data_8CMV # _model_server_result.job_id 5z6CqNbMSK15G4Zuu2XDNQ _model_server_result.datetime_utc '2024-12-22 01:34:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cmv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 8CMV # _exptl.entry_id 8CMV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8CMV _cell.length_a 108.876 _cell.length_b 108.876 _cell.length_c 35.402 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CMV _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 238 A CYS 238 1_555 A SG CYS 283 A CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 275 A CYS 275 1_555 A SG CYS 292 A CYS 292 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8CMV _atom_sites.fract_transf_matrix[1][1] 0.009185 _atom_sites.fract_transf_matrix[1][2] 0.005303 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010606 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028247 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IPA A 1 401 301 IPA IPA . C 3 GOL A 1 402 1 GOL GOL . D 3 GOL A 1 403 2 GOL GOL . E 3 GOL A 1 404 3 GOL GOL . F 3 GOL A 1 405 4 GOL GOL . G 4 HOH A 1 501 225 HOH HOH . G 4 HOH A 2 502 270 HOH HOH . G 4 HOH A 3 503 67 HOH HOH . G 4 HOH A 4 504 156 HOH HOH . G 4 HOH A 5 505 102 HOH HOH . G 4 HOH A 6 506 108 HOH HOH . G 4 HOH A 7 507 49 HOH HOH . G 4 HOH A 8 508 268 HOH HOH . G 4 HOH A 9 509 95 HOH HOH . G 4 HOH A 10 510 191 HOH HOH . G 4 HOH A 11 511 173 HOH HOH . G 4 HOH A 12 512 123 HOH HOH . G 4 HOH A 13 513 66 HOH HOH . G 4 HOH A 14 514 144 HOH HOH . G 4 HOH A 15 515 97 HOH HOH . G 4 HOH A 16 516 10 HOH HOH . G 4 HOH A 17 517 136 HOH HOH . G 4 HOH A 18 518 179 HOH HOH . G 4 HOH A 19 519 217 HOH HOH . G 4 HOH A 20 520 168 HOH HOH . G 4 HOH A 21 521 29 HOH HOH . G 4 HOH A 22 522 114 HOH HOH . G 4 HOH A 23 523 240 HOH HOH . G 4 HOH A 24 524 265 HOH HOH . G 4 HOH A 25 525 7 HOH HOH . G 4 HOH A 26 526 53 HOH HOH . G 4 HOH A 27 527 198 HOH HOH . G 4 HOH A 28 528 1 HOH HOH . G 4 HOH A 29 529 105 HOH HOH . G 4 HOH A 30 530 8 HOH HOH . G 4 HOH A 31 531 131 HOH HOH . G 4 HOH A 32 532 88 HOH HOH . G 4 HOH A 33 533 273 HOH HOH . G 4 HOH A 34 534 195 HOH HOH . G 4 HOH A 35 535 148 HOH HOH . G 4 HOH A 36 536 21 HOH HOH . G 4 HOH A 37 537 227 HOH HOH . G 4 HOH A 38 538 28 HOH HOH . G 4 HOH A 39 539 57 HOH HOH . G 4 HOH A 40 540 4 HOH HOH . G 4 HOH A 41 541 82 HOH HOH . G 4 HOH A 42 542 42 HOH HOH . G 4 HOH A 43 543 54 HOH HOH . G 4 HOH A 44 544 171 HOH HOH . G 4 HOH A 45 545 61 HOH HOH . G 4 HOH A 46 546 17 HOH HOH . G 4 HOH A 47 547 137 HOH HOH . G 4 HOH A 48 548 98 HOH HOH . G 4 HOH A 49 549 253 HOH HOH . G 4 HOH A 50 550 13 HOH HOH . G 4 HOH A 51 551 58 HOH HOH . G 4 HOH A 52 552 59 HOH HOH . G 4 HOH A 53 553 187 HOH HOH . G 4 HOH A 54 554 150 HOH HOH . G 4 HOH A 55 555 186 HOH HOH . G 4 HOH A 56 556 138 HOH HOH . G 4 HOH A 57 557 60 HOH HOH . G 4 HOH A 58 558 87 HOH HOH . G 4 HOH A 59 559 158 HOH HOH . G 4 HOH A 60 560 9 HOH HOH . G 4 HOH A 61 561 2 HOH HOH . G 4 HOH A 62 562 121 HOH HOH . G 4 HOH A 63 563 70 HOH HOH . G 4 HOH A 64 564 264 HOH HOH . G 4 HOH A 65 565 33 HOH HOH . G 4 HOH A 66 566 183 HOH HOH . G 4 HOH A 67 567 149 HOH HOH . G 4 HOH A 68 568 79 HOH HOH . G 4 HOH A 69 569 51 HOH HOH . G 4 HOH A 70 570 117 HOH HOH . G 4 HOH A 71 571 188 HOH HOH . G 4 HOH A 72 572 157 HOH HOH . G 4 HOH A 73 573 32 HOH HOH . G 4 HOH A 74 574 269 HOH HOH . G 4 HOH A 75 575 25 HOH HOH . G 4 HOH A 76 576 24 HOH HOH . G 4 HOH A 77 577 39 HOH HOH . G 4 HOH A 78 578 241 HOH HOH . G 4 HOH A 79 579 101 HOH HOH . G 4 HOH A 80 580 80 HOH HOH . G 4 HOH A 81 581 16 HOH HOH . G 4 HOH A 82 582 52 HOH HOH . G 4 HOH A 83 583 5 HOH HOH . G 4 HOH A 84 584 147 HOH HOH . G 4 HOH A 85 585 77 HOH HOH . G 4 HOH A 86 586 239 HOH HOH . G 4 HOH A 87 587 55 HOH HOH . G 4 HOH A 88 588 41 HOH HOH . G 4 HOH A 89 589 164 HOH HOH . G 4 HOH A 90 590 45 HOH HOH . G 4 HOH A 91 591 20 HOH HOH . G 4 HOH A 92 592 31 HOH HOH . G 4 HOH A 93 593 142 HOH HOH . G 4 HOH A 94 594 65 HOH HOH . G 4 HOH A 95 595 56 HOH HOH . G 4 HOH A 96 596 6 HOH HOH . G 4 HOH A 97 597 75 HOH HOH . G 4 HOH A 98 598 64 HOH HOH . G 4 HOH A 99 599 111 HOH HOH . G 4 HOH A 100 600 36 HOH HOH . G 4 HOH A 101 601 12 HOH HOH . G 4 HOH A 102 602 11 HOH HOH . G 4 HOH A 103 603 267 HOH HOH . G 4 HOH A 104 604 159 HOH HOH . G 4 HOH A 105 605 190 HOH HOH . G 4 HOH A 106 606 196 HOH HOH . G 4 HOH A 107 607 244 HOH HOH . G 4 HOH A 108 608 73 HOH HOH . G 4 HOH A 109 609 207 HOH HOH . G 4 HOH A 110 610 126 HOH HOH . G 4 HOH A 111 611 44 HOH HOH . G 4 HOH A 112 612 62 HOH HOH . G 4 HOH A 113 613 146 HOH HOH . G 4 HOH A 114 614 104 HOH HOH . G 4 HOH A 115 615 129 HOH HOH . G 4 HOH A 116 616 263 HOH HOH . G 4 HOH A 117 617 92 HOH HOH . G 4 HOH A 118 618 261 HOH HOH . G 4 HOH A 119 619 106 HOH HOH . G 4 HOH A 120 620 30 HOH HOH . G 4 HOH A 121 621 63 HOH HOH . G 4 HOH A 122 622 211 HOH HOH . G 4 HOH A 123 623 69 HOH HOH . G 4 HOH A 124 624 94 HOH HOH . G 4 HOH A 125 625 48 HOH HOH . G 4 HOH A 126 626 212 HOH HOH . G 4 HOH A 127 627 204 HOH HOH . G 4 HOH A 128 628 189 HOH HOH . G 4 HOH A 129 629 18 HOH HOH . G 4 HOH A 130 630 257 HOH HOH . G 4 HOH A 131 631 172 HOH HOH . G 4 HOH A 132 632 134 HOH HOH . G 4 HOH A 133 633 151 HOH HOH . G 4 HOH A 134 634 124 HOH HOH . G 4 HOH A 135 635 161 HOH HOH . G 4 HOH A 136 636 96 HOH HOH . G 4 HOH A 137 637 143 HOH HOH . G 4 HOH A 138 638 224 HOH HOH . G 4 HOH A 139 639 76 HOH HOH . G 4 HOH A 140 640 86 HOH HOH . G 4 HOH A 141 641 182 HOH HOH . G 4 HOH A 142 642 122 HOH HOH . G 4 HOH A 143 643 19 HOH HOH . G 4 HOH A 144 644 222 HOH HOH . G 4 HOH A 145 645 115 HOH HOH . G 4 HOH A 146 646 74 HOH HOH . G 4 HOH A 147 647 167 HOH HOH . G 4 HOH A 148 648 83 HOH HOH . G 4 HOH A 149 649 27 HOH HOH . G 4 HOH A 150 650 178 HOH HOH . G 4 HOH A 151 651 37 HOH HOH . G 4 HOH A 152 652 180 HOH HOH . G 4 HOH A 153 653 163 HOH HOH . G 4 HOH A 154 654 112 HOH HOH . G 4 HOH A 155 655 43 HOH HOH . G 4 HOH A 156 656 46 HOH HOH . G 4 HOH A 157 657 166 HOH HOH . G 4 HOH A 158 658 26 HOH HOH . G 4 HOH A 159 659 84 HOH HOH . G 4 HOH A 160 660 85 HOH HOH . G 4 HOH A 161 661 155 HOH HOH . G 4 HOH A 162 662 242 HOH HOH . G 4 HOH A 163 663 113 HOH HOH . G 4 HOH A 164 664 34 HOH HOH . G 4 HOH A 165 665 153 HOH HOH . G 4 HOH A 166 666 209 HOH HOH . G 4 HOH A 167 667 47 HOH HOH . G 4 HOH A 168 668 78 HOH HOH . G 4 HOH A 169 669 107 HOH HOH . G 4 HOH A 170 670 205 HOH HOH . G 4 HOH A 171 671 68 HOH HOH . G 4 HOH A 172 672 103 HOH HOH . G 4 HOH A 173 673 192 HOH HOH . G 4 HOH A 174 674 140 HOH HOH . G 4 HOH A 175 675 214 HOH HOH . G 4 HOH A 176 676 127 HOH HOH . G 4 HOH A 177 677 120 HOH HOH . G 4 HOH A 178 678 72 HOH HOH . G 4 HOH A 179 679 71 HOH HOH . G 4 HOH A 180 680 162 HOH HOH . G 4 HOH A 181 681 160 HOH HOH . G 4 HOH A 182 682 133 HOH HOH . G 4 HOH A 183 683 177 HOH HOH . G 4 HOH A 184 684 228 HOH HOH . G 4 HOH A 185 685 22 HOH HOH . G 4 HOH A 186 686 213 HOH HOH . G 4 HOH A 187 687 139 HOH HOH . G 4 HOH A 188 688 109 HOH HOH . G 4 HOH A 189 689 50 HOH HOH . G 4 HOH A 190 690 3 HOH HOH . G 4 HOH A 191 691 81 HOH HOH . G 4 HOH A 192 692 90 HOH HOH . G 4 HOH A 193 693 23 HOH HOH . G 4 HOH A 194 694 218 HOH HOH . G 4 HOH A 195 695 132 HOH HOH . G 4 HOH A 196 696 200 HOH HOH . G 4 HOH A 197 697 170 HOH HOH . G 4 HOH A 198 698 197 HOH HOH . G 4 HOH A 199 699 206 HOH HOH . G 4 HOH A 200 700 15 HOH HOH . G 4 HOH A 201 701 237 HOH HOH . G 4 HOH A 202 702 174 HOH HOH . G 4 HOH A 203 703 125 HOH HOH . G 4 HOH A 204 704 99 HOH HOH . G 4 HOH A 205 705 210 HOH HOH . G 4 HOH A 206 706 248 HOH HOH . G 4 HOH A 207 707 258 HOH HOH . G 4 HOH A 208 708 185 HOH HOH . G 4 HOH A 209 709 238 HOH HOH . G 4 HOH A 210 710 272 HOH HOH . G 4 HOH A 211 711 193 HOH HOH . G 4 HOH A 212 712 203 HOH HOH . G 4 HOH A 213 713 208 HOH HOH . G 4 HOH A 214 714 230 HOH HOH . G 4 HOH A 215 715 184 HOH HOH . G 4 HOH A 216 716 14 HOH HOH . G 4 HOH A 217 717 219 HOH HOH . G 4 HOH A 218 718 169 HOH HOH . G 4 HOH A 219 719 236 HOH HOH . G 4 HOH A 220 720 119 HOH HOH . G 4 HOH A 221 721 175 HOH HOH . G 4 HOH A 222 722 247 HOH HOH . G 4 HOH A 223 723 254 HOH HOH . G 4 HOH A 224 724 260 HOH HOH . G 4 HOH A 225 725 181 HOH HOH . G 4 HOH A 226 726 145 HOH HOH . G 4 HOH A 227 727 245 HOH HOH . G 4 HOH A 228 728 232 HOH HOH . G 4 HOH A 229 729 154 HOH HOH . G 4 HOH A 230 730 231 HOH HOH . G 4 HOH A 231 731 100 HOH HOH . G 4 HOH A 232 732 152 HOH HOH . G 4 HOH A 233 733 226 HOH HOH . G 4 HOH A 234 734 116 HOH HOH . G 4 HOH A 235 735 259 HOH HOH . G 4 HOH A 236 736 194 HOH HOH . G 4 HOH A 237 737 235 HOH HOH . G 4 HOH A 238 738 118 HOH HOH . G 4 HOH A 239 739 234 HOH HOH . G 4 HOH A 240 740 128 HOH HOH . G 4 HOH A 241 741 141 HOH HOH . G 4 HOH A 242 742 246 HOH HOH . G 4 HOH A 243 743 202 HOH HOH . G 4 HOH A 244 744 130 HOH HOH . G 4 HOH A 245 745 233 HOH HOH . G 4 HOH A 246 746 229 HOH HOH . G 4 HOH A 247 747 176 HOH HOH . G 4 HOH A 248 748 199 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 -9.924 38.04 -4.099 1 20.96 0 C1 GOL 404 A 1 HETATM 2 O O1 GOL . . . E 3 -10.785 38.704 -3.159 1 18.63 0 O1 GOL 404 A 1 HETATM 3 C C2 GOL . . . E 3 -10.431 36.763 -4.741 1 26.28 0 C2 GOL 404 A 1 HETATM 4 O O2 GOL . . . E 3 -11.858 36.612 -4.737 1 18.4 0 O2 GOL 404 A 1 HETATM 5 C C3 GOL . . . E 3 -9.753 36.52 -6.082 1 21.68 0 C3 GOL 404 A 1 HETATM 6 O O3 GOL . . . E 3 -10.456 35.8 -7.1 1 16.32 0 O3 GOL 404 A 1 HETATM 7 H H11 GOL . . . E 3 -9.075 37.831 -3.638 1 21.46 0 H11 GOL 404 A 1 HETATM 8 H H12 GOL . . . E 3 -9.712 38.683 -4.819 1 21.45 0 H12 GOL 404 A 1 HETATM 9 H HO1 GOL . . . E 3 -10.389 39.396 -2.881 1 18.59 0 HO1 GOL 404 A 1 HETATM 10 H H2 GOL . . . E 3 -10.099 36.043 -4.162 1 22.58 0 H2 GOL 404 A 1 HETATM 11 H HO2 GOL . . . E 3 -12.101 36.403 -5.521 1 18.39 0 HO2 GOL 404 A 1 HETATM 12 H H31 GOL . . . E 3 -8.909 36.04 -5.905 1 21.16 0 H31 GOL 404 A 1 HETATM 13 H H32 GOL . . . E 3 -9.507 37.4 -6.459 1 21.16 0 H32 GOL 404 A 1 HETATM 14 H HO3 GOL . . . E 3 -11.214 35.575 -6.797 1 17.88 0 HO3 GOL 404 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 52 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 1319 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 14 #