data_8CLH # _model_server_result.job_id tcTth_rO1jVgO_CZGCo-2A _model_server_result.datetime_utc '2024-11-13 04:06:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8clh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":502}' # _entry.id 8CLH # _exptl.entry_id 8CLH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CLH _cell.length_a 107 _cell.length_b 160.34 _cell.length_c 181.92 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CLH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 K N N ? 6 Q N N ? 6 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? metalc ? metalc2 A OD2 ASP 39 A ASP 39 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.473 ? metalc ? metalc3 A O THR 41 A THR 41 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc4 A O GLY 44 A GLY 44 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc5 A OE1 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc6 A OE2 GLU 55 A GLU 55 1_555 I CA CA . A CA 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.8 ? metalc ? metalc7 G O2G GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc8 G O1B GTP . A GTP 501 1_555 H MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc9 H MG MG . A MG 502 1_555 X O HOH . A HOH 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc10 H MG MG . A MG 502 1_555 X O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc11 H MG MG . A MG 502 1_555 X O HOH . A HOH 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc12 H MG MG . A MG 502 1_555 X O HOH . A HOH 625 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc13 J O1A GDP . B GDP 501 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc14 K MG MG . B MG 502 1_555 Y O HOH . B HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.682 ? metalc ? metalc15 K MG MG . B MG 502 1_555 Y O HOH . B HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc16 C OD1 ASP 39 C ASP 39 1_555 R CA CA . C CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? metalc ? metalc17 C OD2 ASP 39 C ASP 39 1_555 R CA CA . C CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc18 C O THR 41 C THR 41 1_555 R CA CA . C CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc19 C OG1 THR 41 C THR 41 1_555 R CA CA . C CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc20 C O GLY 44 C GLY 44 1_555 R CA CA . C CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc21 C OE1 GLU 55 C GLU 55 1_555 R CA CA . C CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.508 ? metalc ? metalc22 C OE2 GLU 55 C GLU 55 1_555 R CA CA . C CA 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc23 P O1G GTP . C GTP 502 1_555 Q MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc24 P O1B GTP . C GTP 502 1_555 Q MG MG . C MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc25 Q MG MG . C MG 503 1_555 Z O HOH . C HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc26 Q MG MG . C MG 503 1_555 Z O HOH . C HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc27 Q MG MG . C MG 503 1_555 Z O HOH . C HOH 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc28 Q MG MG . C MG 503 1_555 Z O HOH . C HOH 624 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc29 S O1A GDP . D GDP 501 1_555 T MG MG . D MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8CLH _atom_sites.fract_transf_matrix[1][1] 0.009346 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006237 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005497 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 GTP A 1 501 501 GTP GTP . H 6 MG A 1 502 502 MG MG . I 7 CA A 1 503 503 CA CA . J 8 GDP B 1 501 504 GDP GDP . K 6 MG B 1 502 505 MG MG . L 9 LOC B 1 503 507 LOC COL . M 10 EP B 1 504 508 EP EPA . N 11 POU B 1 505 510 POU POU . O 12 VLB C 1 501 509 VLB VLB . P 5 GTP C 1 502 511 GTP GTP . Q 6 MG C 1 503 512 MG MG . R 7 CA C 1 504 513 CA CA . S 8 GDP D 1 501 514 GDP GDP . T 6 MG D 1 502 515 MG MG . U 10 EP D 1 503 516 EP EPA . V 13 BKF D 1 504 517 BKF ANS . W 14 ACP F 1 401 506 ACP ACP . X 15 HOH A 1 601 126 HOH HOH . X 15 HOH A 2 602 193 HOH HOH . X 15 HOH A 3 603 66 HOH HOH . X 15 HOH A 4 604 8 HOH HOH . X 15 HOH A 5 605 189 HOH HOH . X 15 HOH A 6 606 183 HOH HOH . X 15 HOH A 7 607 70 HOH HOH . X 15 HOH A 8 608 190 HOH HOH . X 15 HOH A 9 609 91 HOH HOH . X 15 HOH A 10 610 125 HOH HOH . X 15 HOH A 11 611 192 HOH HOH . X 15 HOH A 12 612 194 HOH HOH . X 15 HOH A 13 613 81 HOH HOH . X 15 HOH A 14 614 10 HOH HOH . X 15 HOH A 15 615 195 HOH HOH . X 15 HOH A 16 616 128 HOH HOH . X 15 HOH A 17 617 79 HOH HOH . X 15 HOH A 18 618 158 HOH HOH . X 15 HOH A 19 619 169 HOH HOH . X 15 HOH A 20 620 113 HOH HOH . X 15 HOH A 21 621 97 HOH HOH . X 15 HOH A 22 622 103 HOH HOH . X 15 HOH A 23 623 199 HOH HOH . X 15 HOH A 24 624 24 HOH HOH . X 15 HOH A 25 625 120 HOH HOH . X 15 HOH A 26 626 191 HOH HOH . X 15 HOH A 27 627 166 HOH HOH . X 15 HOH A 28 628 40 HOH HOH . Y 15 HOH B 1 601 188 HOH HOH . Y 15 HOH B 2 602 38 HOH HOH . Y 15 HOH B 3 603 75 HOH HOH . Y 15 HOH B 4 604 201 HOH HOH . Y 15 HOH B 5 605 76 HOH HOH . Y 15 HOH B 6 606 3 HOH HOH . Y 15 HOH B 7 607 48 HOH HOH . Y 15 HOH B 8 608 68 HOH HOH . Y 15 HOH B 9 609 64 HOH HOH . Y 15 HOH B 10 610 50 HOH HOH . Y 15 HOH B 11 611 170 HOH HOH . Y 15 HOH B 12 612 59 HOH HOH . Y 15 HOH B 13 613 104 HOH HOH . Y 15 HOH B 14 614 9 HOH HOH . Y 15 HOH B 15 615 77 HOH HOH . Y 15 HOH B 16 616 18 HOH HOH . Y 15 HOH B 17 617 78 HOH HOH . Y 15 HOH B 18 618 168 HOH HOH . Y 15 HOH B 19 619 6 HOH HOH . Y 15 HOH B 20 620 107 HOH HOH . Y 15 HOH B 21 621 148 HOH HOH . Y 15 HOH B 22 622 105 HOH HOH . Y 15 HOH B 23 623 144 HOH HOH . Y 15 HOH B 24 624 106 HOH HOH . Y 15 HOH B 25 625 151 HOH HOH . Z 15 HOH C 1 601 35 HOH HOH . Z 15 HOH C 2 602 162 HOH HOH . Z 15 HOH C 3 603 1 HOH HOH . Z 15 HOH C 4 604 146 HOH HOH . Z 15 HOH C 5 605 136 HOH HOH . Z 15 HOH C 6 606 61 HOH HOH . Z 15 HOH C 7 607 30 HOH HOH . Z 15 HOH C 8 608 204 HOH HOH . Z 15 HOH C 9 609 182 HOH HOH . Z 15 HOH C 10 610 180 HOH HOH . Z 15 HOH C 11 611 122 HOH HOH . Z 15 HOH C 12 612 187 HOH HOH . Z 15 HOH C 13 613 82 HOH HOH . Z 15 HOH C 14 614 84 HOH HOH . Z 15 HOH C 15 615 32 HOH HOH . Z 15 HOH C 16 616 119 HOH HOH . Z 15 HOH C 17 617 156 HOH HOH . Z 15 HOH C 18 618 2 HOH HOH . Z 15 HOH C 19 619 96 HOH HOH . Z 15 HOH C 20 620 34 HOH HOH . Z 15 HOH C 21 621 23 HOH HOH . Z 15 HOH C 22 622 203 HOH HOH . Z 15 HOH C 23 623 7 HOH HOH . Z 15 HOH C 24 624 121 HOH HOH . Z 15 HOH C 25 625 11 HOH HOH . Z 15 HOH C 26 626 175 HOH HOH . Z 15 HOH C 27 627 80 HOH HOH . Z 15 HOH C 28 628 171 HOH HOH . Z 15 HOH C 29 629 89 HOH HOH . Z 15 HOH C 30 630 202 HOH HOH . Z 15 HOH C 31 631 98 HOH HOH . Z 15 HOH C 32 632 56 HOH HOH . Z 15 HOH C 33 633 152 HOH HOH . Z 15 HOH C 34 634 67 HOH HOH . Z 15 HOH C 35 635 197 HOH HOH . Z 15 HOH C 36 636 186 HOH HOH . Z 15 HOH C 37 637 83 HOH HOH . Z 15 HOH C 38 638 14 HOH HOH . Z 15 HOH C 39 639 26 HOH HOH . Z 15 HOH C 40 640 87 HOH HOH . Z 15 HOH C 41 641 4 HOH HOH . Z 15 HOH C 42 642 37 HOH HOH . Z 15 HOH C 43 643 15 HOH HOH . Z 15 HOH C 44 644 12 HOH HOH . Z 15 HOH C 45 645 65 HOH HOH . Z 15 HOH C 46 646 184 HOH HOH . Z 15 HOH C 47 647 71 HOH HOH . Z 15 HOH C 48 648 72 HOH HOH . Z 15 HOH C 49 649 167 HOH HOH . Z 15 HOH C 50 650 28 HOH HOH . Z 15 HOH C 51 651 117 HOH HOH . Z 15 HOH C 52 652 100 HOH HOH . Z 15 HOH C 53 653 149 HOH HOH . Z 15 HOH C 54 654 153 HOH HOH . AA 15 HOH D 1 601 185 HOH HOH . AA 15 HOH D 2 602 25 HOH HOH . AA 15 HOH D 3 603 157 HOH HOH . AA 15 HOH D 4 604 198 HOH HOH . AA 15 HOH D 5 605 196 HOH HOH . AA 15 HOH D 6 606 176 HOH HOH . AA 15 HOH D 7 607 181 HOH HOH . AA 15 HOH D 8 608 21 HOH HOH . AA 15 HOH D 9 609 46 HOH HOH . AA 15 HOH D 10 610 17 HOH HOH . BA 15 HOH E 1 201 49 HOH HOH . BA 15 HOH E 2 202 27 HOH HOH . BA 15 HOH E 3 203 86 HOH HOH . CA 15 HOH F 1 501 172 HOH HOH . CA 15 HOH F 2 502 160 HOH HOH . CA 15 HOH F 3 503 90 HOH HOH . CA 15 HOH F 4 504 57 HOH HOH . CA 15 HOH F 5 505 200 HOH HOH . CA 15 HOH F 6 506 74 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id T _atom_site.label_entity_id 6 _atom_site.Cartn_x 21.871 _atom_site.Cartn_y -12.796 _atom_site.Cartn_z -45.64 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 93.18 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 502 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 47 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #