data_8CMF # _model_server_result.job_id jn7Sk0GaPDC6e8mN6nuQfA _model_server_result.datetime_utc '2024-11-21 13:05:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cmf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":202}' # _entry.id 8CMF # _exptl.entry_id 8CMF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.088 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SUCCINIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CMF _cell.length_a 60.23 _cell.length_b 95.49 _cell.length_c 202.43 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CMF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? trimeric 3 author_defined_assembly 1 ? trimeric 3 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,M,N,O 1 1 D,E,F,I,J,K,L,P,Q,R 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 108 A CYS 107 1_555 A SG CYS 164 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 B SG CYS 19 B CYS 15 1_555 B SG CYS 83 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf3 B SG CYS 121 B CYS 117 1_555 B SG CYS 177 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 D SG CYS 108 D CYS 107 1_555 D SG CYS 164 D CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 E SG CYS 19 E CYS 15 1_555 E SG CYS 83 E CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf6 E SG CYS 121 E CYS 117 1_555 E SG CYS 177 E CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C4 H6 O4' _chem_comp.formula_weight 118.088 _chem_comp.id SIN _chem_comp.mon_nstd_flag . _chem_comp.name 'SUCCINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 SIN doub 299 n n C1 O2 SIN sing 300 n n C1 C2 SIN sing 301 n n O2 HO2 SIN sing 302 n n C2 C3 SIN sing 303 n n C2 H21 SIN sing 304 n n C2 H22 SIN sing 305 n n C3 C4 SIN sing 306 n n C3 H31 SIN sing 307 n n C3 H32 SIN sing 308 n n C4 O3 SIN doub 309 n n C4 O4 SIN sing 310 n n O4 HO4 SIN sing 311 n n # _atom_sites.entry_id 8CMF _atom_sites.fract_transf_matrix[1][1] 0.016603 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010472 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00494 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 EDO B 1 201 2 EDO EDO . H 5 SIN B 1 202 102 SIN SIN . I 4 EDO D 1 201 4 EDO EDO . J 4 EDO E 1 201 1 EDO EDO . K 4 EDO E 1 202 3 EDO EDO . L 5 SIN E 1 203 101 SIN SIN . M 6 HOH A 1 201 176 HOH HOH . M 6 HOH A 2 202 151 HOH HOH . M 6 HOH A 3 203 149 HOH HOH . M 6 HOH A 4 204 195 HOH HOH . M 6 HOH A 5 205 148 HOH HOH . M 6 HOH A 6 206 100 HOH HOH . M 6 HOH A 7 207 183 HOH HOH . M 6 HOH A 8 208 178 HOH HOH . M 6 HOH A 9 209 157 HOH HOH . M 6 HOH A 10 210 75 HOH HOH . M 6 HOH A 11 211 55 HOH HOH . M 6 HOH A 12 212 98 HOH HOH . M 6 HOH A 13 213 110 HOH HOH . M 6 HOH A 14 214 150 HOH HOH . M 6 HOH A 15 215 102 HOH HOH . M 6 HOH A 16 216 59 HOH HOH . M 6 HOH A 17 217 147 HOH HOH . M 6 HOH A 18 218 48 HOH HOH . M 6 HOH A 19 219 194 HOH HOH . N 6 HOH B 1 301 79 HOH HOH . N 6 HOH B 2 302 156 HOH HOH . N 6 HOH B 3 303 131 HOH HOH . N 6 HOH B 4 304 155 HOH HOH . N 6 HOH B 5 305 11 HOH HOH . N 6 HOH B 6 306 181 HOH HOH . N 6 HOH B 7 307 105 HOH HOH . N 6 HOH B 8 308 44 HOH HOH . N 6 HOH B 9 309 22 HOH HOH . N 6 HOH B 10 310 88 HOH HOH . N 6 HOH B 11 311 10 HOH HOH . N 6 HOH B 12 312 14 HOH HOH . N 6 HOH B 13 313 15 HOH HOH . N 6 HOH B 14 314 30 HOH HOH . N 6 HOH B 15 315 179 HOH HOH . N 6 HOH B 16 316 116 HOH HOH . N 6 HOH B 17 317 31 HOH HOH . N 6 HOH B 18 318 83 HOH HOH . N 6 HOH B 19 319 120 HOH HOH . N 6 HOH B 20 320 97 HOH HOH . N 6 HOH B 21 321 164 HOH HOH . N 6 HOH B 22 322 135 HOH HOH . N 6 HOH B 23 323 42 HOH HOH . N 6 HOH B 24 324 125 HOH HOH . N 6 HOH B 25 325 168 HOH HOH . N 6 HOH B 26 326 112 HOH HOH . N 6 HOH B 27 327 145 HOH HOH . N 6 HOH B 28 328 182 HOH HOH . N 6 HOH B 29 329 186 HOH HOH . N 6 HOH B 30 330 96 HOH HOH . N 6 HOH B 31 331 146 HOH HOH . N 6 HOH B 32 332 139 HOH HOH . N 6 HOH B 33 333 173 HOH HOH . N 6 HOH B 34 334 132 HOH HOH . N 6 HOH B 35 335 68 HOH HOH . N 6 HOH B 36 336 165 HOH HOH . O 6 HOH C 1 101 163 HOH HOH . O 6 HOH C 2 102 89 HOH HOH . O 6 HOH C 3 103 162 HOH HOH . P 6 HOH D 1 301 19 HOH HOH . P 6 HOH D 2 302 177 HOH HOH . P 6 HOH D 3 303 93 HOH HOH . P 6 HOH D 4 304 63 HOH HOH . P 6 HOH D 5 305 5 HOH HOH . P 6 HOH D 6 306 37 HOH HOH . P 6 HOH D 7 307 17 HOH HOH . P 6 HOH D 8 308 8 HOH HOH . P 6 HOH D 9 309 54 HOH HOH . P 6 HOH D 10 310 121 HOH HOH . P 6 HOH D 11 311 7 HOH HOH . P 6 HOH D 12 312 152 HOH HOH . P 6 HOH D 13 313 169 HOH HOH . P 6 HOH D 14 314 6 HOH HOH . P 6 HOH D 15 315 77 HOH HOH . P 6 HOH D 16 316 87 HOH HOH . P 6 HOH D 17 317 2 HOH HOH . P 6 HOH D 18 318 109 HOH HOH . P 6 HOH D 19 319 36 HOH HOH . P 6 HOH D 20 320 170 HOH HOH . P 6 HOH D 21 321 12 HOH HOH . P 6 HOH D 22 322 20 HOH HOH . P 6 HOH D 23 323 160 HOH HOH . P 6 HOH D 24 324 27 HOH HOH . P 6 HOH D 25 325 32 HOH HOH . P 6 HOH D 26 326 38 HOH HOH . P 6 HOH D 27 327 113 HOH HOH . P 6 HOH D 28 328 144 HOH HOH . P 6 HOH D 29 329 161 HOH HOH . P 6 HOH D 30 330 18 HOH HOH . P 6 HOH D 31 331 69 HOH HOH . P 6 HOH D 32 332 85 HOH HOH . P 6 HOH D 33 333 81 HOH HOH . P 6 HOH D 34 334 39 HOH HOH . P 6 HOH D 35 335 127 HOH HOH . P 6 HOH D 36 336 29 HOH HOH . P 6 HOH D 37 337 136 HOH HOH . P 6 HOH D 38 338 196 HOH HOH . P 6 HOH D 39 339 28 HOH HOH . P 6 HOH D 40 340 4 HOH HOH . P 6 HOH D 41 341 74 HOH HOH . P 6 HOH D 42 342 190 HOH HOH . P 6 HOH D 43 343 16 HOH HOH . P 6 HOH D 44 344 73 HOH HOH . P 6 HOH D 45 345 72 HOH HOH . P 6 HOH D 46 346 9 HOH HOH . P 6 HOH D 47 347 114 HOH HOH . P 6 HOH D 48 348 143 HOH HOH . P 6 HOH D 49 349 61 HOH HOH . P 6 HOH D 50 350 76 HOH HOH . P 6 HOH D 51 351 65 HOH HOH . P 6 HOH D 52 352 172 HOH HOH . P 6 HOH D 53 353 90 HOH HOH . P 6 HOH D 54 354 91 HOH HOH . P 6 HOH D 55 355 122 HOH HOH . P 6 HOH D 56 356 56 HOH HOH . P 6 HOH D 57 357 108 HOH HOH . P 6 HOH D 58 358 49 HOH HOH . P 6 HOH D 59 359 35 HOH HOH . P 6 HOH D 60 360 180 HOH HOH . P 6 HOH D 61 361 115 HOH HOH . P 6 HOH D 62 362 111 HOH HOH . P 6 HOH D 63 363 137 HOH HOH . P 6 HOH D 64 364 104 HOH HOH . P 6 HOH D 65 365 46 HOH HOH . P 6 HOH D 66 366 33 HOH HOH . P 6 HOH D 67 367 34 HOH HOH . P 6 HOH D 68 368 66 HOH HOH . P 6 HOH D 69 369 71 HOH HOH . P 6 HOH D 70 370 153 HOH HOH . P 6 HOH D 71 371 118 HOH HOH . P 6 HOH D 72 372 119 HOH HOH . P 6 HOH D 73 373 171 HOH HOH . P 6 HOH D 74 374 129 HOH HOH . P 6 HOH D 75 375 101 HOH HOH . Q 6 HOH E 1 301 94 HOH HOH . Q 6 HOH E 2 302 60 HOH HOH . Q 6 HOH E 3 303 192 HOH HOH . Q 6 HOH E 4 304 133 HOH HOH . Q 6 HOH E 5 305 123 HOH HOH . Q 6 HOH E 6 306 128 HOH HOH . Q 6 HOH E 7 307 103 HOH HOH . Q 6 HOH E 8 308 159 HOH HOH . Q 6 HOH E 9 309 158 HOH HOH . Q 6 HOH E 10 310 62 HOH HOH . Q 6 HOH E 11 311 43 HOH HOH . Q 6 HOH E 12 312 25 HOH HOH . Q 6 HOH E 13 313 57 HOH HOH . Q 6 HOH E 14 314 1 HOH HOH . Q 6 HOH E 15 315 99 HOH HOH . Q 6 HOH E 16 316 84 HOH HOH . Q 6 HOH E 17 317 41 HOH HOH . Q 6 HOH E 18 318 80 HOH HOH . Q 6 HOH E 19 319 64 HOH HOH . Q 6 HOH E 20 320 13 HOH HOH . Q 6 HOH E 21 321 3 HOH HOH . Q 6 HOH E 22 322 52 HOH HOH . Q 6 HOH E 23 323 21 HOH HOH . Q 6 HOH E 24 324 82 HOH HOH . Q 6 HOH E 25 325 70 HOH HOH . Q 6 HOH E 26 326 24 HOH HOH . Q 6 HOH E 27 327 130 HOH HOH . Q 6 HOH E 28 328 53 HOH HOH . Q 6 HOH E 29 329 23 HOH HOH . Q 6 HOH E 30 330 51 HOH HOH . Q 6 HOH E 31 331 154 HOH HOH . Q 6 HOH E 32 332 58 HOH HOH . Q 6 HOH E 33 333 67 HOH HOH . Q 6 HOH E 34 334 142 HOH HOH . Q 6 HOH E 35 335 187 HOH HOH . Q 6 HOH E 36 336 134 HOH HOH . Q 6 HOH E 37 337 86 HOH HOH . Q 6 HOH E 38 338 95 HOH HOH . Q 6 HOH E 39 339 140 HOH HOH . Q 6 HOH E 40 340 184 HOH HOH . Q 6 HOH E 41 341 188 HOH HOH . Q 6 HOH E 42 342 124 HOH HOH . Q 6 HOH E 43 343 126 HOH HOH . Q 6 HOH E 44 344 47 HOH HOH . Q 6 HOH E 45 345 45 HOH HOH . Q 6 HOH E 46 346 40 HOH HOH . Q 6 HOH E 47 347 174 HOH HOH . Q 6 HOH E 48 348 106 HOH HOH . Q 6 HOH E 49 349 191 HOH HOH . Q 6 HOH E 50 350 189 HOH HOH . Q 6 HOH E 51 351 50 HOH HOH . Q 6 HOH E 52 352 92 HOH HOH . Q 6 HOH E 53 353 141 HOH HOH . Q 6 HOH E 54 354 117 HOH HOH . Q 6 HOH E 55 355 175 HOH HOH . Q 6 HOH E 56 356 138 HOH HOH . Q 6 HOH E 57 357 107 HOH HOH . R 6 HOH F 1 101 166 HOH HOH . R 6 HOH F 2 102 193 HOH HOH . R 6 HOH F 3 103 167 HOH HOH . R 6 HOH F 4 104 78 HOH HOH . R 6 HOH F 5 105 26 HOH HOH . R 6 HOH F 6 106 185 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SIN . . . H 5 -31.996 -8.459 -3.524 1 90.27 ? C1 SIN 202 B 1 HETATM 2 O O1 SIN . . . H 5 -32.781 -8.499 -4.504 1 90.91 ? O1 SIN 202 B 1 HETATM 3 O O2 SIN . . . H 5 -32.334 -8.933 -2.413 1 69.15 ? O2 SIN 202 B 1 HETATM 4 C C2 SIN . . . H 5 -30.613 -7.87 -3.695 1 93.84 ? C2 SIN 202 B 1 HETATM 5 C C3 SIN . . . H 5 -29.67 -9.056 -3.494 1 73.88 ? C3 SIN 202 B 1 HETATM 6 C C4 SIN . . . H 5 -28.189 -8.755 -3.502 1 85.3 ? C4 SIN 202 B 1 HETATM 7 O O3 SIN . . . H 5 -27.465 -9.191 -4.437 1 70.4 ? O3 SIN 202 B 1 HETATM 8 O O4 SIN . . . H 5 -27.713 -8.07 -2.564 1 77.89 ? O4 SIN 202 B 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 355 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #