data_8CMG
#
_model_server_result.job_id            PmKMZxS7pQ92UdTF4s5hxg 
_model_server_result.datetime_utc      '2024-11-23 20:14:08' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cmg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":201}' 
#
_entry.id    8CMG 
#
_exptl.entry_id    8CMG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8CMG 
_cell.length_a            61.25 
_cell.length_b            61.25 
_cell.length_c            418.59 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CMG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    'P 65 2 (x,y,z+1/12)' 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 N N N 
? 4 O N N 
? 4 P N N 
? 4 Q N N 
? 4 R N N 
? 4 S N N 
? 4 T N N 
? 4 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 108 A CYS 107 1_555 A SG CYS 164 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf2 B SG CYS 19 B CYS 15 1_555 B SG CYS 83 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
disulf ? disulf3 B SG CYS 121 B CYS 117 1_555 B SG CYS 177 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8CMG 
_atom_sites.fract_transf_matrix[1][1]    0.016327 
_atom_sites.fract_transf_matrix[1][2]    0.009426 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018852 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002389 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 EDO A 1 201 101 EDO EDO . 
E 4 EDO A 1 202 102 EDO EDO . 
F 4 EDO A 1 203 103 EDO EDO . 
G 4 EDO A 1 204 104 EDO EDO . 
H 4 EDO A 1 205 105 EDO EDO . 
I 4 EDO A 1 206 106 EDO EDO . 
J 4 EDO A 1 207 107 EDO EDO . 
K 4 EDO A 1 208 110 EDO EDO . 
L 5 SO4 A 1 209 203 SO4 SO4 . 
M 5 SO4 A 1 210 204 SO4 SO4 . 
N 4 EDO B 1 201 108 EDO EDO . 
O 4 EDO B 1 202 109 EDO EDO . 
P 4 EDO B 1 203 111 EDO EDO . 
Q 4 EDO B 1 204 112 EDO EDO . 
R 4 EDO B 1 205 113 EDO EDO . 
S 4 EDO B 1 206 115 EDO EDO . 
T 4 EDO B 1 207 116 EDO EDO . 
U 5 SO4 B 1 208 201 SO4 SO4 . 
V 5 SO4 B 1 209 202 SO4 SO4 . 
W 4 EDO C 1 101 114 EDO EDO . 
X 6 HOH A 1 301 69 HOH HOH . 
X 6 HOH A 2 302 191 HOH HOH . 
X 6 HOH A 3 303 180 HOH HOH . 
X 6 HOH A 4 304 194 HOH HOH . 
X 6 HOH A 5 305 63 HOH HOH . 
X 6 HOH A 6 306 205 HOH HOH . 
X 6 HOH A 7 307 222 HOH HOH . 
X 6 HOH A 8 308 159 HOH HOH . 
X 6 HOH A 9 309 103 HOH HOH . 
X 6 HOH A 10 310 224 HOH HOH . 
X 6 HOH A 11 311 9 HOH HOH . 
X 6 HOH A 12 312 228 HOH HOH . 
X 6 HOH A 13 313 34 HOH HOH . 
X 6 HOH A 14 314 80 HOH HOH . 
X 6 HOH A 15 315 87 HOH HOH . 
X 6 HOH A 16 316 30 HOH HOH . 
X 6 HOH A 17 317 64 HOH HOH . 
X 6 HOH A 18 318 3 HOH HOH . 
X 6 HOH A 19 319 142 HOH HOH . 
X 6 HOH A 20 320 18 HOH HOH . 
X 6 HOH A 21 321 47 HOH HOH . 
X 6 HOH A 22 322 162 HOH HOH . 
X 6 HOH A 23 323 184 HOH HOH . 
X 6 HOH A 24 324 73 HOH HOH . 
X 6 HOH A 25 325 213 HOH HOH . 
X 6 HOH A 26 326 170 HOH HOH . 
X 6 HOH A 27 327 75 HOH HOH . 
X 6 HOH A 28 328 4 HOH HOH . 
X 6 HOH A 29 329 56 HOH HOH . 
X 6 HOH A 30 330 70 HOH HOH . 
X 6 HOH A 31 331 150 HOH HOH . 
X 6 HOH A 32 332 109 HOH HOH . 
X 6 HOH A 33 333 10 HOH HOH . 
X 6 HOH A 34 334 176 HOH HOH . 
X 6 HOH A 35 335 54 HOH HOH . 
X 6 HOH A 36 336 88 HOH HOH . 
X 6 HOH A 37 337 24 HOH HOH . 
X 6 HOH A 38 338 94 HOH HOH . 
X 6 HOH A 39 339 137 HOH HOH . 
X 6 HOH A 40 340 85 HOH HOH . 
X 6 HOH A 41 341 206 HOH HOH . 
X 6 HOH A 42 342 55 HOH HOH . 
X 6 HOH A 43 343 207 HOH HOH . 
X 6 HOH A 44 344 151 HOH HOH . 
X 6 HOH A 45 345 211 HOH HOH . 
X 6 HOH A 46 346 43 HOH HOH . 
X 6 HOH A 47 347 33 HOH HOH . 
X 6 HOH A 48 348 195 HOH HOH . 
X 6 HOH A 49 349 169 HOH HOH . 
X 6 HOH A 50 350 139 HOH HOH . 
X 6 HOH A 51 351 201 HOH HOH . 
X 6 HOH A 52 352 41 HOH HOH . 
X 6 HOH A 53 353 51 HOH HOH . 
X 6 HOH A 54 354 202 HOH HOH . 
X 6 HOH A 55 355 11 HOH HOH . 
X 6 HOH A 56 356 152 HOH HOH . 
X 6 HOH A 57 357 132 HOH HOH . 
X 6 HOH A 58 358 123 HOH HOH . 
X 6 HOH A 59 359 50 HOH HOH . 
X 6 HOH A 60 360 161 HOH HOH . 
X 6 HOH A 61 361 23 HOH HOH . 
X 6 HOH A 62 362 173 HOH HOH . 
X 6 HOH A 63 363 158 HOH HOH . 
X 6 HOH A 64 364 144 HOH HOH . 
X 6 HOH A 65 365 44 HOH HOH . 
X 6 HOH A 66 366 107 HOH HOH . 
X 6 HOH A 67 367 133 HOH HOH . 
X 6 HOH A 68 368 38 HOH HOH . 
X 6 HOH A 69 369 92 HOH HOH . 
X 6 HOH A 70 370 193 HOH HOH . 
X 6 HOH A 71 371 149 HOH HOH . 
X 6 HOH A 72 372 118 HOH HOH . 
X 6 HOH A 73 373 59 HOH HOH . 
X 6 HOH A 74 374 42 HOH HOH . 
X 6 HOH A 75 375 62 HOH HOH . 
X 6 HOH A 76 376 200 HOH HOH . 
X 6 HOH A 77 377 167 HOH HOH . 
X 6 HOH A 78 378 185 HOH HOH . 
X 6 HOH A 79 379 29 HOH HOH . 
X 6 HOH A 80 380 153 HOH HOH . 
X 6 HOH A 81 381 105 HOH HOH . 
X 6 HOH A 82 382 5 HOH HOH . 
X 6 HOH A 83 383 35 HOH HOH . 
X 6 HOH A 84 384 81 HOH HOH . 
X 6 HOH A 85 385 131 HOH HOH . 
X 6 HOH A 86 386 95 HOH HOH . 
X 6 HOH A 87 387 117 HOH HOH . 
X 6 HOH A 88 388 72 HOH HOH . 
X 6 HOH A 89 389 111 HOH HOH . 
X 6 HOH A 90 390 46 HOH HOH . 
X 6 HOH A 91 391 84 HOH HOH . 
X 6 HOH A 92 392 141 HOH HOH . 
X 6 HOH A 93 393 110 HOH HOH . 
X 6 HOH A 94 394 36 HOH HOH . 
X 6 HOH A 95 395 78 HOH HOH . 
X 6 HOH A 96 396 114 HOH HOH . 
X 6 HOH A 97 397 106 HOH HOH . 
X 6 HOH A 98 398 199 HOH HOH . 
X 6 HOH A 99 399 166 HOH HOH . 
X 6 HOH A 100 400 219 HOH HOH . 
X 6 HOH A 101 401 214 HOH HOH . 
X 6 HOH A 102 402 116 HOH HOH . 
X 6 HOH A 103 403 177 HOH HOH . 
X 6 HOH A 104 404 68 HOH HOH . 
X 6 HOH A 105 405 209 HOH HOH . 
X 6 HOH A 106 406 113 HOH HOH . 
X 6 HOH A 107 407 163 HOH HOH . 
X 6 HOH A 108 408 190 HOH HOH . 
X 6 HOH A 109 409 181 HOH HOH . 
Y 6 HOH B 1 301 20 HOH HOH . 
Y 6 HOH B 2 302 196 HOH HOH . 
Y 6 HOH B 3 303 60 HOH HOH . 
Y 6 HOH B 4 304 120 HOH HOH . 
Y 6 HOH B 5 305 215 HOH HOH . 
Y 6 HOH B 6 306 182 HOH HOH . 
Y 6 HOH B 7 307 86 HOH HOH . 
Y 6 HOH B 8 308 178 HOH HOH . 
Y 6 HOH B 9 309 183 HOH HOH . 
Y 6 HOH B 10 310 164 HOH HOH . 
Y 6 HOH B 11 311 90 HOH HOH . 
Y 6 HOH B 12 312 198 HOH HOH . 
Y 6 HOH B 13 313 220 HOH HOH . 
Y 6 HOH B 14 314 104 HOH HOH . 
Y 6 HOH B 15 315 223 HOH HOH . 
Y 6 HOH B 16 316 26 HOH HOH . 
Y 6 HOH B 17 317 208 HOH HOH . 
Y 6 HOH B 18 318 19 HOH HOH . 
Y 6 HOH B 19 319 39 HOH HOH . 
Y 6 HOH B 20 320 32 HOH HOH . 
Y 6 HOH B 21 321 25 HOH HOH . 
Y 6 HOH B 22 322 28 HOH HOH . 
Y 6 HOH B 23 323 65 HOH HOH . 
Y 6 HOH B 24 324 154 HOH HOH . 
Y 6 HOH B 25 325 100 HOH HOH . 
Y 6 HOH B 26 326 1 HOH HOH . 
Y 6 HOH B 27 327 156 HOH HOH . 
Y 6 HOH B 28 328 48 HOH HOH . 
Y 6 HOH B 29 329 17 HOH HOH . 
Y 6 HOH B 30 330 57 HOH HOH . 
Y 6 HOH B 31 331 45 HOH HOH . 
Y 6 HOH B 32 332 37 HOH HOH . 
Y 6 HOH B 33 333 226 HOH HOH . 
Y 6 HOH B 34 334 7 HOH HOH . 
Y 6 HOH B 35 335 21 HOH HOH . 
Y 6 HOH B 36 336 58 HOH HOH . 
Y 6 HOH B 37 337 96 HOH HOH . 
Y 6 HOH B 38 338 143 HOH HOH . 
Y 6 HOH B 39 339 101 HOH HOH . 
Y 6 HOH B 40 340 140 HOH HOH . 
Y 6 HOH B 41 341 40 HOH HOH . 
Y 6 HOH B 42 342 145 HOH HOH . 
Y 6 HOH B 43 343 210 HOH HOH . 
Y 6 HOH B 44 344 212 HOH HOH . 
Y 6 HOH B 45 345 108 HOH HOH . 
Y 6 HOH B 46 346 61 HOH HOH . 
Y 6 HOH B 47 347 130 HOH HOH . 
Y 6 HOH B 48 348 217 HOH HOH . 
Y 6 HOH B 49 349 93 HOH HOH . 
Y 6 HOH B 50 350 6 HOH HOH . 
Y 6 HOH B 51 351 12 HOH HOH . 
Y 6 HOH B 52 352 168 HOH HOH . 
Y 6 HOH B 53 353 135 HOH HOH . 
Y 6 HOH B 54 354 157 HOH HOH . 
Y 6 HOH B 55 355 76 HOH HOH . 
Y 6 HOH B 56 356 2 HOH HOH . 
Y 6 HOH B 57 357 77 HOH HOH . 
Y 6 HOH B 58 358 134 HOH HOH . 
Y 6 HOH B 59 359 52 HOH HOH . 
Y 6 HOH B 60 360 74 HOH HOH . 
Y 6 HOH B 61 361 119 HOH HOH . 
Y 6 HOH B 62 362 175 HOH HOH . 
Y 6 HOH B 63 363 127 HOH HOH . 
Y 6 HOH B 64 364 124 HOH HOH . 
Y 6 HOH B 65 365 216 HOH HOH . 
Y 6 HOH B 66 366 82 HOH HOH . 
Y 6 HOH B 67 367 67 HOH HOH . 
Y 6 HOH B 68 368 66 HOH HOH . 
Y 6 HOH B 69 369 172 HOH HOH . 
Y 6 HOH B 70 370 16 HOH HOH . 
Y 6 HOH B 71 371 27 HOH HOH . 
Y 6 HOH B 72 372 91 HOH HOH . 
Y 6 HOH B 73 373 138 HOH HOH . 
Y 6 HOH B 74 374 49 HOH HOH . 
Y 6 HOH B 75 375 8 HOH HOH . 
Y 6 HOH B 76 376 179 HOH HOH . 
Y 6 HOH B 77 377 148 HOH HOH . 
Y 6 HOH B 78 378 186 HOH HOH . 
Y 6 HOH B 79 379 31 HOH HOH . 
Y 6 HOH B 80 380 112 HOH HOH . 
Y 6 HOH B 81 381 121 HOH HOH . 
Y 6 HOH B 82 382 225 HOH HOH . 
Y 6 HOH B 83 383 125 HOH HOH . 
Y 6 HOH B 84 384 122 HOH HOH . 
Y 6 HOH B 85 385 98 HOH HOH . 
Y 6 HOH B 86 386 165 HOH HOH . 
Y 6 HOH B 87 387 147 HOH HOH . 
Y 6 HOH B 88 388 221 HOH HOH . 
Y 6 HOH B 89 389 155 HOH HOH . 
Y 6 HOH B 90 390 99 HOH HOH . 
Y 6 HOH B 91 391 129 HOH HOH . 
Y 6 HOH B 92 392 197 HOH HOH . 
Y 6 HOH B 93 393 53 HOH HOH . 
Y 6 HOH B 94 394 189 HOH HOH . 
Y 6 HOH B 95 395 97 HOH HOH . 
Y 6 HOH B 96 396 115 HOH HOH . 
Y 6 HOH B 97 397 218 HOH HOH . 
Y 6 HOH B 98 398 188 HOH HOH . 
Y 6 HOH B 99 399 102 HOH HOH . 
Y 6 HOH B 100 400 160 HOH HOH . 
Y 6 HOH B 101 401 89 HOH HOH . 
Y 6 HOH B 102 402 71 HOH HOH . 
Y 6 HOH B 103 403 128 HOH HOH . 
Y 6 HOH B 104 404 126 HOH HOH . 
Z 6 HOH C 1 201 146 HOH HOH . 
Z 6 HOH C 2 202 79 HOH HOH . 
Z 6 HOH C 3 203 22 HOH HOH . 
Z 6 HOH C 4 204 227 HOH HOH . 
Z 6 HOH C 5 205 192 HOH HOH . 
Z 6 HOH C 6 206 136 HOH HOH . 
Z 6 HOH C 7 207 14 HOH HOH . 
Z 6 HOH C 8 208 187 HOH HOH . 
Z 6 HOH C 9 209 15 HOH HOH . 
Z 6 HOH C 10 210 13 HOH HOH . 
Z 6 HOH C 11 211 171 HOH HOH . 
Z 6 HOH C 12 212 204 HOH HOH . 
Z 6 HOH C 13 213 83 HOH HOH . 
Z 6 HOH C 14 214 174 HOH HOH . 
Z 6 HOH C 15 215 203 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 4 -25.236 18.137 -19.949 1 40.42 ? C1 EDO 201 A 1 
HETATM 2 O O1 EDO . . . D 4 -23.979 17.779 -19.319 0.71 35.36 ? O1 EDO 201 A 1 
HETATM 3 C C2 EDO . . . D 4 -25.257 17.963 -21.479 1 36.32 ? C2 EDO 201 A 1 
HETATM 4 O O2 EDO . . . D 4 -24.146 18.607 -22.128 0.8 35.32 ? O2 EDO 201 A 1 
#
_model_server_stats.io_time_ms              44 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           342 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           4 
#