data_8CMS # _model_server_result.job_id SPDxAYiz7X1y_u8xSEn2rw _model_server_result.datetime_utc '2024-12-26 23:18:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cms # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8CMS # _exptl.entry_id 8CMS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 232.278 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(1~{S},2~{S})-~{N}'-ethanoyl-2-(3-methylphenyl)cyclopropane-1-carbohydrazide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.05 _cell.angle_gamma 90 _cell.entry_id 8CMS _cell.length_a 47.65 _cell.length_b 45.25 _cell.length_c 58 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CMS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 53 _struct_conn.ptnr1_auth_asym_id AAA _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 51 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C11 _struct_conn.ptnr2_label_comp_id V2X _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id AAA _struct_conn.ptnr2_auth_comp_id V2X _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.648 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C13 H16 N2 O2' _chem_comp.formula_weight 232.278 _chem_comp.id V2X _chem_comp.mon_nstd_flag . _chem_comp.name "(1~{S},2~{S})-~{N}'-ethanoyl-2-(3-methylphenyl)cyclopropane-1-carbohydrazide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 V2X sing 330 n n C1 C2 V2X doub 331 n y C1 C12 V2X sing 332 n y C2 C3 V2X sing 333 n y C12 C5 V2X doub 334 n y C3 C4 V2X doub 335 n y C5 C4 V2X sing 336 n y C5 C6 V2X sing 337 n n C6 C7 V2X sing 338 n n C6 C8 V2X sing 339 n n C7 C8 V2X sing 340 n n C8 C9 V2X sing 341 n n O C9 V2X doub 342 n n C9 N V2X sing 343 n n N N1 V2X sing 344 n n N1 C10 V2X sing 345 n n O1 C10 V2X doub 346 n n C10 C11 V2X sing 347 n n C11 H1 V2X sing 348 n n C11 H2 V2X sing 349 n n C11 H3 V2X sing 350 n n C12 H4 V2X sing 351 n n C2 H5 V2X sing 352 n n C3 H6 V2X sing 353 n n C4 H7 V2X sing 354 n n C6 H8 V2X sing 355 n n C7 H9 V2X sing 356 n n C7 H10 V2X sing 357 n n N1 H11 V2X sing 358 n n N H12 V2X sing 359 n n C8 H13 V2X sing 360 n n C H14 V2X sing 361 n n C H15 V2X sing 362 n n C H16 V2X sing 363 n n # _atom_sites.entry_id 8CMS _atom_sites.fract_transf_matrix[1][1] 0.020986 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002224 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022099 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017338 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 V2X AAA 1 301 301 V2X V45 . C 3 HOH AAA 1 401 27 HOH HOH . C 3 HOH AAA 2 402 132 HOH HOH . C 3 HOH AAA 3 403 58 HOH HOH . C 3 HOH AAA 4 404 61 HOH HOH . C 3 HOH AAA 5 405 32 HOH HOH . C 3 HOH AAA 6 406 63 HOH HOH . C 3 HOH AAA 7 407 15 HOH HOH . C 3 HOH AAA 8 408 31 HOH HOH . C 3 HOH AAA 9 409 91 HOH HOH . C 3 HOH AAA 10 410 73 HOH HOH . C 3 HOH AAA 11 411 12 HOH HOH . C 3 HOH AAA 12 412 36 HOH HOH . C 3 HOH AAA 13 413 50 HOH HOH . C 3 HOH AAA 14 414 72 HOH HOH . C 3 HOH AAA 15 415 118 HOH HOH . C 3 HOH AAA 16 416 45 HOH HOH . C 3 HOH AAA 17 417 56 HOH HOH . C 3 HOH AAA 18 418 5 HOH HOH . C 3 HOH AAA 19 419 17 HOH HOH . C 3 HOH AAA 20 420 3 HOH HOH . C 3 HOH AAA 21 421 42 HOH HOH . C 3 HOH AAA 22 422 14 HOH HOH . C 3 HOH AAA 23 423 85 HOH HOH . C 3 HOH AAA 24 424 89 HOH HOH . C 3 HOH AAA 25 425 116 HOH HOH . C 3 HOH AAA 26 426 29 HOH HOH . C 3 HOH AAA 27 427 37 HOH HOH . C 3 HOH AAA 28 428 30 HOH HOH . C 3 HOH AAA 29 429 9 HOH HOH . C 3 HOH AAA 30 430 21 HOH HOH . C 3 HOH AAA 31 431 67 HOH HOH . C 3 HOH AAA 32 432 34 HOH HOH . C 3 HOH AAA 33 433 23 HOH HOH . C 3 HOH AAA 34 434 20 HOH HOH . C 3 HOH AAA 35 435 2 HOH HOH . C 3 HOH AAA 36 436 10 HOH HOH . C 3 HOH AAA 37 437 62 HOH HOH . C 3 HOH AAA 38 438 54 HOH HOH . C 3 HOH AAA 39 439 68 HOH HOH . C 3 HOH AAA 40 440 11 HOH HOH . C 3 HOH AAA 41 441 7 HOH HOH . C 3 HOH AAA 42 442 6 HOH HOH . C 3 HOH AAA 43 443 8 HOH HOH . C 3 HOH AAA 44 444 78 HOH HOH . C 3 HOH AAA 45 445 44 HOH HOH . C 3 HOH AAA 46 446 121 HOH HOH . C 3 HOH AAA 47 447 80 HOH HOH . C 3 HOH AAA 48 448 39 HOH HOH . C 3 HOH AAA 49 449 24 HOH HOH . C 3 HOH AAA 50 450 28 HOH HOH . C 3 HOH AAA 51 451 22 HOH HOH . C 3 HOH AAA 52 452 84 HOH HOH . C 3 HOH AAA 53 453 4 HOH HOH . C 3 HOH AAA 54 454 41 HOH HOH . C 3 HOH AAA 55 455 87 HOH HOH . C 3 HOH AAA 56 456 131 HOH HOH . C 3 HOH AAA 57 457 43 HOH HOH . C 3 HOH AAA 58 458 25 HOH HOH . C 3 HOH AAA 59 459 47 HOH HOH . C 3 HOH AAA 60 460 76 HOH HOH . C 3 HOH AAA 61 461 100 HOH HOH . C 3 HOH AAA 62 462 35 HOH HOH . C 3 HOH AAA 63 463 79 HOH HOH . C 3 HOH AAA 64 464 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 V2X . . . B 2 1.023 -5.304 6.721 1 30.16 ? C10 V2X 301 AAA 1 HETATM 2 C C11 V2X . . . B 2 1.27 -4.605 8.044 1 28.85 ? C11 V2X 301 AAA 1 HETATM 3 C C12 V2X . . . B 2 -1.626 -5.688 -1.011 1 50.87 ? C12 V2X 301 AAA 1 HETATM 4 C C1 V2X . . . B 2 -2.165 -6.591 -1.913 1 50.67 ? C1 V2X 301 AAA 1 HETATM 5 C C2 V2X . . . B 2 -1.753 -7.917 -1.847 1 51.84 ? C2 V2X 301 AAA 1 HETATM 6 C C3 V2X . . . B 2 -0.846 -8.334 -0.888 1 50.67 ? C3 V2X 301 AAA 1 HETATM 7 C C4 V2X . . . B 2 -0.326 -7.418 0.009 1 56.18 ? C4 V2X 301 AAA 1 HETATM 8 C C5 V2X . . . B 2 -0.702 -6.082 -0.054 1 53.48 ? C5 V2X 301 AAA 1 HETATM 9 C C6 V2X . . . B 2 -0.185 -5.062 0.931 1 54.31 ? C6 V2X 301 AAA 1 HETATM 10 C C7 V2X . . . B 2 -1.16 -4.24 1.7 1 58.35 ? C7 V2X 301 AAA 1 HETATM 11 O O1 V2X . . . B 2 1.316 -6.468 6.47 1 28.39 ? O1 V2X 301 AAA 1 HETATM 12 N N1 V2X . . . B 2 0.527 -4.489 5.8 1 35.42 ? N1 V2X 301 AAA 1 HETATM 13 N N V2X . . . B 2 0.015 -5.041 4.657 1 37.22 ? N V2X 301 AAA 1 HETATM 14 C C9 V2X . . . B 2 0.541 -4.743 3.472 1 48.64 ? C9 V2X 301 AAA 1 HETATM 15 O O V2X . . . B 2 1.532 -4.023 3.244 1 43.97 ? O V2X 301 AAA 1 HETATM 16 C C8 V2X . . . B 2 -0.391 -5.311 2.421 1 54.29 ? C8 V2X 301 AAA 1 HETATM 17 C C V2X . . . B 2 -3.169 -6.142 -2.942 1 51.54 ? C V2X 301 AAA 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 366 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 17 #