data_8CM7 # _model_server_result.job_id QHt5P0aXiYCBt265bEMYqQ _model_server_result.datetime_utc '2024-11-24 14:32:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cm7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":301}' # _entry.id 8CM7 # _exptl.entry_id 8CM7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 351.64 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IRON/SULFUR CLUSTER' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CM7 _cell.length_a 64.874 _cell.length_b 123.833 _cell.length_c 149.891 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CM7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 S N N ? 4 T N N ? 4 U N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 845 A CYS 845 1_555 A SG CYS 872 A CYS 872 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc1 A SG CYS 50 A CYS 50 1_555 E FE3 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? metalc ? metalc2 A SG CYS 53 A CYS 53 1_555 E FE1 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.199 ? metalc ? metalc3 A SG CYS 57 A CYS 57 1_555 E FE2 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.237 ? metalc ? metalc4 A SG CYS 88 A CYS 88 1_555 E FE4 SF4 . A SF4 1103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.232 ? metalc ? metalc5 C S12 MGD . A MGD 1101 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.625 ? metalc ? metalc6 C S13 MGD . A MGD 1101 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.615 ? metalc ? metalc7 D S13 MGD . A MGD 1102 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.751 ? metalc ? metalc8 F S H2S . A H2S 1104 1_555 G W W . A W 1105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.486 ? metalc ? metalc9 B SG CYS 12 B CYS 12 1_555 S FE4 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc10 B SG CYS 15 B CYS 15 1_555 S FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc11 B SG CYS 18 B CYS 18 1_555 S FE2 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc12 B SG CYS 22 B CYS 22 1_555 U FE4 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc13 B SG CYS 74 B CYS 74 1_555 T FE3 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.523 ? metalc ? metalc14 B SG CYS 77 B CYS 77 1_555 T FE1 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc15 B SG CYS 82 B CYS 82 1_555 T FE2 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc16 B SG CYS 121 B CYS 121 1_555 T FE4 SF4 . B SF4 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? metalc ? metalc17 B SG CYS 138 B CYS 138 1_555 U FE1 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc18 B SG CYS 141 B CYS 141 1_555 U FE2 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? metalc ? metalc19 B SG CYS 153 B CYS 153 1_555 U FE3 SF4 . B SF4 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc20 B SG CYS 157 B CYS 157 1_555 S FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? # _chem_comp.formula 'Fe4 S4' _chem_comp.formula_weight 351.64 _chem_comp.id SF4 _chem_comp.mon_nstd_flag . _chem_comp.name 'IRON/SULFUR CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S2 SF4 sing 421 n n FE1 S3 SF4 sing 422 n n FE1 S4 SF4 sing 423 n n FE2 S1 SF4 sing 424 n n FE2 S3 SF4 sing 425 n n FE2 S4 SF4 sing 426 n n FE3 S1 SF4 sing 427 n n FE3 S2 SF4 sing 428 n n FE3 S4 SF4 sing 429 n n FE4 S1 SF4 sing 430 n n FE4 S2 SF4 sing 431 n n FE4 S3 SF4 sing 432 n n # _atom_sites.entry_id 8CM7 _atom_sites.fract_transf_matrix[1][1] 0.015414 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008075 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006672 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MGD A 1 1101 1101 MGD MGD . D 3 MGD A 1 1102 1102 MGD MGD . E 4 SF4 A 1 1103 1103 SF4 SF4 . F 5 H2S A 1 1104 1109 H2S H2S . G 6 W A 1 1105 1110 W W . H 7 GOL A 1 1106 1201 GOL GOL . I 8 PEG A 1 1107 1301 PEG PEG . J 9 EDO A 1 1108 1401 EDO EDO . K 7 GOL A 1 1109 1501 GOL GOL . L 9 EDO A 1 1110 1601 EDO EDO . M 7 GOL A 1 1111 1701 GOL GOL . N 9 EDO A 1 1112 1801 EDO EDO . O 8 PEG A 1 1113 1901 PEG PEG . P 9 EDO A 1 1114 2001 EDO EDO . Q 10 CL A 1 1115 1 CL CL . R 10 CL A 1 1116 3 CL CL . S 4 SF4 B 1 301 301 SF4 SF4 . T 4 SF4 B 1 302 302 SF4 SF4 . U 4 SF4 B 1 303 303 SF4 SF4 . V 8 PEG B 1 304 401 PEG PEG . W 11 HOH A 1 1201 83 HOH HOH . W 11 HOH A 2 1202 53 HOH HOH . W 11 HOH A 3 1203 48 HOH HOH . W 11 HOH A 4 1204 165 HOH HOH . W 11 HOH A 5 1205 100 HOH HOH . W 11 HOH A 6 1206 141 HOH HOH . W 11 HOH A 7 1207 99 HOH HOH . W 11 HOH A 8 1208 102 HOH HOH . W 11 HOH A 9 1209 60 HOH HOH . W 11 HOH A 10 1210 70 HOH HOH . W 11 HOH A 11 1211 4 HOH HOH . W 11 HOH A 12 1212 44 HOH HOH . W 11 HOH A 13 1213 55 HOH HOH . W 11 HOH A 14 1214 88 HOH HOH . W 11 HOH A 15 1215 72 HOH HOH . W 11 HOH A 16 1216 107 HOH HOH . W 11 HOH A 17 1217 54 HOH HOH . W 11 HOH A 18 1218 81 HOH HOH . W 11 HOH A 19 1219 59 HOH HOH . W 11 HOH A 20 1220 94 HOH HOH . W 11 HOH A 21 1221 43 HOH HOH . W 11 HOH A 22 1222 89 HOH HOH . W 11 HOH A 23 1223 66 HOH HOH . W 11 HOH A 24 1224 144 HOH HOH . W 11 HOH A 25 1225 71 HOH HOH . W 11 HOH A 26 1226 90 HOH HOH . W 11 HOH A 27 1227 176 HOH HOH . W 11 HOH A 28 1228 84 HOH HOH . W 11 HOH A 29 1229 64 HOH HOH . W 11 HOH A 30 1230 114 HOH HOH . W 11 HOH A 31 1231 8 HOH HOH . W 11 HOH A 32 1232 23 HOH HOH . W 11 HOH A 33 1233 78 HOH HOH . W 11 HOH A 34 1234 87 HOH HOH . W 11 HOH A 35 1235 80 HOH HOH . W 11 HOH A 36 1236 2 HOH HOH . W 11 HOH A 37 1237 32 HOH HOH . W 11 HOH A 38 1238 82 HOH HOH . W 11 HOH A 39 1239 97 HOH HOH . W 11 HOH A 40 1240 104 HOH HOH . W 11 HOH A 41 1241 109 HOH HOH . W 11 HOH A 42 1242 125 HOH HOH . W 11 HOH A 43 1243 106 HOH HOH . W 11 HOH A 44 1244 116 HOH HOH . W 11 HOH A 45 1245 37 HOH HOH . W 11 HOH A 46 1246 96 HOH HOH . W 11 HOH A 47 1247 24 HOH HOH . W 11 HOH A 48 1248 21 HOH HOH . W 11 HOH A 49 1249 51 HOH HOH . W 11 HOH A 50 1250 117 HOH HOH . W 11 HOH A 51 1251 33 HOH HOH . W 11 HOH A 52 1252 38 HOH HOH . W 11 HOH A 53 1253 140 HOH HOH . W 11 HOH A 54 1254 118 HOH HOH . W 11 HOH A 55 1255 22 HOH HOH . W 11 HOH A 56 1256 113 HOH HOH . W 11 HOH A 57 1257 135 HOH HOH . W 11 HOH A 58 1258 73 HOH HOH . W 11 HOH A 59 1259 39 HOH HOH . W 11 HOH A 60 1260 31 HOH HOH . W 11 HOH A 61 1261 18 HOH HOH . W 11 HOH A 62 1262 35 HOH HOH . W 11 HOH A 63 1263 68 HOH HOH . W 11 HOH A 64 1264 28 HOH HOH . W 11 HOH A 65 1265 128 HOH HOH . W 11 HOH A 66 1266 138 HOH HOH . W 11 HOH A 67 1267 63 HOH HOH . W 11 HOH A 68 1268 152 HOH HOH . W 11 HOH A 69 1269 74 HOH HOH . W 11 HOH A 70 1270 36 HOH HOH . W 11 HOH A 71 1271 40 HOH HOH . W 11 HOH A 72 1272 110 HOH HOH . W 11 HOH A 73 1273 9 HOH HOH . W 11 HOH A 74 1274 49 HOH HOH . W 11 HOH A 75 1275 157 HOH HOH . W 11 HOH A 76 1276 61 HOH HOH . W 11 HOH A 77 1277 45 HOH HOH . W 11 HOH A 78 1278 137 HOH HOH . W 11 HOH A 79 1279 57 HOH HOH . W 11 HOH A 80 1280 20 HOH HOH . W 11 HOH A 81 1281 7 HOH HOH . W 11 HOH A 82 1282 14 HOH HOH . W 11 HOH A 83 1283 16 HOH HOH . W 11 HOH A 84 1284 69 HOH HOH . W 11 HOH A 85 1285 111 HOH HOH . W 11 HOH A 86 1286 67 HOH HOH . W 11 HOH A 87 1287 12 HOH HOH . W 11 HOH A 88 1288 13 HOH HOH . W 11 HOH A 89 1289 160 HOH HOH . W 11 HOH A 90 1290 41 HOH HOH . W 11 HOH A 91 1291 77 HOH HOH . W 11 HOH A 92 1292 19 HOH HOH . W 11 HOH A 93 1293 101 HOH HOH . W 11 HOH A 94 1294 42 HOH HOH . W 11 HOH A 95 1295 3 HOH HOH . W 11 HOH A 96 1296 79 HOH HOH . W 11 HOH A 97 1297 6 HOH HOH . W 11 HOH A 98 1298 5 HOH HOH . W 11 HOH A 99 1299 47 HOH HOH . W 11 HOH A 100 1300 75 HOH HOH . W 11 HOH A 101 1301 85 HOH HOH . W 11 HOH A 102 1302 167 HOH HOH . W 11 HOH A 103 1303 195 HOH HOH . W 11 HOH A 104 1304 120 HOH HOH . W 11 HOH A 105 1305 193 HOH HOH . W 11 HOH A 106 1306 34 HOH HOH . W 11 HOH A 107 1307 27 HOH HOH . W 11 HOH A 108 1308 50 HOH HOH . W 11 HOH A 109 1309 119 HOH HOH . W 11 HOH A 110 1310 76 HOH HOH . W 11 HOH A 111 1311 146 HOH HOH . W 11 HOH A 112 1312 173 HOH HOH . W 11 HOH A 113 1313 131 HOH HOH . W 11 HOH A 114 1314 192 HOH HOH . W 11 HOH A 115 1315 95 HOH HOH . W 11 HOH A 116 1316 11 HOH HOH . W 11 HOH A 117 1317 145 HOH HOH . W 11 HOH A 118 1318 93 HOH HOH . W 11 HOH A 119 1319 166 HOH HOH . W 11 HOH A 120 1320 147 HOH HOH . W 11 HOH A 121 1321 91 HOH HOH . W 11 HOH A 122 1322 172 HOH HOH . W 11 HOH A 123 1323 56 HOH HOH . W 11 HOH A 124 1324 130 HOH HOH . W 11 HOH A 125 1325 143 HOH HOH . W 11 HOH A 126 1326 139 HOH HOH . W 11 HOH A 127 1327 194 HOH HOH . W 11 HOH A 128 1328 191 HOH HOH . W 11 HOH A 129 1329 149 HOH HOH . W 11 HOH A 130 1330 129 HOH HOH . W 11 HOH A 131 1331 126 HOH HOH . W 11 HOH A 132 1332 154 HOH HOH . W 11 HOH A 133 1333 168 HOH HOH . W 11 HOH A 134 1334 122 HOH HOH . W 11 HOH A 135 1335 10 HOH HOH . W 11 HOH A 136 1336 153 HOH HOH . W 11 HOH A 137 1337 127 HOH HOH . X 11 HOH B 1 401 86 HOH HOH . X 11 HOH B 2 402 115 HOH HOH . X 11 HOH B 3 403 58 HOH HOH . X 11 HOH B 4 404 189 HOH HOH . X 11 HOH B 5 405 105 HOH HOH . X 11 HOH B 6 406 188 HOH HOH . X 11 HOH B 7 407 112 HOH HOH . X 11 HOH B 8 408 103 HOH HOH . X 11 HOH B 9 409 15 HOH HOH . X 11 HOH B 10 410 25 HOH HOH . X 11 HOH B 11 411 182 HOH HOH . X 11 HOH B 12 412 26 HOH HOH . X 11 HOH B 13 413 124 HOH HOH . X 11 HOH B 14 414 52 HOH HOH . X 11 HOH B 15 415 30 HOH HOH . X 11 HOH B 16 416 1 HOH HOH . X 11 HOH B 17 417 184 HOH HOH . X 11 HOH B 18 418 175 HOH HOH . X 11 HOH B 19 419 62 HOH HOH . X 11 HOH B 20 420 65 HOH HOH . X 11 HOH B 21 421 17 HOH HOH . X 11 HOH B 22 422 46 HOH HOH . X 11 HOH B 23 423 29 HOH HOH . X 11 HOH B 24 424 179 HOH HOH . X 11 HOH B 25 425 108 HOH HOH . X 11 HOH B 26 426 183 HOH HOH . X 11 HOH B 27 427 190 HOH HOH . X 11 HOH B 28 428 178 HOH HOH . X 11 HOH B 29 429 181 HOH HOH . X 11 HOH B 30 430 180 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 SF4 . . . S 4 -9.159 13.251 -48.127 1 28.98 0 FE1 SF4 301 B 1 HETATM 2 FE FE2 SF4 . . . S 4 -10.917 15.086 -49.042 1 25.5 0 FE2 SF4 301 B 1 HETATM 3 FE FE3 SF4 . . . S 4 -11.606 13.49 -46.957 1 25.49 0 FE3 SF4 301 B 1 HETATM 4 FE FE4 SF4 . . . S 4 -11.442 12.441 -49.474 1 27.5 0 FE4 SF4 301 B 1 HETATM 5 S S1 SF4 . . . S 4 -12.896 14.001 -48.777 1 26.35 0 S1 SF4 301 B 1 HETATM 6 S S2 SF4 . . . S 4 -10.576 11.555 -47.535 1 26.7 0 S2 SF4 301 B 1 HETATM 7 S S3 SF4 . . . S 4 -9.711 13.632 -50.297 1 27.75 0 S3 SF4 301 B 1 HETATM 8 S S4 SF4 . . . S 4 -9.899 15.059 -47.032 1 26.9 0 S4 SF4 301 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 384 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #