data_8CLY # _model_server_result.job_id SjEPBOkTrb3S2wArM9pB5w _model_server_result.datetime_utc '2024-11-24 21:36:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cly # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 8CLY # _exptl.entry_id 8CLY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CLY _cell.length_a 125.344 _cell.length_b 125.344 _cell.length_c 115.227 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CLY _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 140 AAA CYS 134 1_555 C ZN ZN . AAA ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc2 A NZ LYS 143 AAA LYS 137 1_555 C ZN ZN . AAA ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc3 A SG CYS 194 AAA CYS 188 1_555 C ZN ZN . AAA ZN 401 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc4 C ZN ZN . AAA ZN 401 1_555 H O HOH . AAA HOH 513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.466 ? metalc ? metalc5 B SG CYS 140 BBB CYS 134 1_555 F ZN ZN . BBB ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc6 B NZ LYS 143 BBB LYS 137 1_555 F ZN ZN . BBB ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc7 B SG CYS 194 BBB CYS 188 1_555 F ZN ZN . BBB ZN 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc8 F ZN ZN . BBB ZN 401 1_555 I O HOH . BBB HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.393 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8CLY _atom_sites.fract_transf_matrix[1][1] 0.007978 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN AAA 1 401 336 ZN ZN . D 3 CL AAA 1 402 337 CL CL . E 3 CL AAA 1 403 338 CL CL . F 2 ZN BBB 1 401 336 ZN ZN . G 4 EDO BBB 1 402 343 EDO EDO . H 5 HOH AAA 1 501 139 HOH HOH . H 5 HOH AAA 2 502 41 HOH HOH . H 5 HOH AAA 3 503 16 HOH HOH . H 5 HOH AAA 4 504 128 HOH HOH . H 5 HOH AAA 5 505 57 HOH HOH . H 5 HOH AAA 6 506 32 HOH HOH . H 5 HOH AAA 7 507 106 HOH HOH . H 5 HOH AAA 8 508 157 HOH HOH . H 5 HOH AAA 9 509 342 HOH HOH . H 5 HOH AAA 10 510 79 HOH HOH . H 5 HOH AAA 11 511 80 HOH HOH . H 5 HOH AAA 12 512 149 HOH HOH . H 5 HOH AAA 13 513 40 HOH HOH . H 5 HOH AAA 14 514 123 HOH HOH . H 5 HOH AAA 15 515 154 HOH HOH . H 5 HOH AAA 16 516 33 HOH HOH . H 5 HOH AAA 17 517 43 HOH HOH . H 5 HOH AAA 18 518 5 HOH HOH . H 5 HOH AAA 19 519 17 HOH HOH . H 5 HOH AAA 20 520 344 HOH HOH . H 5 HOH AAA 21 521 122 HOH HOH . H 5 HOH AAA 22 522 30 HOH HOH . H 5 HOH AAA 23 523 340 HOH HOH . H 5 HOH AAA 24 524 155 HOH HOH . H 5 HOH AAA 25 525 159 HOH HOH . H 5 HOH AAA 26 526 31 HOH HOH . H 5 HOH AAA 27 527 21 HOH HOH . H 5 HOH AAA 28 528 133 HOH HOH . H 5 HOH AAA 29 529 52 HOH HOH . H 5 HOH AAA 30 530 74 HOH HOH . H 5 HOH AAA 31 531 45 HOH HOH . H 5 HOH AAA 32 532 73 HOH HOH . H 5 HOH AAA 33 533 59 HOH HOH . H 5 HOH AAA 34 534 2 HOH HOH . H 5 HOH AAA 35 535 67 HOH HOH . H 5 HOH AAA 36 536 14 HOH HOH . H 5 HOH AAA 37 537 343 HOH HOH . H 5 HOH AAA 38 538 69 HOH HOH . H 5 HOH AAA 39 539 26 HOH HOH . H 5 HOH AAA 40 540 135 HOH HOH . H 5 HOH AAA 41 541 113 HOH HOH . H 5 HOH AAA 42 542 145 HOH HOH . H 5 HOH AAA 43 543 141 HOH HOH . H 5 HOH AAA 44 544 44 HOH HOH . H 5 HOH AAA 45 545 126 HOH HOH . H 5 HOH AAA 46 546 341 HOH HOH . H 5 HOH AAA 47 547 61 HOH HOH . H 5 HOH AAA 48 548 47 HOH HOH . H 5 HOH AAA 49 549 120 HOH HOH . H 5 HOH AAA 50 550 117 HOH HOH . H 5 HOH AAA 51 551 85 HOH HOH . H 5 HOH AAA 52 552 53 HOH HOH . H 5 HOH AAA 53 553 9 HOH HOH . H 5 HOH AAA 54 554 140 HOH HOH . H 5 HOH AAA 55 555 87 HOH HOH . H 5 HOH AAA 56 556 55 HOH HOH . H 5 HOH AAA 57 557 23 HOH HOH . H 5 HOH AAA 58 558 144 HOH HOH . H 5 HOH AAA 59 559 152 HOH HOH . H 5 HOH AAA 60 560 42 HOH HOH . H 5 HOH AAA 61 561 127 HOH HOH . H 5 HOH AAA 62 562 156 HOH HOH . H 5 HOH AAA 63 563 72 HOH HOH . H 5 HOH AAA 64 564 89 HOH HOH . H 5 HOH AAA 65 565 129 HOH HOH . H 5 HOH AAA 66 566 112 HOH HOH . H 5 HOH AAA 67 567 1 HOH HOH . H 5 HOH AAA 68 568 339 HOH HOH . H 5 HOH AAA 69 569 71 HOH HOH . H 5 HOH AAA 70 570 134 HOH HOH . H 5 HOH AAA 71 571 88 HOH HOH . H 5 HOH AAA 72 572 104 HOH HOH . H 5 HOH AAA 73 573 105 HOH HOH . H 5 HOH AAA 74 574 63 HOH HOH . H 5 HOH AAA 75 575 22 HOH HOH . H 5 HOH AAA 76 576 86 HOH HOH . H 5 HOH AAA 77 577 83 HOH HOH . H 5 HOH AAA 78 578 34 HOH HOH . H 5 HOH AAA 79 579 29 HOH HOH . H 5 HOH AAA 80 580 131 HOH HOH . H 5 HOH AAA 81 581 77 HOH HOH . H 5 HOH AAA 82 582 146 HOH HOH . H 5 HOH AAA 83 583 150 HOH HOH . H 5 HOH AAA 84 584 103 HOH HOH . H 5 HOH AAA 85 585 121 HOH HOH . H 5 HOH AAA 86 586 132 HOH HOH . H 5 HOH AAA 87 587 19 HOH HOH . H 5 HOH AAA 88 588 142 HOH HOH . H 5 HOH AAA 89 589 143 HOH HOH . I 5 HOH BBB 1 501 339 HOH HOH . I 5 HOH BBB 2 502 119 HOH HOH . I 5 HOH BBB 3 503 76 HOH HOH . I 5 HOH BBB 4 504 84 HOH HOH . I 5 HOH BBB 5 505 39 HOH HOH . I 5 HOH BBB 6 506 35 HOH HOH . I 5 HOH BBB 7 507 36 HOH HOH . I 5 HOH BBB 8 508 93 HOH HOH . I 5 HOH BBB 9 509 109 HOH HOH . I 5 HOH BBB 10 510 138 HOH HOH . I 5 HOH BBB 11 511 107 HOH HOH . I 5 HOH BBB 12 512 4 HOH HOH . I 5 HOH BBB 13 513 51 HOH HOH . I 5 HOH BBB 14 514 37 HOH HOH . I 5 HOH BBB 15 515 148 HOH HOH . I 5 HOH BBB 16 516 46 HOH HOH . I 5 HOH BBB 17 517 3 HOH HOH . I 5 HOH BBB 18 518 98 HOH HOH . I 5 HOH BBB 19 519 340 HOH HOH . I 5 HOH BBB 20 520 66 HOH HOH . I 5 HOH BBB 21 521 91 HOH HOH . I 5 HOH BBB 22 522 108 HOH HOH . I 5 HOH BBB 23 523 341 HOH HOH . I 5 HOH BBB 24 524 28 HOH HOH . I 5 HOH BBB 25 525 24 HOH HOH . I 5 HOH BBB 26 526 81 HOH HOH . I 5 HOH BBB 27 527 92 HOH HOH . I 5 HOH BBB 28 528 64 HOH HOH . I 5 HOH BBB 29 529 110 HOH HOH . I 5 HOH BBB 30 530 6 HOH HOH . I 5 HOH BBB 31 531 20 HOH HOH . I 5 HOH BBB 32 532 137 HOH HOH . I 5 HOH BBB 33 533 136 HOH HOH . I 5 HOH BBB 34 534 125 HOH HOH . I 5 HOH BBB 35 535 147 HOH HOH . I 5 HOH BBB 36 536 96 HOH HOH . I 5 HOH BBB 37 537 118 HOH HOH . I 5 HOH BBB 38 538 95 HOH HOH . I 5 HOH BBB 39 539 58 HOH HOH . I 5 HOH BBB 40 540 48 HOH HOH . I 5 HOH BBB 41 541 25 HOH HOH . I 5 HOH BBB 42 542 75 HOH HOH . I 5 HOH BBB 43 543 7 HOH HOH . I 5 HOH BBB 44 544 11 HOH HOH . I 5 HOH BBB 45 545 38 HOH HOH . I 5 HOH BBB 46 546 78 HOH HOH . I 5 HOH BBB 47 547 111 HOH HOH . I 5 HOH BBB 48 548 65 HOH HOH . I 5 HOH BBB 49 549 115 HOH HOH . I 5 HOH BBB 50 550 100 HOH HOH . I 5 HOH BBB 51 551 18 HOH HOH . I 5 HOH BBB 52 552 27 HOH HOH . I 5 HOH BBB 53 553 116 HOH HOH . I 5 HOH BBB 54 554 102 HOH HOH . I 5 HOH BBB 55 555 90 HOH HOH . I 5 HOH BBB 56 556 70 HOH HOH . I 5 HOH BBB 57 557 56 HOH HOH . I 5 HOH BBB 58 558 101 HOH HOH . I 5 HOH BBB 59 559 99 HOH HOH . I 5 HOH BBB 60 560 82 HOH HOH . I 5 HOH BBB 61 561 130 HOH HOH . I 5 HOH BBB 62 562 60 HOH HOH . I 5 HOH BBB 63 563 8 HOH HOH . I 5 HOH BBB 64 564 153 HOH HOH . I 5 HOH BBB 65 565 114 HOH HOH . I 5 HOH BBB 66 566 94 HOH HOH . I 5 HOH BBB 67 567 151 HOH HOH . I 5 HOH BBB 68 568 12 HOH HOH . I 5 HOH BBB 69 569 97 HOH HOH . I 5 HOH BBB 70 570 124 HOH HOH . I 5 HOH BBB 71 571 158 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 -0.043 27.624 23.873 1 73.9 0 C1 EDO 402 BBB 1 HETATM 2 O O1 EDO . . . G 4 1.185 28.141 24.407 1 73.57 0 O1 EDO 402 BBB 1 HETATM 3 C C2 EDO . . . G 4 -0.506 26.365 24.554 1 71.84 0 C2 EDO 402 BBB 1 HETATM 4 O O2 EDO . . . G 4 -1.911 26.18 24.612 1 66.17 0 O2 EDO 402 BBB 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #