data_8CLV
#
_model_server_result.job_id            4hfPPRTdUxTCZtAMy29Ptw 
_model_server_result.datetime_utc      '2024-11-27 14:30:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8clv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":400}' 
#
_entry.id    8CLV 
#
_exptl.entry_id    8CLV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              336.38 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2,4-dihydroxy-6-[(1E,10S)-10-hydroxy-6-oxoundec-1-en-1-yl]benzoic acid' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8CLV 
_cell.length_a            123.38 
_cell.length_b            172.09 
_cell.length_c            136.13 
_cell.Z_PDB               32 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CLV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
? dimeric 2 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,I,J 1 1 
C,D,G,H,K,L 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 G N N 
? 2 H N N 
#
_chem_comp.formula           'C18 H24 O6' 
_chem_comp.formula_weight    336.38 
_chem_comp.id                ZGR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '2,4-dihydroxy-6-[(1E,10S)-10-hydroxy-6-oxoundec-1-en-1-yl]benzoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 C4 ZGR sing 376 n n 
C4 C5 ZGR sing 377 n y 
C4 C3 ZGR doub 378 n y 
C5 C6 ZGR doub 379 n y 
C3 C2 ZGR sing 380 n y 
C2P C3P ZGR sing 381 n n 
C2P C1P ZGR doub 382 e n 
C3P C4P ZGR sing 383 n n 
C6 C1P ZGR sing 384 n n 
C6 C1 ZGR sing 385 n y 
C2 C1 ZGR doub 386 n y 
C2 O2 ZGR sing 387 n n 
C1 C12 ZGR sing 388 n n 
C4P C5P ZGR sing 389 n n 
C12 O12 ZGR doub 390 n n 
C12 O13 ZGR sing 391 n n 
C5P C6P ZGR sing 392 n n 
C6P O6P ZGR doub 393 n n 
C6P C7P ZGR sing 394 n n 
C7P C8P ZGR sing 395 n n 
O10 C10 ZGR sing 396 n n 
C10 C9P ZGR sing 397 n n 
C10 C11 ZGR sing 398 n n 
C9P C8P ZGR sing 399 n n 
C3 H1 ZGR sing 400 n n 
O2 H2 ZGR sing 401 n n 
O4 H3 ZGR sing 402 n n 
C5 H4 ZGR sing 403 n n 
C7P H5 ZGR sing 404 n n 
C7P H6 ZGR sing 405 n n 
C8P H7 ZGR sing 406 n n 
C8P H8 ZGR sing 407 n n 
C9P H9 ZGR sing 408 n n 
C9P H10 ZGR sing 409 n n 
C10 H11 ZGR sing 410 n n 
O10 H12 ZGR sing 411 n n 
C11 H13 ZGR sing 412 n n 
C11 H14 ZGR sing 413 n n 
C11 H15 ZGR sing 414 n n 
C5P H16 ZGR sing 415 n n 
C5P H17 ZGR sing 416 n n 
C4P H18 ZGR sing 417 n n 
C4P H19 ZGR sing 418 n n 
C3P H20 ZGR sing 419 n n 
C3P H21 ZGR sing 420 n n 
C2P H22 ZGR sing 421 n n 
C1P H23 ZGR sing 422 n n 
O13 H24 ZGR sing 423 n n 
#
_atom_sites.entry_id                     8CLV 
_atom_sites.fract_transf_matrix[1][1]    0.008105 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005811 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007346 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ZGR A 1 400 400 ZGR ZEC . 
F 2 ZGR B 1 400 400 ZGR ZEC . 
G 2 ZGR C 1 400 400 ZGR ZEC . 
H 2 ZGR D 1 400 400 ZGR ZEC . 
I 3 HOH A 1 501 346 HOH HOH . 
I 3 HOH A 2 502 344 HOH HOH . 
I 3 HOH A 3 503 351 HOH HOH . 
I 3 HOH A 4 504 354 HOH HOH . 
I 3 HOH A 5 505 364 HOH HOH . 
I 3 HOH A 6 506 362 HOH HOH . 
I 3 HOH A 7 507 343 HOH HOH . 
I 3 HOH A 8 508 338 HOH HOH . 
I 3 HOH A 9 509 335 HOH HOH . 
I 3 HOH A 10 510 357 HOH HOH . 
I 3 HOH A 11 511 366 HOH HOH . 
I 3 HOH A 12 512 336 HOH HOH . 
I 3 HOH A 13 513 359 HOH HOH . 
I 3 HOH A 14 514 339 HOH HOH . 
I 3 HOH A 15 515 353 HOH HOH . 
I 3 HOH A 16 516 349 HOH HOH . 
I 3 HOH A 17 517 350 HOH HOH . 
I 3 HOH A 18 518 330 HOH HOH . 
I 3 HOH A 19 519 334 HOH HOH . 
I 3 HOH A 20 520 352 HOH HOH . 
I 3 HOH A 21 521 356 HOH HOH . 
I 3 HOH A 22 522 363 HOH HOH . 
I 3 HOH A 23 523 332 HOH HOH . 
I 3 HOH A 24 524 355 HOH HOH . 
I 3 HOH A 25 525 342 HOH HOH . 
I 3 HOH A 26 526 345 HOH HOH . 
I 3 HOH A 27 527 337 HOH HOH . 
I 3 HOH A 28 528 331 HOH HOH . 
I 3 HOH A 29 529 333 HOH HOH . 
I 3 HOH A 30 530 340 HOH HOH . 
I 3 HOH A 31 531 329 HOH HOH . 
I 3 HOH A 32 532 328 HOH HOH . 
I 3 HOH A 33 533 358 HOH HOH . 
I 3 HOH A 34 534 361 HOH HOH . 
I 3 HOH A 35 535 360 HOH HOH . 
I 3 HOH A 36 536 341 HOH HOH . 
I 3 HOH A 37 537 347 HOH HOH . 
J 3 HOH B 1 501 347 HOH HOH . 
J 3 HOH B 2 502 339 HOH HOH . 
J 3 HOH B 3 503 333 HOH HOH . 
J 3 HOH B 4 504 350 HOH HOH . 
J 3 HOH B 5 505 336 HOH HOH . 
J 3 HOH B 6 506 1 HOH HOH . 
J 3 HOH B 7 507 335 HOH HOH . 
J 3 HOH B 8 508 343 HOH HOH . 
J 3 HOH B 9 509 345 HOH HOH . 
J 3 HOH B 10 510 328 HOH HOH . 
J 3 HOH B 11 511 340 HOH HOH . 
J 3 HOH B 12 512 356 HOH HOH . 
J 3 HOH B 13 513 330 HOH HOH . 
J 3 HOH B 14 514 358 HOH HOH . 
J 3 HOH B 15 515 342 HOH HOH . 
J 3 HOH B 16 516 349 HOH HOH . 
J 3 HOH B 17 517 353 HOH HOH . 
J 3 HOH B 18 518 341 HOH HOH . 
J 3 HOH B 19 519 361 HOH HOH . 
J 3 HOH B 20 520 354 HOH HOH . 
J 3 HOH B 21 521 351 HOH HOH . 
J 3 HOH B 22 522 355 HOH HOH . 
J 3 HOH B 23 523 344 HOH HOH . 
J 3 HOH B 24 524 334 HOH HOH . 
J 3 HOH B 25 525 338 HOH HOH . 
J 3 HOH B 26 526 332 HOH HOH . 
J 3 HOH B 27 527 357 HOH HOH . 
J 3 HOH B 28 528 359 HOH HOH . 
J 3 HOH B 29 529 360 HOH HOH . 
J 3 HOH B 30 530 331 HOH HOH . 
J 3 HOH B 31 531 329 HOH HOH . 
J 3 HOH B 32 532 337 HOH HOH . 
J 3 HOH B 33 533 346 HOH HOH . 
K 3 HOH C 1 501 340 HOH HOH . 
K 3 HOH C 2 502 334 HOH HOH . 
K 3 HOH C 3 503 337 HOH HOH . 
K 3 HOH C 4 504 352 HOH HOH . 
K 3 HOH C 5 505 342 HOH HOH . 
K 3 HOH C 6 506 2 HOH HOH . 
K 3 HOH C 7 507 349 HOH HOH . 
K 3 HOH C 8 508 348 HOH HOH . 
K 3 HOH C 9 509 361 HOH HOH . 
K 3 HOH C 10 510 336 HOH HOH . 
K 3 HOH C 11 511 351 HOH HOH . 
K 3 HOH C 12 512 329 HOH HOH . 
K 3 HOH C 13 513 362 HOH HOH . 
K 3 HOH C 14 514 357 HOH HOH . 
K 3 HOH C 15 515 356 HOH HOH . 
K 3 HOH C 16 516 339 HOH HOH . 
K 3 HOH C 17 517 359 HOH HOH . 
K 3 HOH C 18 518 360 HOH HOH . 
K 3 HOH C 19 519 338 HOH HOH . 
K 3 HOH C 20 520 343 HOH HOH . 
K 3 HOH C 21 521 335 HOH HOH . 
K 3 HOH C 22 522 347 HOH HOH . 
K 3 HOH C 23 523 350 HOH HOH . 
K 3 HOH C 24 524 330 HOH HOH . 
K 3 HOH C 25 525 333 HOH HOH . 
K 3 HOH C 26 526 344 HOH HOH . 
K 3 HOH C 27 527 331 HOH HOH . 
K 3 HOH C 28 528 358 HOH HOH . 
K 3 HOH C 29 529 345 HOH HOH . 
K 3 HOH C 30 530 355 HOH HOH . 
K 3 HOH C 31 531 328 HOH HOH . 
K 3 HOH C 32 532 332 HOH HOH . 
K 3 HOH C 33 533 352 HOH HOH . 
K 3 HOH C 34 534 353 HOH HOH . 
K 3 HOH C 35 535 354 HOH HOH . 
L 3 HOH D 1 501 354 HOH HOH . 
L 3 HOH D 2 502 330 HOH HOH . 
L 3 HOH D 3 503 332 HOH HOH . 
L 3 HOH D 4 504 349 HOH HOH . 
L 3 HOH D 5 505 329 HOH HOH . 
L 3 HOH D 6 506 357 HOH HOH . 
L 3 HOH D 7 507 339 HOH HOH . 
L 3 HOH D 8 508 342 HOH HOH . 
L 3 HOH D 9 509 333 HOH HOH . 
L 3 HOH D 10 510 3 HOH HOH . 
L 3 HOH D 11 511 335 HOH HOH . 
L 3 HOH D 12 512 351 HOH HOH . 
L 3 HOH D 13 513 336 HOH HOH . 
L 3 HOH D 14 514 331 HOH HOH . 
L 3 HOH D 15 515 341 HOH HOH . 
L 3 HOH D 16 516 353 HOH HOH . 
L 3 HOH D 17 517 344 HOH HOH . 
L 3 HOH D 18 518 345 HOH HOH . 
L 3 HOH D 19 519 355 HOH HOH . 
L 3 HOH D 20 520 338 HOH HOH . 
L 3 HOH D 21 521 350 HOH HOH . 
L 3 HOH D 22 522 337 HOH HOH . 
L 3 HOH D 23 523 347 HOH HOH . 
L 3 HOH D 24 524 340 HOH HOH . 
L 3 HOH D 25 525 348 HOH HOH . 
L 3 HOH D 26 526 356 HOH HOH . 
L 3 HOH D 27 527 348 HOH HOH . 
L 3 HOH D 28 528 343 HOH HOH . 
L 3 HOH D 29 529 334 HOH HOH . 
L 3 HOH D 30 530 328 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 ZGR . . . F 2 49.078 27.453 9.88 0.95 45.4 ? C1 ZGR 400 B 1 
HETATM 2 C C2 ZGR . . . F 2 47.948 27.369 10.666 0.95 45.13 ? C2 ZGR 400 B 1 
HETATM 3 C C3 ZGR . . . F 2 47.619 28.369 11.56 0.95 44.69 ? C3 ZGR 400 B 1 
HETATM 4 O O2 ZGR . . . F 2 47.12 26.254 10.555 0.95 45.19 ? O2 ZGR 400 B 1 
HETATM 5 C C4 ZGR . . . F 2 48.426 29.481 11.686 0.95 44.84 ? C4 ZGR 400 B 1 
HETATM 6 O O4 ZGR . . . F 2 48.059 30.481 12.601 0.95 44.09 ? O4 ZGR 400 B 1 
HETATM 7 C C5 ZGR . . . F 2 49.57 29.583 10.905 0.95 45.29 ? C5 ZGR 400 B 1 
HETATM 8 C C6 ZGR . . . F 2 49.902 28.561 10.023 0.95 45.8 ? C6 ZGR 400 B 1 
HETATM 9 O O6P ZGR . . . F 2 54.037 30.917 7.647 0.95 56.3 ? O6P ZGR 400 B 1 
HETATM 10 C C6P ZGR . . . F 2 54.845 30.484 8.401 0.95 54.82 ? C6P ZGR 400 B 1 
HETATM 11 C C7P ZGR . . . F 2 56.024 29.667 7.87 0.95 54.43 ? C7P ZGR 400 B 1 
HETATM 12 C C8P ZGR . . . F 2 55.741 29.177 6.448 0.95 55.47 ? C8P ZGR 400 B 1 
HETATM 13 C C9P ZGR . . . F 2 54.644 28.111 6.454 0.95 54.75 ? C9P ZGR 400 B 1 
HETATM 14 C C10 ZGR . . . F 2 53.746 28.229 5.218 0.95 57.64 ? C10 ZGR 400 B 1 
HETATM 15 O O10 ZGR . . . F 2 54.526 28.171 4.052 0.95 59.89 ? O10 ZGR 400 B 1 
HETATM 16 C C11 ZGR . . . F 2 52.961 29.544 5.248 0.95 57.4 ? C11 ZGR 400 B 1 
HETATM 17 C C5P ZGR . . . F 2 54.681 30.73 9.905 0.95 52.6 ? C5P ZGR 400 B 1 
HETATM 18 C C4P ZGR . . . F 2 54.372 29.415 10.625 0.95 48.85 ? C4P ZGR 400 B 1 
HETATM 19 C C3P ZGR . . . F 2 52.863 29.271 10.835 0.95 47.84 ? C3P ZGR 400 B 1 
HETATM 20 C C2P ZGR . . . F 2 52.351 28.954 9.443 0.95 49.35 ? C2P ZGR 400 B 1 
HETATM 21 C C1P ZGR . . . F 2 51.12 28.656 9.115 0.95 48.31 ? C1P ZGR 400 B 1 
HETATM 22 C C12 ZGR . . . F 2 49.351 26.393 9.007 0.95 45.5 ? C12 ZGR 400 B 1 
HETATM 23 O O13 ZGR . . . F 2 48.486 25.488 8.882 0.95 45.26 ? O13 ZGR 400 B 1 
HETATM 24 O O12 ZGR . . . F 2 50.441 26.248 8.386 0.95 44.97 ? O12 ZGR 400 B 1 
HETATM 25 H H1 ZGR . . . F 2 46.85 28.294 12.078 0.95 53.63 ? H1 ZGR 400 B 1 
HETATM 26 H H2 ZGR . . . F 2 46.719 26.13 11.291 0.95 54.23 ? H2 ZGR 400 B 1 
HETATM 27 H H3 ZGR . . . F 2 47.211 30.507 12.669 0.95 52.91 ? H3 ZGR 400 B 1 
HETATM 28 H H4 ZGR . . . F 2 50.114 30.334 10.973 0.95 54.34 ? H4 ZGR 400 B 1 
HETATM 29 H H5 ZGR . . . F 2 56.82 30.222 7.863 0.95 65.32 ? H5 ZGR 400 B 1 
HETATM 30 H H6 ZGR . . . F 2 56.168 28.901 8.448 0.95 65.32 ? H6 ZGR 400 B 1 
HETATM 31 H H7 ZGR . . . F 2 56.552 28.798 6.074 0.95 66.56 ? H7 ZGR 400 B 1 
HETATM 32 H H8 ZGR . . . F 2 55.454 29.927 5.904 0.95 66.56 ? H8 ZGR 400 B 1 
HETATM 33 H H9 ZGR . . . F 2 55.057 27.233 6.462 0.95 65.7 ? H9 ZGR 400 B 1 
HETATM 34 H H10 ZGR . . . F 2 54.102 28.221 7.251 0.95 65.7 ? H10 ZGR 400 B 1 
HETATM 35 H H11 ZGR . . . F 2 53.118 27.49 5.222 0.95 69.16 ? H11 ZGR 400 B 1 
HETATM 36 H H12 ZGR . . . F 2 55.007 27.47 4.067 0.95 71.87 ? H12 ZGR 400 B 1 
HETATM 37 H H13 ZGR . . . F 2 53.533 30.268 4.95 0.95 68.88 ? H13 ZGR 400 B 1 
HETATM 38 H H14 ZGR . . . F 2 52.193 29.475 4.66 0.95 68.88 ? H14 ZGR 400 B 1 
HETATM 39 H H15 ZGR . . . F 2 52.661 29.72 6.153 0.95 68.88 ? H15 ZGR 400 B 1 
HETATM 40 H H16 ZGR . . . F 2 53.953 31.354 10.049 0.95 63.12 ? H16 ZGR 400 B 1 
HETATM 41 H H17 ZGR . . . F 2 55.503 31.105 10.259 0.95 63.12 ? H17 ZGR 400 B 1 
HETATM 42 H H18 ZGR . . . F 2 54.817 29.409 11.487 0.95 58.62 ? H18 ZGR 400 B 1 
HETATM 43 H H19 ZGR . . . F 2 54.693 28.673 10.09 0.95 58.62 ? H19 ZGR 400 B 1 
HETATM 44 H H20 ZGR . . . F 2 52.665 28.55 11.452 0.95 57.41 ? H20 ZGR 400 B 1 
HETATM 45 H H21 ZGR . . . F 2 52.478 30.097 11.168 0.95 57.41 ? H21 ZGR 400 B 1 
HETATM 46 H H22 ZGR . . . F 2 52.974 28.974 8.753 0.95 59.23 ? H22 ZGR 400 B 1 
HETATM 47 H H23 ZGR . . . F 2 50.971 28.481 8.214 0.95 57.97 ? H23 ZGR 400 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           47 
#