data_8CMG # _model_server_result.job_id e8fr5uvLezMEG-4EMKRb6w _model_server_result.datetime_utc '2024-12-03 19:03:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cmg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":207}' # _entry.id 8CMG # _exptl.entry_id 8CMG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 16 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8CMG _cell.length_a 61.25 _cell.length_b 61.25 _cell.length_c 418.59 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CMG _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N ? 4 S N N ? 4 T N N ? 4 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 108 A CYS 107 1_555 A SG CYS 164 A CYS 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf2 B SG CYS 19 B CYS 15 1_555 B SG CYS 83 B CYS 79 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? disulf ? disulf3 B SG CYS 121 B CYS 117 1_555 B SG CYS 177 B CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8CMG _atom_sites.fract_transf_matrix[1][1] 0.016327 _atom_sites.fract_transf_matrix[1][2] 0.009426 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002389 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO A 1 201 101 EDO EDO . E 4 EDO A 1 202 102 EDO EDO . F 4 EDO A 1 203 103 EDO EDO . G 4 EDO A 1 204 104 EDO EDO . H 4 EDO A 1 205 105 EDO EDO . I 4 EDO A 1 206 106 EDO EDO . J 4 EDO A 1 207 107 EDO EDO . K 4 EDO A 1 208 110 EDO EDO . L 5 SO4 A 1 209 203 SO4 SO4 . M 5 SO4 A 1 210 204 SO4 SO4 . N 4 EDO B 1 201 108 EDO EDO . O 4 EDO B 1 202 109 EDO EDO . P 4 EDO B 1 203 111 EDO EDO . Q 4 EDO B 1 204 112 EDO EDO . R 4 EDO B 1 205 113 EDO EDO . S 4 EDO B 1 206 115 EDO EDO . T 4 EDO B 1 207 116 EDO EDO . U 5 SO4 B 1 208 201 SO4 SO4 . V 5 SO4 B 1 209 202 SO4 SO4 . W 4 EDO C 1 101 114 EDO EDO . X 6 HOH A 1 301 69 HOH HOH . X 6 HOH A 2 302 191 HOH HOH . X 6 HOH A 3 303 180 HOH HOH . X 6 HOH A 4 304 194 HOH HOH . X 6 HOH A 5 305 63 HOH HOH . X 6 HOH A 6 306 205 HOH HOH . X 6 HOH A 7 307 222 HOH HOH . X 6 HOH A 8 308 159 HOH HOH . X 6 HOH A 9 309 103 HOH HOH . X 6 HOH A 10 310 224 HOH HOH . X 6 HOH A 11 311 9 HOH HOH . X 6 HOH A 12 312 228 HOH HOH . X 6 HOH A 13 313 34 HOH HOH . X 6 HOH A 14 314 80 HOH HOH . X 6 HOH A 15 315 87 HOH HOH . X 6 HOH A 16 316 30 HOH HOH . X 6 HOH A 17 317 64 HOH HOH . X 6 HOH A 18 318 3 HOH HOH . X 6 HOH A 19 319 142 HOH HOH . X 6 HOH A 20 320 18 HOH HOH . X 6 HOH A 21 321 47 HOH HOH . X 6 HOH A 22 322 162 HOH HOH . X 6 HOH A 23 323 184 HOH HOH . X 6 HOH A 24 324 73 HOH HOH . X 6 HOH A 25 325 213 HOH HOH . X 6 HOH A 26 326 170 HOH HOH . X 6 HOH A 27 327 75 HOH HOH . X 6 HOH A 28 328 4 HOH HOH . X 6 HOH A 29 329 56 HOH HOH . X 6 HOH A 30 330 70 HOH HOH . X 6 HOH A 31 331 150 HOH HOH . X 6 HOH A 32 332 109 HOH HOH . X 6 HOH A 33 333 10 HOH HOH . X 6 HOH A 34 334 176 HOH HOH . X 6 HOH A 35 335 54 HOH HOH . X 6 HOH A 36 336 88 HOH HOH . X 6 HOH A 37 337 24 HOH HOH . X 6 HOH A 38 338 94 HOH HOH . X 6 HOH A 39 339 137 HOH HOH . X 6 HOH A 40 340 85 HOH HOH . X 6 HOH A 41 341 206 HOH HOH . X 6 HOH A 42 342 55 HOH HOH . X 6 HOH A 43 343 207 HOH HOH . X 6 HOH A 44 344 151 HOH HOH . X 6 HOH A 45 345 211 HOH HOH . X 6 HOH A 46 346 43 HOH HOH . X 6 HOH A 47 347 33 HOH HOH . X 6 HOH A 48 348 195 HOH HOH . X 6 HOH A 49 349 169 HOH HOH . X 6 HOH A 50 350 139 HOH HOH . X 6 HOH A 51 351 201 HOH HOH . X 6 HOH A 52 352 41 HOH HOH . X 6 HOH A 53 353 51 HOH HOH . X 6 HOH A 54 354 202 HOH HOH . X 6 HOH A 55 355 11 HOH HOH . X 6 HOH A 56 356 152 HOH HOH . X 6 HOH A 57 357 132 HOH HOH . X 6 HOH A 58 358 123 HOH HOH . X 6 HOH A 59 359 50 HOH HOH . X 6 HOH A 60 360 161 HOH HOH . X 6 HOH A 61 361 23 HOH HOH . X 6 HOH A 62 362 173 HOH HOH . X 6 HOH A 63 363 158 HOH HOH . X 6 HOH A 64 364 144 HOH HOH . X 6 HOH A 65 365 44 HOH HOH . X 6 HOH A 66 366 107 HOH HOH . X 6 HOH A 67 367 133 HOH HOH . X 6 HOH A 68 368 38 HOH HOH . X 6 HOH A 69 369 92 HOH HOH . X 6 HOH A 70 370 193 HOH HOH . X 6 HOH A 71 371 149 HOH HOH . X 6 HOH A 72 372 118 HOH HOH . X 6 HOH A 73 373 59 HOH HOH . X 6 HOH A 74 374 42 HOH HOH . X 6 HOH A 75 375 62 HOH HOH . X 6 HOH A 76 376 200 HOH HOH . X 6 HOH A 77 377 167 HOH HOH . X 6 HOH A 78 378 185 HOH HOH . X 6 HOH A 79 379 29 HOH HOH . X 6 HOH A 80 380 153 HOH HOH . X 6 HOH A 81 381 105 HOH HOH . X 6 HOH A 82 382 5 HOH HOH . X 6 HOH A 83 383 35 HOH HOH . X 6 HOH A 84 384 81 HOH HOH . X 6 HOH A 85 385 131 HOH HOH . X 6 HOH A 86 386 95 HOH HOH . X 6 HOH A 87 387 117 HOH HOH . X 6 HOH A 88 388 72 HOH HOH . X 6 HOH A 89 389 111 HOH HOH . X 6 HOH A 90 390 46 HOH HOH . X 6 HOH A 91 391 84 HOH HOH . X 6 HOH A 92 392 141 HOH HOH . X 6 HOH A 93 393 110 HOH HOH . X 6 HOH A 94 394 36 HOH HOH . X 6 HOH A 95 395 78 HOH HOH . X 6 HOH A 96 396 114 HOH HOH . X 6 HOH A 97 397 106 HOH HOH . X 6 HOH A 98 398 199 HOH HOH . X 6 HOH A 99 399 166 HOH HOH . X 6 HOH A 100 400 219 HOH HOH . X 6 HOH A 101 401 214 HOH HOH . X 6 HOH A 102 402 116 HOH HOH . X 6 HOH A 103 403 177 HOH HOH . X 6 HOH A 104 404 68 HOH HOH . X 6 HOH A 105 405 209 HOH HOH . X 6 HOH A 106 406 113 HOH HOH . X 6 HOH A 107 407 163 HOH HOH . X 6 HOH A 108 408 190 HOH HOH . X 6 HOH A 109 409 181 HOH HOH . Y 6 HOH B 1 301 20 HOH HOH . Y 6 HOH B 2 302 196 HOH HOH . Y 6 HOH B 3 303 60 HOH HOH . Y 6 HOH B 4 304 120 HOH HOH . Y 6 HOH B 5 305 215 HOH HOH . Y 6 HOH B 6 306 182 HOH HOH . Y 6 HOH B 7 307 86 HOH HOH . Y 6 HOH B 8 308 178 HOH HOH . Y 6 HOH B 9 309 183 HOH HOH . Y 6 HOH B 10 310 164 HOH HOH . Y 6 HOH B 11 311 90 HOH HOH . Y 6 HOH B 12 312 198 HOH HOH . Y 6 HOH B 13 313 220 HOH HOH . Y 6 HOH B 14 314 104 HOH HOH . Y 6 HOH B 15 315 223 HOH HOH . Y 6 HOH B 16 316 26 HOH HOH . Y 6 HOH B 17 317 208 HOH HOH . Y 6 HOH B 18 318 19 HOH HOH . Y 6 HOH B 19 319 39 HOH HOH . Y 6 HOH B 20 320 32 HOH HOH . Y 6 HOH B 21 321 25 HOH HOH . Y 6 HOH B 22 322 28 HOH HOH . Y 6 HOH B 23 323 65 HOH HOH . Y 6 HOH B 24 324 154 HOH HOH . Y 6 HOH B 25 325 100 HOH HOH . Y 6 HOH B 26 326 1 HOH HOH . Y 6 HOH B 27 327 156 HOH HOH . Y 6 HOH B 28 328 48 HOH HOH . Y 6 HOH B 29 329 17 HOH HOH . Y 6 HOH B 30 330 57 HOH HOH . Y 6 HOH B 31 331 45 HOH HOH . Y 6 HOH B 32 332 37 HOH HOH . Y 6 HOH B 33 333 226 HOH HOH . Y 6 HOH B 34 334 7 HOH HOH . Y 6 HOH B 35 335 21 HOH HOH . Y 6 HOH B 36 336 58 HOH HOH . Y 6 HOH B 37 337 96 HOH HOH . Y 6 HOH B 38 338 143 HOH HOH . Y 6 HOH B 39 339 101 HOH HOH . Y 6 HOH B 40 340 140 HOH HOH . Y 6 HOH B 41 341 40 HOH HOH . Y 6 HOH B 42 342 145 HOH HOH . Y 6 HOH B 43 343 210 HOH HOH . Y 6 HOH B 44 344 212 HOH HOH . Y 6 HOH B 45 345 108 HOH HOH . Y 6 HOH B 46 346 61 HOH HOH . Y 6 HOH B 47 347 130 HOH HOH . Y 6 HOH B 48 348 217 HOH HOH . Y 6 HOH B 49 349 93 HOH HOH . Y 6 HOH B 50 350 6 HOH HOH . Y 6 HOH B 51 351 12 HOH HOH . Y 6 HOH B 52 352 168 HOH HOH . Y 6 HOH B 53 353 135 HOH HOH . Y 6 HOH B 54 354 157 HOH HOH . Y 6 HOH B 55 355 76 HOH HOH . Y 6 HOH B 56 356 2 HOH HOH . Y 6 HOH B 57 357 77 HOH HOH . Y 6 HOH B 58 358 134 HOH HOH . Y 6 HOH B 59 359 52 HOH HOH . Y 6 HOH B 60 360 74 HOH HOH . Y 6 HOH B 61 361 119 HOH HOH . Y 6 HOH B 62 362 175 HOH HOH . Y 6 HOH B 63 363 127 HOH HOH . Y 6 HOH B 64 364 124 HOH HOH . Y 6 HOH B 65 365 216 HOH HOH . Y 6 HOH B 66 366 82 HOH HOH . Y 6 HOH B 67 367 67 HOH HOH . Y 6 HOH B 68 368 66 HOH HOH . Y 6 HOH B 69 369 172 HOH HOH . Y 6 HOH B 70 370 16 HOH HOH . Y 6 HOH B 71 371 27 HOH HOH . Y 6 HOH B 72 372 91 HOH HOH . Y 6 HOH B 73 373 138 HOH HOH . Y 6 HOH B 74 374 49 HOH HOH . Y 6 HOH B 75 375 8 HOH HOH . Y 6 HOH B 76 376 179 HOH HOH . Y 6 HOH B 77 377 148 HOH HOH . Y 6 HOH B 78 378 186 HOH HOH . Y 6 HOH B 79 379 31 HOH HOH . Y 6 HOH B 80 380 112 HOH HOH . Y 6 HOH B 81 381 121 HOH HOH . Y 6 HOH B 82 382 225 HOH HOH . Y 6 HOH B 83 383 125 HOH HOH . Y 6 HOH B 84 384 122 HOH HOH . Y 6 HOH B 85 385 98 HOH HOH . Y 6 HOH B 86 386 165 HOH HOH . Y 6 HOH B 87 387 147 HOH HOH . Y 6 HOH B 88 388 221 HOH HOH . Y 6 HOH B 89 389 155 HOH HOH . Y 6 HOH B 90 390 99 HOH HOH . Y 6 HOH B 91 391 129 HOH HOH . Y 6 HOH B 92 392 197 HOH HOH . Y 6 HOH B 93 393 53 HOH HOH . Y 6 HOH B 94 394 189 HOH HOH . Y 6 HOH B 95 395 97 HOH HOH . Y 6 HOH B 96 396 115 HOH HOH . Y 6 HOH B 97 397 218 HOH HOH . Y 6 HOH B 98 398 188 HOH HOH . Y 6 HOH B 99 399 102 HOH HOH . Y 6 HOH B 100 400 160 HOH HOH . Y 6 HOH B 101 401 89 HOH HOH . Y 6 HOH B 102 402 71 HOH HOH . Y 6 HOH B 103 403 128 HOH HOH . Y 6 HOH B 104 404 126 HOH HOH . Z 6 HOH C 1 201 146 HOH HOH . Z 6 HOH C 2 202 79 HOH HOH . Z 6 HOH C 3 203 22 HOH HOH . Z 6 HOH C 4 204 227 HOH HOH . Z 6 HOH C 5 205 192 HOH HOH . Z 6 HOH C 6 206 136 HOH HOH . Z 6 HOH C 7 207 14 HOH HOH . Z 6 HOH C 8 208 187 HOH HOH . Z 6 HOH C 9 209 15 HOH HOH . Z 6 HOH C 10 210 13 HOH HOH . Z 6 HOH C 11 211 171 HOH HOH . Z 6 HOH C 12 212 204 HOH HOH . Z 6 HOH C 13 213 83 HOH HOH . Z 6 HOH C 14 214 174 HOH HOH . Z 6 HOH C 15 215 203 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 4 -43.514 -11.782 -25.282 1 56.69 ? C1 EDO 207 A 1 HETATM 2 O O1 EDO . . . J 4 -43.245 -13.141 -25.675 0.62 51.79 ? O1 EDO 207 A 1 HETATM 3 C C2 EDO . . . J 4 -42.241 -10.931 -25.295 0.89 58.03 ? C2 EDO 207 A 1 HETATM 4 O O2 EDO . . . J 4 -41.484 -10.981 -26.531 0.83 45.73 ? O2 EDO 207 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #