data_8CNB # _model_server_result.job_id jgwfQSTBtxzsObScpG9fsA _model_server_result.datetime_utc '2025-03-06 08:37:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cnb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":1805}' # _entry.id 8CNB # _exptl.entry_id 8CNB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 767.534 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COENZYME A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CNB _cell.length_a 86.669 _cell.length_b 144.819 _cell.length_c 155.44 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CNB _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NH1 ARG 372 A ARG 1446 1_555 F O5A COA . A COA 1805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.304 ? metalc ? metalc1 A SG CYS 125 A CYS 1199 1_555 B ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc2 A SG CYS 126 A CYS 1200 1_555 B ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc3 A SG CYS 209 A CYS 1283 1_555 C ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc4 A SG CYS 212 A CYS 1286 1_555 C ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc5 A ND1 HIS 217 A HIS 1291 1_555 B ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc6 A SG CYS 220 A CYS 1294 1_555 B ZN ZN . A ZN 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc7 A SG CYS 234 A CYS 1308 1_555 C ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.969 ? metalc ? metalc8 A SG CYS 237 A CYS 1311 1_555 C ZN ZN . A ZN 1802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? metalc ? metalc9 A SG CYS 576 A CYS 1707 1_555 D ZN ZN . A ZN 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.735 ? metalc ? metalc10 A SG CYS 579 A CYS 1710 1_555 D ZN ZN . A ZN 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc11 A SG CYS 589 A CYS 1720 1_555 E ZN ZN . A ZN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? metalc ? metalc12 A SG CYS 592 A CYS 1723 1_555 E ZN ZN . A ZN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc13 A SG CYS 598 A CYS 1729 1_555 D ZN ZN . A ZN 1803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc14 A NE2 HIS 607 A HIS 1738 1_555 E ZN ZN . A ZN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc15 A ND1 HIS 609 A HIS 1740 1_555 E ZN ZN . A ZN 1804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? # _chem_comp.formula 'C21 H36 N7 O16 P3 S' _chem_comp.formula_weight 767.534 _chem_comp.id COA _chem_comp.mon_nstd_flag . _chem_comp.name 'COENZYME A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A COA sing 70 n y N1A C6A COA doub 71 n y C2A N3A COA doub 72 n y C2A H2A COA sing 73 n n N3A C4A COA sing 74 n y C4A C5A COA doub 75 n y C4A N9A COA sing 76 n y C5A C6A COA sing 77 n y C5A N7A COA sing 78 n y C6A N6A COA sing 79 n n N6A H61A COA sing 80 n n N6A H62A COA sing 81 n n N7A C8A COA doub 82 n y C8A N9A COA sing 83 n y C8A H8A COA sing 84 n n N9A C1B COA sing 85 n n C1B C2B COA sing 86 n n C1B O4B COA sing 87 n n C1B H1B COA sing 88 n n C2B O2B COA sing 89 n n C2B C3B COA sing 90 n n C2B H2B COA sing 91 n n O2B HO2A COA sing 92 n n C3B O3B COA sing 93 n n C3B C4B COA sing 94 n n C3B H3B COA sing 95 n n O3B P3B COA sing 96 n n P3B O7A COA doub 97 n n P3B O8A COA sing 98 n n P3B O9A COA sing 99 n n O8A HOA8 COA sing 100 n n O9A HOA9 COA sing 101 n n C4B O4B COA sing 102 n n C4B C5B COA sing 103 n n C4B H4B COA sing 104 n n C5B O5B COA sing 105 n n C5B H51A COA sing 106 n n C5B H52A COA sing 107 n n O5B P1A COA sing 108 n n P1A O1A COA doub 109 n n P1A O2A COA sing 110 n n P1A O3A COA sing 111 n n O2A HOA2 COA sing 112 n n O3A P2A COA sing 113 n n P2A O4A COA doub 114 n n P2A O5A COA sing 115 n n P2A O6A COA sing 116 n n O5A HOA5 COA sing 117 n n O6A CCP COA sing 118 n n CBP CCP COA sing 119 n n CBP CDP COA sing 120 n n CBP CEP COA sing 121 n n CBP CAP COA sing 122 n n CCP H121 COA sing 123 n n CCP H122 COA sing 124 n n CDP H131 COA sing 125 n n CDP H132 COA sing 126 n n CDP H133 COA sing 127 n n CEP H141 COA sing 128 n n CEP H142 COA sing 129 n n CEP H143 COA sing 130 n n CAP OAP COA sing 131 n n CAP C9P COA sing 132 n n CAP H10 COA sing 133 n n OAP HO1 COA sing 134 n n C9P O9P COA doub 135 n n C9P N8P COA sing 136 n n N8P C7P COA sing 137 n n N8P HN8 COA sing 138 n n C7P C6P COA sing 139 n n C7P H71 COA sing 140 n n C7P H72 COA sing 141 n n C6P C5P COA sing 142 n n C6P H61 COA sing 143 n n C6P H62 COA sing 144 n n C5P O5P COA doub 145 n n C5P N4P COA sing 146 n n N4P C3P COA sing 147 n n N4P HN4 COA sing 148 n n C3P C2P COA sing 149 n n C3P H31 COA sing 150 n n C3P H32 COA sing 151 n n C2P S1P COA sing 152 n n C2P H21 COA sing 153 n n C2P H22 COA sing 154 n n S1P HS1 COA sing 155 n n # _atom_sites.entry_id 8CNB _atom_sites.fract_transf_matrix[1][1] 0.011538 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006905 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006433 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 1801 1801 ZN ZN . C 2 ZN A 1 1802 1802 ZN ZN . D 2 ZN A 1 1803 1803 ZN ZN . E 2 ZN A 1 1804 1804 ZN ZN . F 3 COA A 1 1805 1901 COA COA . G 4 HOH A 1 1901 26 HOH HOH . G 4 HOH A 2 1902 25 HOH HOH . G 4 HOH A 3 1903 29 HOH HOH . G 4 HOH A 4 1904 53 HOH HOH . G 4 HOH A 5 1905 48 HOH HOH . G 4 HOH A 6 1906 47 HOH HOH . G 4 HOH A 7 1907 14 HOH HOH . G 4 HOH A 8 1908 22 HOH HOH . G 4 HOH A 9 1909 9 HOH HOH . G 4 HOH A 10 1910 5 HOH HOH . G 4 HOH A 11 1911 17 HOH HOH . G 4 HOH A 12 1912 41 HOH HOH . G 4 HOH A 13 1913 27 HOH HOH . G 4 HOH A 14 1914 24 HOH HOH . G 4 HOH A 15 1915 8 HOH HOH . G 4 HOH A 16 1916 4 HOH HOH . G 4 HOH A 17 1917 43 HOH HOH . G 4 HOH A 18 1918 18 HOH HOH . G 4 HOH A 19 1919 42 HOH HOH . G 4 HOH A 20 1920 21 HOH HOH . G 4 HOH A 21 1921 16 HOH HOH . G 4 HOH A 22 1922 49 HOH HOH . G 4 HOH A 23 1923 28 HOH HOH . G 4 HOH A 24 1924 50 HOH HOH . G 4 HOH A 25 1925 44 HOH HOH . G 4 HOH A 26 1926 39 HOH HOH . G 4 HOH A 27 1927 2 HOH HOH . G 4 HOH A 28 1928 1 HOH HOH . G 4 HOH A 29 1929 19 HOH HOH . G 4 HOH A 30 1930 45 HOH HOH . G 4 HOH A 31 1931 40 HOH HOH . G 4 HOH A 32 1932 52 HOH HOH . G 4 HOH A 33 1933 6 HOH HOH . G 4 HOH A 34 1934 7 HOH HOH . G 4 HOH A 35 1935 46 HOH HOH . G 4 HOH A 36 1936 12 HOH HOH . G 4 HOH A 37 1937 20 HOH HOH . G 4 HOH A 38 1938 38 HOH HOH . G 4 HOH A 39 1939 32 HOH HOH . G 4 HOH A 40 1940 30 HOH HOH . G 4 HOH A 41 1941 31 HOH HOH . G 4 HOH A 42 1942 34 HOH HOH . G 4 HOH A 43 1943 33 HOH HOH . G 4 HOH A 44 1944 11 HOH HOH . G 4 HOH A 45 1945 15 HOH HOH . G 4 HOH A 46 1946 23 HOH HOH . G 4 HOH A 47 1947 35 HOH HOH . G 4 HOH A 48 1948 36 HOH HOH . G 4 HOH A 49 1949 51 HOH HOH . G 4 HOH A 50 1950 3 HOH HOH . G 4 HOH A 51 1951 10 HOH HOH . G 4 HOH A 52 1952 13 HOH HOH . G 4 HOH A 53 1953 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A COA . . . F 3 -4.7 53.204 4.868 1 76.84 ? N1A COA 1805 A 1 HETATM 2 C C2A COA . . . F 3 -4.377 52.352 3.891 1 80.28 ? C2A COA 1805 A 1 HETATM 3 N N3A COA . . . F 3 -4.222 51.027 3.951 1 83.49 ? N3A COA 1805 A 1 HETATM 4 C C4A COA . . . F 3 -4.447 50.567 5.189 1 84.81 ? C4A COA 1805 A 1 HETATM 5 C C5A COA . . . F 3 -4.802 51.326 6.293 1 78.45 ? C5A COA 1805 A 1 HETATM 6 C C6A COA . . . F 3 -4.912 52.716 6.111 1 79.42 ? C6A COA 1805 A 1 HETATM 7 N N6A COA . . . F 3 -5.171 53.581 7.096 1 90.95 ? N6A COA 1805 A 1 HETATM 8 N N7A COA . . . F 3 -4.98 50.504 7.404 1 80.7 ? N7A COA 1805 A 1 HETATM 9 C C8A COA . . . F 3 -4.723 49.302 6.95 1 80.36 ? C8A COA 1805 A 1 HETATM 10 N N9A COA . . . F 3 -4.376 49.265 5.622 1 83.06 ? N9A COA 1805 A 1 HETATM 11 C C1B COA . . . F 3 -3.951 48.084 4.864 1 77.61 ? C1B COA 1805 A 1 HETATM 12 C C2B COA . . . F 3 -2.733 47.365 5.439 1 75.86 ? C2B COA 1805 A 1 HETATM 13 O O2B COA . . . F 3 -1.517 47.903 4.928 1 74.31 ? O2B COA 1805 A 1 HETATM 14 C C3B COA . . . F 3 -2.963 45.938 4.932 1 77.27 ? C3B COA 1805 A 1 HETATM 15 O O3B COA . . . F 3 -2.518 45.766 3.572 1 77.68 ? O3B COA 1805 A 1 HETATM 16 P P3B COA . . . F 3 -1.356 44.794 3.115 1 87.02 ? P3B COA 1805 A 1 HETATM 17 O O7A COA . . . F 3 -1.549 43.454 3.763 1 96.9 ? O7A COA 1805 A 1 HETATM 18 O O8A COA . . . F 3 -0.02 45.456 3.476 1 103.31 ? O8A COA 1805 A 1 HETATM 19 O O9A COA . . . F 3 -1.421 44.73 1.584 1 90.26 ? O9A COA 1805 A 1 HETATM 20 C C4B COA . . . F 3 -4.477 45.795 4.852 1 79.58 ? C4B COA 1805 A 1 HETATM 21 O O4B COA . . . F 3 -5.004 47.139 4.865 1 79.61 ? O4B COA 1805 A 1 HETATM 22 C C5B COA . . . F 3 -5.078 45.022 5.994 1 98.73 ? C5B COA 1805 A 1 HETATM 23 O O5B COA . . . F 3 -4.947 45.875 7.151 1 103.1 ? O5B COA 1805 A 1 HETATM 24 P P1A COA . . . F 3 -5.798 45.593 8.496 1 94.76 ? P1A COA 1805 A 1 HETATM 25 O O1A COA . . . F 3 -7.166 46.185 8.587 1 103.9 ? O1A COA 1805 A 1 HETATM 26 O O2A COA . . . F 3 -4.862 45.961 9.638 1 92.25 ? O2A COA 1805 A 1 HETATM 27 O O3A COA . . . F 3 -5.812 44.008 8.411 1 80.61 ? O3A COA 1805 A 1 HETATM 28 P P2A COA . . . F 3 -5.146 42.991 9.438 1 79.7 ? P2A COA 1805 A 1 HETATM 29 O O4A COA . . . F 3 -6.019 41.817 9.552 1 81.92 ? O4A COA 1805 A 1 HETATM 30 O O5A COA . . . F 3 -3.608 42.876 9.041 1 98.22 ? O5A COA 1805 A 1 HETATM 31 O O6A COA . . . F 3 -5.21 43.603 10.967 1 83.88 ? O6A COA 1805 A 1 HETATM 32 C CBP COA . . . F 3 -6.174 44.282 13.091 1 78.73 ? CBP COA 1805 A 1 HETATM 33 C CCP COA . . . F 3 -6.453 43.814 11.667 1 80.15 ? CCP COA 1805 A 1 HETATM 34 C CDP COA . . . F 3 -7.458 44.861 13.697 1 80.28 ? CDP COA 1805 A 1 HETATM 35 C CEP COA . . . F 3 -5.733 43.072 13.918 1 78.49 ? CEP COA 1805 A 1 HETATM 36 C CAP COA . . . F 3 -5.047 45.348 13.079 1 76.2 ? CAP COA 1805 A 1 HETATM 37 O OAP COA . . . F 3 -5.358 46.53 12.368 1 88.82 ? OAP COA 1805 A 1 HETATM 38 C C9P COA . . . F 3 -4.6 45.699 14.48 1 74.66 ? C9P COA 1805 A 1 HETATM 39 O O9P COA . . . F 3 -3.665 45.109 14.995 1 73.32 ? O9P COA 1805 A 1 HETATM 40 N N8P COA . . . F 3 -5.251 46.678 15.099 1 74.89 ? N8P COA 1805 A 1 HETATM 41 C C7P COA . . . F 3 -4.891 47.054 16.455 1 73.56 ? C7P COA 1805 A 1 HETATM 42 C C6P COA . . . F 3 -5.787 48.106 17.023 1 74.28 ? C6P COA 1805 A 1 HETATM 43 C C5P COA . . . F 3 -7.181 48.043 16.461 1 77.98 ? C5P COA 1805 A 1 HETATM 44 O O5P COA . . . F 3 -7.483 48.684 15.459 1 94.17 ? O5P COA 1805 A 1 HETATM 45 N N4P COA . . . F 3 -8.059 47.297 17.127 1 78.62 ? N4P COA 1805 A 1 HETATM 46 C C3P COA . . . F 3 -9.469 47.262 16.77 1 81.33 ? C3P COA 1805 A 1 HETATM 47 C C2P COA . . . F 3 -10.149 45.986 17.219 1 83.25 ? C2P COA 1805 A 1 HETATM 48 S S1P COA . . . F 3 -11.764 45.958 16.394 1 86.64 ? S1P COA 1805 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #