data_8CLE # _model_server_result.job_id x8m6j3ihPkPKW1bkNxL4fA _model_server_result.datetime_utc '2024-11-16 20:30:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cle # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":503}' # _entry.id 8CLE # _exptl.entry_id 8CLE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CLE _cell.length_a 106.39 _cell.length_b 159.74 _cell.length_c 182.24 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CLE _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.198 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.091 ? metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.671 ? metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc8 G O2G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc10 B OD1 ASP 39 C ASP 39 1_555 M CA CA . C CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc11 B OD2 ASP 39 C ASP 39 1_555 M CA CA . C CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc12 B O THR 41 C THR 41 1_555 M CA CA . C CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc13 B OG1 THR 41 C THR 41 1_555 M CA CA . C CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc14 B OE1 GLU 55 C GLU 55 1_555 M CA CA . C CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.858 ? metalc ? metalc15 B OE2 GLU 55 C GLU 55 1_555 M CA CA . C CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc16 K O1G GTP . C GTP 502 1_555 L MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? metalc ? metalc17 K O1B GTP . C GTP 502 1_555 L MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8CLE _atom_sites.fract_transf_matrix[1][1] 0.009399 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00626 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005487 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 503 CA CA . J 8 VLB C 1 501 505 VLB VLB . K 5 GTP C 1 502 506 GTP GTP . L 6 MG C 1 503 507 MG MG . M 7 CA C 1 504 509 CA CA . N 9 GDP D 1 501 508 GDP GDP . O 9 GDP B 1 501 504 GDP GDP . P 10 HOH A 1 601 21 HOH HOH . P 10 HOH A 2 602 8 HOH HOH . Q 10 HOH C 1 601 1 HOH HOH . Q 10 HOH C 2 602 36 HOH HOH . Q 10 HOH C 3 603 12 HOH HOH . Q 10 HOH C 4 604 39 HOH HOH . Q 10 HOH C 5 605 34 HOH HOH . Q 10 HOH C 6 606 38 HOH HOH . R 10 HOH D 1 601 27 HOH HOH . R 10 HOH D 2 602 29 HOH HOH . R 10 HOH D 3 603 26 HOH HOH . R 10 HOH D 4 604 25 HOH HOH . R 10 HOH D 5 605 28 HOH HOH . S 10 HOH E 1 201 22 HOH HOH . T 10 HOH F 1 401 2 HOH HOH . T 10 HOH F 2 402 11 HOH HOH . T 10 HOH F 3 403 33 HOH HOH . T 10 HOH F 4 404 42 HOH HOH . T 10 HOH F 5 405 43 HOH HOH . T 10 HOH F 6 406 17 HOH HOH . T 10 HOH F 7 407 44 HOH HOH . T 10 HOH F 8 408 13 HOH HOH . U 10 HOH B 1 601 16 HOH HOH . U 10 HOH B 2 602 10 HOH HOH . U 10 HOH B 3 603 45 HOH HOH . U 10 HOH B 4 604 18 HOH HOH . U 10 HOH B 5 605 7 HOH HOH . U 10 HOH B 6 606 19 HOH HOH . U 10 HOH B 7 607 14 HOH HOH . U 10 HOH B 8 608 46 HOH HOH . U 10 HOH B 9 609 37 HOH HOH . U 10 HOH B 10 610 35 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id L _atom_site.label_entity_id 6 _atom_site.Cartn_x 17.846 _atom_site.Cartn_y 21.325 _atom_site.Cartn_z -18.918 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.72 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 503 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 1 #