data_8CLD
#
_model_server_result.job_id            Ed2V6EoWUEr-x4dcIFqJ9g 
_model_server_result.datetime_utc      '2024-11-05 10:59:42' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cld 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":502}' 
#
_entry.id    8CLD 
#
_exptl.entry_id    8CLD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              635.145 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1S,2S,3S,5S,6S,16Z,18Z,20R,21S)-11-chloro-21-hydroxy-12,20-dimethoxy-2,5,9,16-tetramethyl-8,23-dioxo-4,24-dioxa-9,22-diazatetracyclo[19.3.1.1~10,14~.0~3,5~]hexacosa-10(26),11,13,16,18-pentaen-6-yl 2-methylpropanoate' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8CLD 
_cell.length_a            106.06 
_cell.length_b            159.61 
_cell.length_c            180.61 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CLD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      9 
_struct_asym.id                             P 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? 
metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.426 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.17 ? 
metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.369 ? 
metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.599 ? 
metalc ? metalc6 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? 
metalc ? metalc7 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? 
metalc ? metalc8 G O2G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.855 ? 
metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? 
metalc ? metalc10 J O1A GDP . B GDP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? 
metalc ? metalc11 C OD1 ASP 39 C ASP 39 1_555 N CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc12 C OD2 ASP 39 C ASP 39 1_555 N CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc13 C O THR 41 C THR 41 1_555 N CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
metalc ? metalc14 C OG1 THR 41 C THR 41 1_555 N CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc15 C O GLY 44 C GLY 44 1_555 N CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.99 ? 
metalc ? metalc16 C OE1 GLU 55 C GLU 55 1_555 N CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? 
metalc ? metalc17 C OE2 GLU 55 C GLU 55 1_555 N CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc18 C OE1 GLU 71 C GLU 71 1_555 M MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? 
metalc ? metalc19 L O1G GTP . C GTP 501 1_555 M MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? 
metalc ? metalc20 L O1B GTP . C GTP 501 1_555 M MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.943 ? 
#
_chem_comp.formula           'C32 H43 Cl N2 O9' 
_chem_comp.formula_weight    635.145 
_chem_comp.id                BKF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1S,2S,3S,5S,6S,16Z,18Z,20R,21S)-11-chloro-21-hydroxy-12,20-dimethoxy-2,5,9,16-tetramethyl-8,23-dioxo-4,24-dioxa-9,22-diazatetracyclo[19.3.1.1~10,14~.0~3,5~]hexacosa-10(26),11,13,16,18-pentaen-6-yl 2-methylpropanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C30 O29 BKF sing 121 n n 
O29 C22 BKF sing 122 n n 
C23 C24 BKF doub 123 z n 
C23 C22 BKF sing 124 n n 
C43 O42 BKF sing 125 n n 
C24 C25 BKF sing 126 n n 
C22 C21 BKF sing 127 n n 
C27 C26 BKF sing 128 n n 
C27 C04 BKF sing 129 n n 
C39 C38 BKF sing 130 n n 
C26 C25 BKF doub 131 z n 
C26 C28 BKF sing 132 n n 
C03 C04 BKF doub 133 n y 
C03 C02 BKF sing 134 n y 
C04 C05 BKF sing 135 n y 
C40 C38 BKF sing 136 n n 
O42 C02 BKF sing 137 n n 
O32 C21 BKF sing 138 n n 
C21 N20 BKF sing 139 n n 
C21 C31 BKF sing 140 n n 
C38 C36 BKF sing 141 n n 
C02 C01 BKF doub 142 n y 
N20 C18 BKF sing 143 n n 
C05 C06 BKF doub 144 n y 
C31 C16 BKF sing 145 n n 
C36 O35 BKF sing 146 n n 
C36 O37 BKF doub 147 n n 
C01 C06 BKF sing 148 n y 
C01 CL4 BKF sing 149 n n 
C18 O19 BKF doub 150 n n 
C18 O17 BKF sing 151 n n 
O35 C11 BKF sing 152 n n 
C06 N07 BKF sing 153 n n 
C10 C11 BKF sing 154 n n 
C10 C08 BKF sing 155 n n 
C16 O17 BKF sing 156 n n 
C16 C15 BKF sing 157 n n 
C13 C12 BKF sing 158 n n 
C11 C12 BKF sing 159 n n 
N07 C08 BKF sing 160 n n 
N07 C41 BKF sing 161 n n 
C08 O09 BKF doub 162 n n 
C12 C14 BKF sing 163 n n 
C12 O34 BKF sing 164 n n 
C15 C14 BKF sing 165 n n 
C15 C33 BKF sing 166 n n 
C14 O34 BKF sing 167 n n 
C10 H101 BKF sing 168 n n 
C10 H102 BKF sing 169 n n 
C13 H133 BKF sing 170 n n 
C13 H132 BKF sing 171 n n 
C13 H131 BKF sing 172 n n 
C15 H151 BKF sing 173 n n 
C22 H221 BKF sing 174 n n 
C24 H241 BKF sing 175 n n 
C28 H283 BKF sing 176 n n 
C28 H282 BKF sing 177 n n 
C28 H281 BKF sing 178 n n 
C03 H031 BKF sing 179 n n 
C05 H051 BKF sing 180 n n 
C11 H111 BKF sing 181 n n 
C14 H141 BKF sing 182 n n 
C16 H161 BKF sing 183 n n 
N20 H201 BKF sing 184 n n 
C23 H3 BKF sing 185 n n 
C25 H251 BKF sing 186 n n 
C27 H272 BKF sing 187 n n 
C27 H271 BKF sing 188 n n 
C30 H302 BKF sing 189 n n 
C30 H303 BKF sing 190 n n 
C30 H301 BKF sing 191 n n 
C31 H312 BKF sing 192 n n 
C31 H311 BKF sing 193 n n 
O32 H321 BKF sing 194 n n 
C33 H333 BKF sing 195 n n 
C33 H331 BKF sing 196 n n 
C33 H332 BKF sing 197 n n 
C38 H381 BKF sing 198 n n 
C39 H391 BKF sing 199 n n 
C39 H392 BKF sing 200 n n 
C39 H393 BKF sing 201 n n 
C40 H403 BKF sing 202 n n 
C40 H401 BKF sing 203 n n 
C40 H402 BKF sing 204 n n 
C41 H411 BKF sing 205 n n 
C41 H413 BKF sing 206 n n 
C41 H412 BKF sing 207 n n 
C43 H431 BKF sing 208 n n 
C43 H433 BKF sing 209 n n 
C43 H432 BKF sing 210 n n 
#
_atom_sites.entry_id                     8CLD 
_atom_sites.fract_transf_matrix[1][1]    0.009429 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006265 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005537 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 GTP A 1 501 501 GTP GTP . 
H 6 MG A 1 502 502 MG MG . 
I 7 CA A 1 503 503 CA CA . 
J 8 GDP B 1 501 504 GDP GDP . 
K 6 MG B 1 502 505 MG MG . 
L 5 GTP C 1 501 506 GTP GTP . 
M 6 MG C 1 502 507 MG MG . 
N 7 CA C 1 503 508 CA CA . 
O 8 GDP D 1 501 509 GDP GTP . 
P 9 BKF D 1 502 510 BKF ANS . 
Q 10 ACP F 1 401 511 ACP ACP . 
R 11 HOH A 1 601 5 HOH HOH . 
S 11 HOH C 1 601 3 HOH HOH . 
T 11 HOH E 1 201 6 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 BKF . . . P 9 25.705 -23.067 -43.786 1 74.85 ? C10 BKF 502 D 1 
HETATM 2 C C13 BKF . . . P 9 29.078 -22.899 -43.545 1 73.62 ? C13 BKF 502 D 1 
HETATM 3 C C15 BKF . . . P 9 29.995 -20.212 -42.22 1 71.31 ? C15 BKF 502 D 1 
HETATM 4 C C21 BKF . . . P 9 30.626 -19.524 -46.277 1 71.98 ? C21 BKF 502 D 1 
HETATM 5 C C22 BKF . . . P 9 30.837 -20.443 -47.663 1 67.77 ? C22 BKF 502 D 1 
HETATM 6 C C24 BKF . . . P 9 28.933 -21.972 -47.771 1 54.89 ? C24 BKF 502 D 1 
HETATM 7 C C26 BKF . . . P 9 29.215 -24.455 -47.398 1 59.64 ? C26 BKF 502 D 1 
HETATM 8 C C28 BKF . . . P 9 30.12 -25.184 -46.454 1 58.12 ? C28 BKF 502 D 1 
HETATM 9 C C01 BKF . . . P 9 25.936 -27.867 -44.85 1 82.66 ? C01 BKF 502 D 1 
HETATM 10 C C02 BKF . . . P 9 26.461 -28.358 -46.092 1 87.99 ? C02 BKF 502 D 1 
HETATM 11 C C03 BKF . . . P 9 27.1 -27.44 -46.946 1 82.98 ? C03 BKF 502 D 1 
HETATM 12 C C04 BKF . . . P 9 27.216 -26.101 -46.616 1 66.71 ? C04 BKF 502 D 1 
HETATM 13 C C05 BKF . . . P 9 26.694 -25.681 -45.398 1 70.19 ? C05 BKF 502 D 1 
HETATM 14 C C06 BKF . . . P 9 26.026 -26.482 -44.435 1 75.62 ? C06 BKF 502 D 1 
HETATM 15 N N07 BKF . . . P 9 25.514 -25.811 -43.168 1 84.71 ? N07 BKF 502 D 1 
HETATM 16 C C08 BKF . . . P 9 25.406 -24.328 -42.893 1 76.02 ? C08 BKF 502 D 1 
HETATM 17 O O09 BKF . . . P 9 24.922 -24.005 -41.814 1 72.95 ? O09 BKF 502 D 1 
HETATM 18 C C11 BKF . . . P 9 26.671 -21.805 -43.452 1 67.73 ? C11 BKF 502 D 1 
HETATM 19 C C12 BKF . . . P 9 28.052 -22.057 -42.865 1 69.5 ? C12 BKF 502 D 1 
HETATM 20 C C14 BKF . . . P 9 28.553 -20.772 -42.139 1 77.13 ? C14 BKF 502 D 1 
HETATM 21 C C16 BKF . . . P 9 30.471 -19.546 -43.703 1 73.12 ? C16 BKF 502 D 1 
HETATM 22 O O17 BKF . . . P 9 31.877 -19.213 -43.659 1 70.87 ? O17 BKF 502 D 1 
HETATM 23 C C18 BKF . . . P 9 32.463 -18.702 -44.735 1 72.83 ? C18 BKF 502 D 1 
HETATM 24 O O19 BKF . . . P 9 33.62 -18.252 -44.581 1 73.33 ? O19 BKF 502 D 1 
HETATM 25 N N20 BKF . . . P 9 31.842 -18.661 -45.985 1 68.61 ? N20 BKF 502 D 1 
HETATM 26 C C23 BKF . . . P 9 29.614 -20.99 -48.39 1 59.41 ? C23 BKF 502 D 1 
HETATM 27 C C25 BKF . . . P 9 29.518 -23.167 -47.171 1 55.28 ? C25 BKF 502 D 1 
HETATM 28 C C27 BKF . . . P 9 27.897 -25.108 -47.518 1 60.23 ? C27 BKF 502 D 1 
HETATM 29 O O29 BKF . . . P 9 31.563 -19.748 -48.664 1 69.5 ? O29 BKF 502 D 1 
HETATM 30 C C30 BKF . . . P 9 30.941 -18.622 -49.253 1 61.38 ? C30 BKF 502 D 1 
HETATM 31 C C31 BKF . . . P 9 30.272 -20.318 -44.989 1 72.55 ? C31 BKF 502 D 1 
HETATM 32 O O32 BKF . . . P 9 29.544 -18.686 -46.437 1 69.98 ? O32 BKF 502 D 1 
HETATM 33 C C33 BKF . . . P 9 31.008 -21.119 -41.533 1 77.61 ? C33 BKF 502 D 1 
HETATM 34 O O34 BKF . . . P 9 28.22 -21.985 -41.418 1 74.61 ? O34 BKF 502 D 1 
HETATM 35 O O35 BKF . . . P 9 26.786 -20.981 -44.604 1 62.35 ? O35 BKF 502 D 1 
HETATM 36 C C36 BKF . . . P 9 25.862 -20.025 -44.957 1 70.11 ? C36 BKF 502 D 1 
HETATM 37 O O37 BKF . . . P 9 26.133 -18.9 -44.548 1 78.27 ? O37 BKF 502 D 1 
HETATM 38 C C38 BKF . . . P 9 24.975 -20.169 -46.193 1 64.15 ? C38 BKF 502 D 1 
HETATM 39 C C39 BKF . . . P 9 25.494 -19.434 -47.422 1 63.03 ? C39 BKF 502 D 1 
HETATM 40 C C40 BKF . . . P 9 24.611 -21.606 -46.562 1 51.84 ? C40 BKF 502 D 1 
HETATM 41 C C41 BKF . . . P 9 25.01 -26.681 -42.018 1 81.64 ? C41 BKF 502 D 1 
HETATM 42 O O42 BKF . . . P 9 26.343 -29.717 -46.43 1 101.37 ? O42 BKF 502 D 1 
HETATM 43 C C43 BKF . . . P 9 26.667 -30.237 -47.732 1 71.92 ? C43 BKF 502 D 1 
HETATM 44 CL CL4 BKF . . . P 9 25.156 -29.077 -43.846 1 149.08 ? CL4 BKF 502 D 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    38 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#