28 O O6 LOC . . . R 9 13.564 6.705 -16.154 1 39.14 ? O6 LOC 503 D 1 
HETATM 29 C C18 LOC . . . R 9 14.304 5.485 -16.035 1 34.4 ? C18 LOC 503 D 1 
#
_model_server_stats.io_time_ms              45 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    47 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           29 
#