data_8CM7
#
_model_server_result.job_id            3XlIvi_vryxVjPC7B6u5rQ 
_model_server_result.datetime_utc      '2024-11-14 04:12:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cm7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1108}' 
#
_entry.id    8CM7 
#
_exptl.entry_id    8CM7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          9 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8CM7 
_cell.length_a            64.874 
_cell.length_b            123.833 
_cell.length_c            149.891 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CM7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 9 J N N 
? 9 L N N 
? 9 N N N 
? 9 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 845 A CYS 845 1_555 A SG CYS 872 A CYS 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? 
metalc ? metalc1 A SG CYS 50 A CYS 50 1_555 E FE3 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc2 A SG CYS 53 A CYS 53 1_555 E FE1 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? 
metalc ? metalc3 A SG CYS 57 A CYS 57 1_555 E FE2 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? 
metalc ? metalc4 A SG CYS 88 A CYS 88 1_555 E FE4 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? 
metalc ? metalc5 C S12 MGD . A MGD 1101 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? 
metalc ? metalc6 C S13 MGD . A MGD 1101 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? 
metalc ? metalc7 D S13 MGD . A MGD 1102 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? 
metalc ? metalc8 F S H2S . A H2S 1104 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? 
metalc ? metalc9 B SG CYS 12 B CYS 12 1_555 S FE4 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? 
metalc ? metalc10 B SG CYS 15 B CYS 15 1_555 S FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? 
metalc ? metalc11 B SG CYS 18 B CYS 18 1_555 S FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? 
metalc ? metalc12 B SG CYS 22 B CYS 22 1_555 U FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? 
metalc ? metalc13 B SG CYS 74 B CYS 74 1_555 T FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? 
metalc ? metalc14 B SG CYS 77 B CYS 77 1_555 T FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? 
metalc ? metalc15 B SG CYS 82 B CYS 82 1_555 T FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? 
metalc ? metalc16 B SG CYS 121 B CYS 121 1_555 T FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
metalc ? metalc17 B SG CYS 138 B CYS 138 1_555 U FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? 
metalc ? metalc18 B SG CYS 141 B CYS 141 1_555 U FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
metalc ? metalc19 B SG CYS 153 B CYS 153 1_555 U FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc20 B SG CYS 157 B CYS 157 1_555 S FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8CM7 
_atom_sites.fract_transf_matrix[1][1]    0.015414 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008075 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006672 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 MGD A 1 1101 1101 MGD MGD . 
D 3 MGD A 1 1102 1102 MGD MGD . 
E 4 SF4 A 1 1103 1103 SF4 SF4 . 
F 5 H2S A 1 1104 1109 H2S H2S . 
G 6 W A 1 1105 1110 W W . 
H 7 GOL A 1 1106 1201 GOL GOL . 
I 8 PEG A 1 1107 1301 PEG PEG . 
J 9 EDO A 1 1108 1401 EDO EDO . 
K 7 GOL A 1 1109 1501 GOL GOL . 
L 9 EDO A 1 1110 1601 EDO EDO . 
M 7 GOL A 1 1111 1701 GOL GOL . 
N 9 EDO A 1 1112 1801 EDO EDO . 
O 8 PEG A 1 1113 1901 PEG PEG . 
P 9 EDO A 1 1114 2001 EDO EDO . 
Q 10 CL A 1 1115 1 CL CL . 
R 10 CL A 1 1116 3 CL CL . 
S 4 SF4 B 1 301 301 SF4 SF4 . 
T 4 SF4 B 1 302 302 SF4 SF4 . 
U 4 SF4 B 1 303 303 SF4 SF4 . 
V 8 PEG B 1 304 401 PEG PEG . 
W 11 HOH A 1 1201 83 HOH HOH . 
W 11 HOH A 2 1202 53 HOH HOH . 
W 11 HOH A 3 1203 48 HOH HOH . 
W 11 HOH A 4 1204 165 HOH HOH . 
W 11 HOH A 5 1205 100 HOH HOH . 
W 11 HOH A 6 1206 141 HOH HOH . 
W 11 HOH A 7 1207 99 HOH HOH . 
W 11 HOH A 8 1208 102 HOH HOH . 
W 11 HOH A 9 1209 60 HOH HOH . 
W 11 HOH A 10 1210 70 HOH HOH . 
W 11 HOH A 11 1211 4 HOH HOH . 
W 11 HOH A 12 1212 44 HOH HOH . 
W 11 HOH A 13 1213 55 HOH HOH . 
W 11 HOH A 14 1214 88 HOH HOH . 
W 11 HOH A 15 1215 72 HOH HOH . 
W 11 HOH A 16 1216 107 HOH HOH . 
W 11 HOH A 17 1217 54 HOH HOH . 
W 11 HOH A 18 1218 81 HOH HOH . 
W 11 HOH A 19 1219 59 HOH HOH . 
W 11 HOH A 20 1220 94 HOH HOH . 
W 11 HOH A 21 1221 43 HOH HOH . 
W 11 HOH A 22 1222 89 HOH HOH . 
W 11 HOH A 23 1223 66 HOH HOH . 
W 11 HOH A 24 1224 144 HOH HOH . 
W 11 HOH A 25 1225 71 HOH HOH . 
W 11 HOH A 26 1226 90 HOH HOH . 
W 11 HOH A 27 1227 176 HOH HOH . 
W 11 HOH A 28 1228 84 HOH HOH . 
W 11 HOH A 29 1229 64 HOH HOH . 
W 11 HOH A 30 1230 114 HOH HOH . 
W 11 HOH A 31 1231 8 HOH HOH . 
W 11 HOH A 32 1232 23 HOH HOH . 
W 11 HOH A 33 1233 78 HOH HOH . 
W 11 HOH A 34 1234 87 HOH HOH . 
W 11 HOH A 35 1235 80 HOH HOH . 
W 11 HOH A 36 1236 2 HOH HOH . 
W 11 HOH A 37 1237 32 HOH HOH . 
W 11 HOH A 38 1238 82 HOH HOH . 
W 11 HOH A 39 1239 97 HOH HOH . 
W 11 HOH A 40 1240 104 HOH HOH . 
W 11 HOH A 41 1241 109 HOH HOH . 
W 11 HOH A 42 1242 125 HOH HOH . 
W 11 HOH A 43 1243 106 HOH HOH . 
W 11 HOH A 44 1244 116 HOH HOH . 
W 11 HOH A 45 1245 37 HOH HOH . 
W 11 HOH A 46 1246 96 HOH HOH . 
W 11 HOH A 47 1247 24 HOH HOH . 
W 11 HOH A 48 1248 21 HOH HOH . 
W 11 HOH A 49 1249 51 HOH HOH . 
W 11 HOH A 50 1250 117 HOH HOH . 
W 11 HOH A 51 1251 33 HOH HOH . 
W 11 HOH A 52 1252 38 HOH HOH . 
W 11 HOH A 53 1253 140 HOH HOH . 
W 11 HOH A 54 1254 118 HOH HOH . 
W 11 HOH A 55 1255 22 HOH HOH . 
W 11 HOH A 56 1256 113 HOH HOH . 
W 11 HOH A 57 1257 135 HOH HOH . 
W 11 HOH A 58 1258 73 HOH HOH . 
W 11 HOH A 59 1259 39 HOH HOH . 
W 11 HOH A 60 1260 31 HOH HOH . 
W 11 HOH A 61 1261 18 HOH HOH . 
W 11 HOH A 62 1262 35 HOH HOH . 
W 11 HOH A 63 1263 68 HOH HOH . 
W 11 HOH A 64 1264 28 HOH HOH . 
W 11 HOH A 65 1265 128 HOH HOH . 
W 11 HOH A 66 1266 138 HOH HOH . 
W 11 HOH A 67 1267 63 HOH HOH . 
W 11 HOH A 68 1268 152 HOH HOH . 
W 11 HOH A 69 1269 74 HOH HOH . 
W 11 HOH A 70 1270 36 HOH HOH . 
W 11 HOH A 71 1271 40 HOH HOH . 
W 11 HOH A 72 1272 110 HOH HOH . 
W 11 HOH A 73 1273 9 HOH HOH . 
W 11 HOH A 74 1274 49 HOH HOH . 
W 11 HOH A 75 1275 157 HOH HOH . 
W 11 HOH A 76 1276 61 HOH HOH . 
W 11 HOH A 77 1277 45 HOH HOH . 
W 11 HOH A 78 1278 137 HOH HOH . 
W 11 HOH A 79 1279 57 HOH HOH . 
W 11 HOH A 80 1280 20 HOH HOH . 
W 11 HOH A 81 1281 7 HOH HOH . 
W 11 HOH A 82 1282 14 HOH HOH . 
W 11 HOH A 83 1283 16 HOH HOH . 
W 11 HOH A 84 1284 69 HOH HOH . 
W 11 HOH A 85 1285 111 HOH HOH . 
W 11 HOH A 86 1286 67 HOH HOH . 
W 11 HOH A 87 1287 12 HOH HOH . 
W 11 HOH A 88 1288 13 HOH HOH . 
W 11 HOH A 89 1289 160 HOH HOH . 
W 11 HOH A 90 1290 41 HOH HOH . 
W 11 HOH A 91 1291 77 HOH HOH . 
W 11 HOH A 92 1292 19 HOH HOH . 
W 11 HOH A 93 1293 101 HOH HOH . 
W 11 HOH A 94 1294 42 HOH HOH . 
W 11 HOH A 95 1295 3 HOH HOH . 
W 11 HOH A 96 1296 79 HOH HOH . 
W 11 HOH A 97 1297 6 HOH HOH . 
W 11 HOH A 98 1298 5 HOH HOH . 
W 11 HOH A 99 1299 47 HOH HOH . 
W 11 HOH A 100 1300 75 HOH HOH . 
W 11 HOH A 101 1301 85 HOH HOH . 
W 11 HOH A 102 1302 167 HOH HOH . 
W 11 HOH A 103 1303 195 HOH HOH . 
W 11 HOH A 104 1304 120 HOH HOH . 
W 11 HOH A 105 1305 193 HOH HOH . 
W 11 HOH A 106 1306 34 HOH HOH . 
W 11 HOH A 107 1307 27 HOH HOH . 
W 11 HOH A 108 1308 50 HOH HOH . 
W 11 HOH A 109 1309 119 HOH HOH . 
W 11 HOH A 110 1310 76 HOH HOH . 
W 11 HOH A 111 1311 146 HOH HOH . 
W 11 HOH A 112 1312 173 HOH HOH . 
W 11 HOH A 113 1313 131 HOH HOH . 
W 11 HOH A 114 1314 192 HOH HOH . 
W 11 HOH A 115 1315 95 HOH HOH . 
W 11 HOH A 116 1316 11 HOH HOH . 
W 11 HOH A 117 1317 145 HOH HOH . 
W 11 HOH A 118 1318 93 HOH HOH . 
W 11 HOH A 119 1319 166 HOH HOH . 
W 11 HOH A 120 1320 147 HOH HOH . 
W 11 HOH A 121 1321 91 HOH HOH . 
W 11 HOH A 122 1322 172 HOH HOH . 
W 11 HOH A 123 1323 56 HOH HOH . 
W 11 HOH A 124 1324 130 HOH HOH . 
W 11 HOH A 125 1325 143 HOH HOH . 
W 11 HOH A 126 1326 139 HOH HOH . 
W 11 HOH A 127 1327 194 HOH HOH . 
W 11 HOH A 128 1328 191 HOH HOH . 
W 11 HOH A 129 1329 149 HOH HOH . 
W 11 HOH A 130 1330 129 HOH HOH . 
W 11 HOH A 131 1331 126 HOH HOH . 
W 11 HOH A 132 1332 154 HOH HOH . 
W 11 HOH A 133 1333 168 HOH HOH . 
W 11 HOH A 134 1334 122 HOH HOH . 
W 11 HOH A 135 1335 10 HOH HOH . 
W 11 HOH A 136 1336 153 HOH HOH . 
W 11 HOH A 137 1337 127 HOH HOH . 
X 11 HOH B 1 401 86 HOH HOH . 
X 11 HOH B 2 402 115 HOH HOH . 
X 11 HOH B 3 403 58 HOH HOH . 
X 11 HOH B 4 404 189 HOH HOH . 
X 11 HOH B 5 405 105 HOH HOH . 
X 11 HOH B 6 406 188 HOH HOH . 
X 11 HOH B 7 407 112 HOH HOH . 
X 11 HOH B 8 408 103 HOH HOH . 
X 11 HOH B 9 409 15 HOH HOH . 
X 11 HOH B 10 410 25 HOH HOH . 
X 11 HOH B 11 411 182 HOH HOH . 
X 11 HOH B 12 412 26 HOH HOH . 
X 11 HOH B 13 413 124 HOH HOH . 
X 11 HOH B 14 414 52 HOH HOH . 
X 11 HOH B 15 415 30 HOH HOH . 
X 11 HOH B 16 416 1 HOH HOH . 
X 11 HOH B 17 417 184 HOH HOH . 
X 11 HOH B 18 418 175 HOH HOH . 
X 11 HOH B 19 419 62 HOH HOH . 
X 11 HOH B 20 420 65 HOH HOH . 
X 11 HOH B 21 421 17 HOH HOH . 
X 11 HOH B 22 422 46 HOH HOH . 
X 11 HOH B 23 423 29 HOH HOH . 
X 11 HOH B 24 424 179 HOH HOH . 
X 11 HOH B 25 425 108 HOH HOH . 
X 11 HOH B 26 426 183 HOH HOH . 
X 11 HOH B 27 427 190 HOH HOH . 
X 11 HOH B 28 428 178 HOH HOH . 
X 11 HOH B 29 429 181 HOH HOH . 
X 11 HOH B 30 430 180 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . J 9 0.274 -14.459 -17.024 1 41.38 0 C1 EDO 1108 A 1 
HETATM 2 O O1 EDO . . . J 9 -0.729 -13.469 -16.719 1 41.85 0 O1 EDO 1108 A 1 
HETATM 3 C C2 EDO . . . J 9 1.253 -14.028 -18.061 1 38.39 0 C2 EDO 1108 A 1 
HETATM 4 O O2 EDO . . . J 9 2.396 -14.861 -18.187 1 38.21 0 O2 EDO 1108 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    50 
_model_server_stats.query_time_ms           389 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           4 
#