data_8CMZ # _model_server_result.job_id f2pDch4izvK4JDW9UFZ20g _model_server_result.datetime_utc '2025-03-06 08:08:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cmz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1805}' # _entry.id 8CMZ # _exptl.entry_id 8CMZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CMZ _cell.length_a 87.181 _cell.length_b 145.095 _cell.length_c 154.783 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CMZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 391 A CYS 1444 1_555 A SG CYS 391 A CYS 1444 3_555 ? A ? ? A ? ? ? ? ? ? ? 2.394 ? disulf ? disulf2 A SG CYS 391 A CYS 1444 1_555 A SG CYS 391 A CYS 1444 3_555 ? B ? ? B ? ? ? ? ? ? ? 2.394 ? metalc ? metalc1 A SG CYS 146 A CYS 1199 1_555 B ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc2 A SG CYS 147 A CYS 1200 1_555 B ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc3 A SG CYS 230 A CYS 1283 1_555 C ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc4 A SG CYS 233 A CYS 1286 1_555 C ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc5 A ND1 HIS 238 A HIS 1291 1_555 B ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc6 A SG CYS 241 A CYS 1294 1_555 B ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc7 A SG CYS 255 A CYS 1308 1_555 C ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.55 ? metalc ? metalc8 A SG CYS 258 A CYS 1311 1_555 C ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? metalc ? metalc9 A SG CYS 600 A CYS 1710 1_555 D ZN ZN . A ZN 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.739 ? metalc ? metalc10 A SG CYS 613 A CYS 1723 1_555 E ZN ZN . A ZN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc11 A SG CYS 619 A CYS 1729 1_555 D ZN ZN . A ZN 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc12 A NE2 HIS 628 A HIS 1738 1_555 E ZN ZN . A ZN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.608 ? metalc ? metalc13 A ND1 HIS 630 A HIS 1740 1_555 E ZN ZN . A ZN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 8CMZ _atom_sites.fract_transf_matrix[1][1] 0.01147 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006892 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1801 1801 ZN ZN . C 2 ZN A 1 1802 1802 ZN ZN . D 2 ZN A 1 1803 1803 ZN ZN . E 2 ZN A 1 1804 1804 ZN ZN . F 3 COA A 1 1805 1901 COA COA . G 4 HOH A 1 1901 2 HOH HOH . G 4 HOH A 2 1902 11 HOH HOH . G 4 HOH A 3 1903 8 HOH HOH . G 4 HOH A 4 1904 6 HOH HOH . G 4 HOH A 5 1905 12 HOH HOH . G 4 HOH A 6 1906 7 HOH HOH . G 4 HOH A 7 1907 10 HOH HOH . G 4 HOH A 8 1908 5 HOH HOH . G 4 HOH A 9 1909 3 HOH HOH . G 4 HOH A 10 1910 1 HOH HOH . G 4 HOH A 11 1911 4 HOH HOH . G 4 HOH A 12 1912 13 HOH HOH . G 4 HOH A 13 1913 9 HOH HOH . G 4 HOH A 14 1914 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . F 3 -4.853 53.287 4.828 1 117.96 ? N1A COA 1805 A 1 HETATM 2 C C2A COA . . . F 3 -4.395 52.559 3.805 1 118.65 ? C2A COA 1805 A 1 HETATM 3 N N3A COA . . . F 3 -4.088 51.26 3.771 1 125.72 ? N3A COA 1805 A 1 HETATM 4 C C4A COA . . . F 3 -4.29 50.683 4.966 1 126.86 ? C4A COA 1805 A 1 HETATM 5 C C5A COA . . . F 3 -4.737 51.311 6.114 1 122.06 ? C5A COA 1805 A 1 HETATM 6 C C6A COA . . . F 3 -5.044 52.678 6.023 1 128.64 ? C6A COA 1805 A 1 HETATM 7 N N6A COA . . . F 3 -5.559 53.391 7.03 1 141.23 ? N6A COA 1805 A 1 HETATM 8 N N7A COA . . . F 3 -4.825 50.397 7.16 1 112.64 ? N7A COA 1805 A 1 HETATM 9 C C8A COA . . . F 3 -4.449 49.268 6.621 1 123.39 ? C8A COA 1805 A 1 HETATM 10 N N9A COA . . . F 3 -4.126 49.358 5.287 1 129.27 ? N9A COA 1805 A 1 HETATM 11 C C1B COA . . . F 3 -3.819 48.248 4.396 1 130.51 ? C1B COA 1805 A 1 HETATM 12 C C2B COA . . . F 3 -2.656 47.37 4.866 1 117.55 ? C2B COA 1805 A 1 HETATM 13 O O2B COA . . . F 3 -1.442 47.816 4.271 1 113.93 ? O2B COA 1805 A 1 HETATM 14 C C3B COA . . . F 3 -3.083 45.995 4.347 1 119.68 ? C3B COA 1805 A 1 HETATM 15 O O3B COA . . . F 3 -2.867 45.876 2.923 1 118.97 ? O3B COA 1805 A 1 HETATM 16 P P3B COA . . . F 3 -1.577 45.338 2.121 1 118.93 ? P3B COA 1805 A 1 HETATM 17 O O7A COA . . . F 3 -1.046 44 2.593 1 110.6 ? O7A COA 1805 A 1 HETATM 18 O O8A COA . . . F 3 -0.533 46.454 2.294 1 125.08 ? O8A COA 1805 A 1 HETATM 19 O O9A COA . . . F 3 -2.05 45.318 0.66 1 124.31 ? O9A COA 1805 A 1 HETATM 20 C C4B COA . . . F 3 -4.604 46.025 4.438 1 128.17 ? C4B COA 1805 A 1 HETATM 21 O O4B COA . . . F 3 -4.968 47.419 4.322 1 141.04 ? O4B COA 1805 A 1 HETATM 22 C C5B COA . . . F 3 -5.227 45.422 5.675 1 128.39 ? C5B COA 1805 A 1 HETATM 23 O O5B COA . . . F 3 -5.302 46.427 6.711 1 135.25 ? O5B COA 1805 A 1 HETATM 24 P P1A COA . . . F 3 -5.709 46.049 8.242 1 133.02 ? P1A COA 1805 A 1 HETATM 25 O O1A COA . . . F 3 -7.076 46.542 8.568 1 133.96 ? O1A COA 1805 A 1 HETATM 26 O O2A COA . . . F 3 -4.559 46.56 9.146 1 117.23 ? O2A COA 1805 A 1 HETATM 27 O O3A COA . . . F 3 -5.639 44.457 8.252 1 118.96 ? O3A COA 1805 A 1 HETATM 28 P P2A COA . . . F 3 -4.964 43.341 9.166 1 115.01 ? P2A COA 1805 A 1 HETATM 29 O O4A COA . . . F 3 -5.661 42.059 8.917 1 115.04 ? O4A COA 1805 A 1 HETATM 30 O O5A COA . . . F 3 -3.461 43.327 8.819 1 117.43 ? O5A COA 1805 A 1 HETATM 31 O O6A COA . . . F 3 -5.053 43.826 10.747 1 132.96 ? O6A COA 1805 A 1 HETATM 32 C CBP COA . . . F 3 -6.077 44.466 12.864 1 121.91 ? CBP COA 1805 A 1 HETATM 33 C CCP COA . . . F 3 -6.285 43.811 11.502 1 136 ? CCP COA 1805 A 1 HETATM 34 C CDP COA . . . F 3 -7.416 45.033 13.348 1 115.29 ? CDP COA 1805 A 1 HETATM 35 C CEP COA . . . F 3 -5.623 43.393 13.858 1 116.6 ? CEP COA 1805 A 1 HETATM 36 C CAP COA . . . F 3 -5.03 45.605 12.763 1 116.25 ? CAP COA 1805 A 1 HETATM 37 O OAP COA . . . F 3 -5.587 46.714 12.074 1 116.53 ? OAP COA 1805 A 1 HETATM 38 C C9P COA . . . F 3 -4.414 46.085 14.069 1 104.84 ? C9P COA 1805 A 1 HETATM 39 O O9P COA . . . F 3 -3.408 45.553 14.519 1 101.09 ? O9P COA 1805 A 1 HETATM 40 N N8P COA . . . F 3 -4.986 47.138 14.647 1 115.52 ? N8P COA 1805 A 1 HETATM 41 C C7P COA . . . F 3 -4.445 47.741 15.856 1 110.54 ? C7P COA 1805 A 1 HETATM 42 C C6P COA . . . F 3 -5.379 48.778 16.401 1 109.42 ? C6P COA 1805 A 1 HETATM 43 C C5P COA . . . F 3 -6.798 48.531 15.957 1 112.14 ? C5P COA 1805 A 1 HETATM 44 O O5P COA . . . F 3 -7.169 48.807 14.817 1 109.05 ? O5P COA 1805 A 1 HETATM 45 N N4P COA . . . F 3 -7.599 47.989 16.874 1 122.32 ? N4P COA 1805 A 1 HETATM 46 C C3P COA . . . F 3 -9.001 47.676 16.64 1 127.1 ? C3P COA 1805 A 1 HETATM 47 C C2P COA . . . F 3 -9.638 47.014 17.848 1 132.2 ? C2P COA 1805 A 1 HETATM 48 S S1P COA . . . F 3 -11.436 47.107 17.631 1 141.85 ? S1P COA 1805 A 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #