data_8CLC
#
_model_server_result.job_id            PFPuMZA2-b2SD43aZGp3dw 
_model_server_result.datetime_utc      '2024-11-16 21:42:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8clc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":502}' 
#
_entry.id    8CLC 
#
_exptl.entry_id    8CLC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              24.305 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MAGNESIUM ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8CLC 
_cell.length_a            106.53 
_cell.length_b            160.48 
_cell.length_c            181.24 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CLC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 H N N 
? 6 K N N 
? 6 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? 
metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? 
metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.696 ? 
metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.763 ? 
metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.584 ? 
metalc ? metalc8 G O2G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? 
metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
metalc ? metalc10 H MG MG . A MG 502 1_555 Q O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? 
metalc ? metalc11 H MG MG . A MG 502 1_555 Q O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? 
metalc ? metalc12 H MG MG . A MG 502 1_555 Q O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? 
metalc ? metalc13 J O1A GDP . B GDP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? 
metalc ? metalc14 K MG MG . B MG 502 1_555 R O HOH . B HOH 620 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc15 C OD1 ASP 39 C ASP 39 1_555 N CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? 
metalc ? metalc16 C OD2 ASP 39 C ASP 39 1_555 N CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc17 C O THR 41 C THR 41 1_555 N CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? 
metalc ? metalc18 C OG1 THR 41 C THR 41 1_555 N CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? 
metalc ? metalc19 C O GLY 44 C GLY 44 1_555 N CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? 
metalc ? metalc20 C OE1 GLU 55 C GLU 55 1_555 N CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? 
metalc ? metalc21 C OE2 GLU 55 C GLU 55 1_555 N CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc22 L O1G GTP . C GTP 501 1_555 M MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.94 ? 
metalc ? metalc23 L O1B GTP . C GTP 501 1_555 M MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.653 ? 
metalc ? metalc24 M MG MG . C MG 502 1_555 S O HOH . C HOH 612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc25 M MG MG . C MG 502 1_555 S O HOH . C HOH 615 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc26 M MG MG . C MG 502 1_555 S O HOH . C HOH 617 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
#
_chem_comp.formula           'Mg 2' 
_chem_comp.formula_weight    24.305 
_chem_comp.id                MG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MAGNESIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8CLC 
_atom_sites.fract_transf_matrix[1][1]    0.009387 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006231 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005518 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 GTP A 1 501 501 GTP GTP . 
H 6 MG A 1 502 502 MG MG . 
I 7 CA A 1 503 503 CA CA . 
J 8 GDP B 1 501 501 GDP GDP . 
K 6 MG B 1 502 502 MG MG . 
L 5 GTP C 1 501 501 GTP GTP . 
M 6 MG C 1 502 502 MG MG . 
N 7 CA C 1 503 503 CA CA . 
O 8 GDP D 1 501 501 GDP GDP . 
P 9 ACP F 1 401 401 ACP ACP . 
Q 10 HOH A 1 601 111 HOH HOH . 
Q 10 HOH A 2 602 38 HOH HOH . 
Q 10 HOH A 3 603 91 HOH HOH . 
Q 10 HOH A 4 604 97 HOH HOH . 
Q 10 HOH A 5 605 106 HOH HOH . 
Q 10 HOH A 6 606 17 HOH HOH . 
Q 10 HOH A 7 607 85 HOH HOH . 
Q 10 HOH A 8 608 65 HOH HOH . 
Q 10 HOH A 9 609 67 HOH HOH . 
Q 10 HOH A 10 610 110 HOH HOH . 
Q 10 HOH A 11 611 45 HOH HOH . 
Q 10 HOH A 12 612 12 HOH HOH . 
Q 10 HOH A 13 613 8 HOH HOH . 
Q 10 HOH A 14 614 86 HOH HOH . 
Q 10 HOH A 15 615 94 HOH HOH . 
R 10 HOH B 1 601 90 HOH HOH . 
R 10 HOH B 2 602 15 HOH HOH . 
R 10 HOH B 3 603 52 HOH HOH . 
R 10 HOH B 4 604 74 HOH HOH . 
R 10 HOH B 5 605 11 HOH HOH . 
R 10 HOH B 6 606 68 HOH HOH . 
R 10 HOH B 7 607 36 HOH HOH . 
R 10 HOH B 8 608 72 HOH HOH . 
R 10 HOH B 9 609 26 HOH HOH . 
R 10 HOH B 10 610 75 HOH HOH . 
R 10 HOH B 11 611 107 HOH HOH . 
R 10 HOH B 12 612 21 HOH HOH . 
R 10 HOH B 13 613 35 HOH HOH . 
R 10 HOH B 14 614 4 HOH HOH . 
R 10 HOH B 15 615 51 HOH HOH . 
R 10 HOH B 16 616 55 HOH HOH . 
R 10 HOH B 17 617 29 HOH HOH . 
R 10 HOH B 18 618 57 HOH HOH . 
R 10 HOH B 19 619 93 HOH HOH . 
R 10 HOH B 20 620 10 HOH HOH . 
R 10 HOH B 21 621 2 HOH HOH . 
S 10 HOH C 1 601 60 HOH HOH . 
S 10 HOH C 2 602 113 HOH HOH . 
S 10 HOH C 3 603 109 HOH HOH . 
S 10 HOH C 4 604 79 HOH HOH . 
S 10 HOH C 5 605 105 HOH HOH . 
S 10 HOH C 6 606 71 HOH HOH . 
S 10 HOH C 7 607 14 HOH HOH . 
S 10 HOH C 8 608 7 HOH HOH . 
S 10 HOH C 9 609 34 HOH HOH . 
S 10 HOH C 10 610 78 HOH HOH . 
S 10 HOH C 11 611 6 HOH HOH . 
S 10 HOH C 12 612 5 HOH HOH . 
S 10 HOH C 13 613 58 HOH HOH . 
S 10 HOH C 14 614 47 HOH HOH . 
S 10 HOH C 15 615 76 HOH HOH . 
S 10 HOH C 16 616 33 HOH HOH . 
S 10 HOH C 17 617 62 HOH HOH . 
S 10 HOH C 18 618 32 HOH HOH . 
S 10 HOH C 19 619 28 HOH HOH . 
S 10 HOH C 20 620 70 HOH HOH . 
S 10 HOH C 21 621 59 HOH HOH . 
S 10 HOH C 22 622 61 HOH HOH . 
S 10 HOH C 23 623 9 HOH HOH . 
S 10 HOH C 24 624 31 HOH HOH . 
S 10 HOH C 25 625 27 HOH HOH . 
S 10 HOH C 26 626 116 HOH HOH . 
S 10 HOH C 27 627 53 HOH HOH . 
S 10 HOH C 28 628 43 HOH HOH . 
S 10 HOH C 29 629 22 HOH HOH . 
S 10 HOH C 30 630 102 HOH HOH . 
S 10 HOH C 31 631 84 HOH HOH . 
S 10 HOH C 32 632 1 HOH HOH . 
S 10 HOH C 33 633 40 HOH HOH . 
S 10 HOH C 34 634 23 HOH HOH . 
S 10 HOH C 35 635 50 HOH HOH . 
S 10 HOH C 36 636 13 HOH HOH . 
S 10 HOH C 37 637 18 HOH HOH . 
S 10 HOH C 38 638 30 HOH HOH . 
T 10 HOH D 1 601 108 HOH HOH . 
T 10 HOH D 2 602 66 HOH HOH . 
T 10 HOH D 3 603 73 HOH HOH . 
U 10 HOH E 1 201 37 HOH HOH . 
U 10 HOH E 2 202 25 HOH HOH . 
V 10 HOH F 1 501 115 HOH HOH . 
V 10 HOH F 2 502 80 HOH HOH . 
V 10 HOH F 3 503 83 HOH HOH . 
V 10 HOH F 4 504 101 HOH HOH . 
V 10 HOH F 5 505 89 HOH HOH . 
V 10 HOH F 6 506 54 HOH HOH . 
V 10 HOH F 7 507 20 HOH HOH . 
V 10 HOH F 8 508 92 HOH HOH . 
V 10 HOH F 9 509 39 HOH HOH . 
V 10 HOH F 10 510 69 HOH HOH . 
V 10 HOH F 11 511 48 HOH HOH . 
V 10 HOH F 12 512 3 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MG 
_atom_site.label_atom_id         MG 
_atom_site.label_comp_id         MG 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       6 
_atom_site.Cartn_x               25.496 
_atom_site.Cartn_y               78.186 
_atom_site.Cartn_z               44.884 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        44.95 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MG 
_atom_site.auth_comp_id          MG 
_atom_site.auth_seq_id           502 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           26 
_model_server_stats.create_model_time_ms    98 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#