data_8CLF
#
_model_server_result.job_id            siFqLySGE68Iqq6VRYEAMA 
_model_server_result.datetime_utc      '2024-11-05 10:34:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8clf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":503}' 
#
_entry.id    8CLF 
#
_exptl.entry_id    8CLF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              395.248 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-[[4-(2-bromoethyl)-3,5-dimethoxy-phenyl]diazenyl]-2-methoxy-phenol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8CLF 
_cell.length_a            106.65 
_cell.length_b            160.33 
_cell.length_c            180.95 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CLF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      9 
_struct_asym.id                             L 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? 
metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? 
metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? 
metalc ? metalc4 A OG1 THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? 
metalc ? metalc5 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc6 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.468 ? 
metalc ? metalc7 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.986 ? 
metalc ? metalc8 G O1G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? 
metalc ? metalc9 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? 
metalc ? metalc10 H MG MG . A MG 502 1_555 S O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.875 ? 
metalc ? metalc11 J O1A GDP . B GDP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? 
metalc ? metalc12 K MG MG . B MG 502 1_555 T O HOH . B HOH 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.746 ? 
metalc ? metalc13 C OD1 ASP 39 C ASP 39 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? 
metalc ? metalc14 C OD2 ASP 39 C ASP 39 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc15 C O THR 41 C THR 41 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? 
metalc ? metalc16 C OG1 THR 41 C THR 41 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? 
metalc ? metalc17 C O GLY 44 C GLY 44 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? 
metalc ? metalc18 C OE1 GLU 55 C GLU 55 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? 
metalc ? metalc19 C OE2 GLU 55 C GLU 55 1_555 O CA CA . C CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc20 C OD2 ASP 69 C ASP 69 1_555 N MG MG . C MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? 
metalc ? metalc21 N MG MG . C MG 502 1_555 U O HOH . C HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? 
metalc ? metalc22 N MG MG . C MG 502 1_555 U O HOH . C HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.617 ? 
metalc ? metalc23 N MG MG . C MG 502 1_555 U O HOH . C HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? 
metalc ? metalc24 D OE1 GLN 11 D GLN 11 1_555 Q MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.964 ? 
metalc ? metalc25 D OD2 ASP 177 D ASP 179 1_555 Q MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.828 ? 
metalc ? metalc26 P O1A GDP . D GDP 501 1_555 Q MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
#
_chem_comp.formula           'C17 H19 Br N2 O4' 
_chem_comp.formula_weight    395.248 
_chem_comp.id                V1O 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-[[4-(2-bromoethyl)-3,5-dimethoxy-phenyl]diazenyl]-2-methoxy-phenol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C4 O V1O sing 504 n n 
O C3 V1O sing 505 n n 
BR C V1O sing 506 n n 
C C1 V1O sing 507 n n 
C1 C2 V1O sing 508 n n 
C3 C2 V1O doub 509 n y 
C3 C5 V1O sing 510 n y 
C2 C15 V1O sing 511 n y 
C5 C6 V1O doub 512 n y 
C15 O3 V1O sing 513 n n 
C15 C14 V1O doub 514 n y 
C6 C14 V1O sing 515 n y 
C6 N V1O sing 516 n n 
O3 C16 V1O sing 517 n n 
N N1 V1O doub 518 n n 
N1 C7 V1O sing 519 n n 
C13 C7 V1O doub 520 n y 
C13 C12 V1O sing 521 n y 
C7 C8 V1O sing 522 n y 
C12 C10 V1O doub 523 n y 
C8 C9 V1O doub 524 n y 
C10 C9 V1O sing 525 n y 
C10 O2 V1O sing 526 n n 
C9 O1 V1O sing 527 n n 
O2 C11 V1O sing 528 n n 
C8 H1 V1O sing 529 n n 
C11 H2 V1O sing 530 n n 
C11 H3 V1O sing 531 n n 
C11 H4 V1O sing 532 n n 
C12 H13 V1O sing 533 n n 
O1 H5 V1O sing 534 n n 
C1 H6 V1O sing 535 n n 
C1 H7 V1O sing 536 n n 
C4 H8 V1O sing 537 n n 
C4 H9 V1O sing 538 n n 
C4 H10 V1O sing 539 n n 
C5 H11 V1O sing 540 n n 
C H V1O sing 541 n n 
C H19 V1O sing 542 n n 
C13 H14 V1O sing 543 n n 
C14 H15 V1O sing 544 n n 
C16 H18 V1O sing 545 n n 
C16 H17 V1O sing 546 n n 
C16 H16 V1O sing 547 n n 
#
_atom_sites.entry_id                     8CLF 
_atom_sites.fract_transf_matrix[1][1]    0.009376 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006237 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005526 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 5 GTP A 1 501 501 GTP GTP . 
H 6 MG A 1 502 502 MG MG . 
I 7 CA A 1 503 503 CA CA . 
J 8 GDP B 1 501 504 GDP GDP . 
K 6 MG B 1 502 505 MG MG . 
L 9 V1O B 1 503 506 V1O SQB . 
M 5 GTP C 1 501 507 GTP GTP . 
N 6 MG C 1 502 508 MG MG . 
O 7 CA C 1 503 512 CA CA . 
P 8 GDP D 1 501 509 GDP GDP . 
Q 6 MG D 1 502 510 MG MG . 
R 10 ACP F 1 401 511 ACP ACP . 
S 11 HOH A 1 601 66 HOH HOH . 
S 11 HOH A 2 602 29 HOH HOH . 
S 11 HOH A 3 603 42 HOH HOH . 
S 11 HOH A 4 604 8 HOH HOH . 
T 11 HOH B 1 601 65 HOH HOH . 
T 11 HOH B 2 602 3 HOH HOH . 
T 11 HOH B 3 603 14 HOH HOH . 
T 11 HOH B 4 604 1 HOH HOH . 
T 11 HOH B 5 605 5 HOH HOH . 
T 11 HOH B 6 606 30 HOH HOH . 
U 11 HOH C 1 601 13 HOH HOH . 
U 11 HOH C 2 602 27 HOH HOH . 
U 11 HOH C 3 603 48 HOH HOH . 
U 11 HOH C 4 604 11 HOH HOH . 
U 11 HOH C 5 605 68 HOH HOH . 
U 11 HOH C 6 606 36 HOH HOH . 
U 11 HOH C 7 607 43 HOH HOH . 
U 11 HOH C 8 608 25 HOH HOH . 
U 11 HOH C 9 609 44 HOH HOH . 
U 11 HOH C 10 610 63 HOH HOH . 
U 11 HOH C 11 611 17 HOH HOH . 
U 11 HOH C 12 612 2 HOH HOH . 
U 11 HOH C 13 613 28 HOH HOH . 
U 11 HOH C 14 614 46 HOH HOH . 
U 11 HOH C 15 615 49 HOH HOH . 
U 11 HOH C 16 616 72 HOH HOH . 
U 11 HOH C 17 617 4 HOH HOH . 
U 11 HOH C 18 618 45 HOH HOH . 
V 11 HOH D 1 601 58 HOH HOH . 
W 11 HOH F 1 501 19 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C7 V1O . . . L 9 18.838 67.341 42.981 1 76.33 ? C7 V1O 503 B 1 
HETATM 2 C C8 V1O . . . L 9 18.921 67.646 44.337 1 78.01 ? C8 V1O 503 B 1 
HETATM 3 C C9 V1O . . . L 9 18.49 66.731 45.289 1 81.57 ? C9 V1O 503 B 1 
HETATM 4 C C10 V1O . . . L 9 17.993 65.482 44.875 1 75.8 ? C10 V1O 503 B 1 
HETATM 5 C C11 V1O . . . L 9 18.72 64.056 46.688 1 105.42 ? C11 V1O 503 B 1 
HETATM 6 C C12 V1O . . . L 9 17.89 65.189 43.524 1 82.3 ? C12 V1O 503 B 1 
HETATM 7 O O1 V1O . . . L 9 18.527 67.11 46.591 1 73.09 ? O1 V1O 503 B 1 
HETATM 8 C C1 V1O . . . L 9 14.203 67.6 38.048 1 105.48 ? C1 V1O 503 B 1 
HETATM 9 C C2 V1O . . . L 9 15.548 67.716 38.741 1 90.48 ? C2 V1O 503 B 1 
HETATM 10 C C3 V1O . . . L 9 16.805 68.109 38.253 1 89.34 ? C3 V1O 503 B 1 
HETATM 11 C C4 V1O . . . L 9 16.932 66.853 36.194 1 90.38 ? C4 V1O 503 B 1 
HETATM 12 C C5 V1O . . . L 9 17.82 68.504 39.117 1 96.23 ? C5 V1O 503 B 1 
HETATM 13 C C6 V1O . . . L 9 17.578 68.549 40.491 1 90.73 ? C6 V1O 503 B 1 
HETATM 14 O O2 V1O . . . L 9 17.659 64.623 45.895 1 77.12 ? O2 V1O 503 B 1 
HETATM 15 O O3 V1O . . . L 9 14.52 66.623 40.494 1 104.94 ? O3 V1O 503 B 1 
HETATM 16 N N V1O . . . L 9 18.547 69.076 41.442 1 77.42 ? N V1O 503 B 1 
HETATM 17 C C V1O . . . L 9 13.839 66.161 37.754 1 104.24 ? C V1O 503 B 1 
HETATM 18 O O V1O . . . L 9 16.928 68.11 36.887 1 104.15 ? O V1O 503 B 1 
HETATM 19 C C13 V1O . . . L 9 18.305 66.118 42.584 1 82.76 ? C13 V1O 503 B 1 
HETATM 20 C C14 V1O . . . L 9 16.365 68.08 40.988 1 86.48 ? C14 V1O 503 B 1 
HETATM 21 C C15 V1O . . . L 9 15.412 67.585 40.122 1 97.52 ? C15 V1O 503 B 1 
HETATM 22 C C16 V1O . . . L 9 13.552 66.932 41.473 1 91.07 ? C16 V1O 503 B 1 
HETATM 23 N N1 V1O . . . L 9 19.346 68.241 41.954 1 72.6 ? N1 V1O 503 B 1 
HETATM 24 BR BR V1O . . . L 9 11.909 65.86 37.726 1 117.89 ? BR V1O 503 B 1 
HETATM 25 H H13 V1O . . . L 9 17.486 64.233 43.196 1 98.84 ? H13 V1O 503 B 1 
HETATM 26 H H V1O . . . L 9 14.185 65.828 36.777 1 125.16 ? H V1O 503 B 1 
HETATM 27 H H14 V1O . . . L 9 18.206 65.874 41.527 1 99.39 ? H14 V1O 503 B 1 
HETATM 28 H H15 V1O . . . L 9 16.178 68.106 42.061 1 103.85 ? H15 V1O 503 B 1 
HETATM 29 H H18 V1O . . . L 9 13.73 66.188 42.248 1 109.36 ? H18 V1O 503 B 1 
HETATM 30 H H17 V1O . . . L 9 12.609 66.819 40.94 1 109.36 ? H17 V1O 503 B 1 
HETATM 31 H H16 V1O . . . L 9 13.797 67.954 41.757 1 109.36 ? H16 V1O 503 B 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    51 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#