data_8CNH # _model_server_result.job_id sQzQe2mT19jZd4eq-8Q4kw _model_server_result.datetime_utc '2024-11-28 14:58:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cnh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8CNH # _exptl.entry_id 8CNH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 357.794 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl 2-[[3-(2-azanyl-6-chloranyl-pyrimidin-4-yl)-1-methyl-pyrazol-4-yl]methyl]benzoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8CNH _cell.length_a 99.14 _cell.length_b 99.14 _cell.length_c 99.601 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CNH _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall 'P 6c' _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 252 A ALA 252 1_555 A N CME 253 A CME 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C CME 253 A CME 253 1_555 A N THR 254 A THR 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? # _chem_comp.formula 'C17 H16 Cl N5 O2' _chem_comp.formula_weight 357.794 _chem_comp.id V6U _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl 2-[[3-(2-azanyl-6-chloranyl-pyrimidin-4-yl)-1-methyl-pyrazol-4-yl]methyl]benzoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C25 O23 V6U sing 403 n n O24 C22 V6U doub 404 n n C21 C10 V6U sing 405 n n C21 C13 V6U sing 406 n n O23 C22 V6U sing 407 n n C22 C12 V6U sing 408 n n N20 C06 V6U sing 409 n n C10 C11 V6U doub 410 n y C10 C09 V6U sing 411 n y C11 N07 V6U sing 412 n y N05 C06 V6U doub 413 n y N05 C04 V6U sing 414 n y C06 N01 V6U sing 415 n y C09 C04 V6U sing 416 n n C09 N08 V6U doub 417 n y C04 C03 V6U doub 418 n y C13 C12 V6U doub 419 n y C13 C14 V6U sing 420 n y N07 N08 V6U sing 421 n y N07 C18 V6U sing 422 n n N01 C02 V6U doub 423 n y C12 C17 V6U sing 424 n y C03 C02 V6U sing 425 n y C02 CL19 V6U sing 426 n n C14 C15 V6U doub 427 n y C17 C16 V6U doub 428 n y C15 C16 V6U sing 429 n y C14 H141 V6U sing 430 n n C15 H151 V6U sing 431 n n C16 H161 V6U sing 432 n n C17 H171 V6U sing 433 n n C18 H182 V6U sing 434 n n C18 H181 V6U sing 435 n n C18 H183 V6U sing 436 n n C03 H031 V6U sing 437 n n C11 H111 V6U sing 438 n n C21 H212 V6U sing 439 n n C21 H211 V6U sing 440 n n C25 H253 V6U sing 441 n n C25 H252 V6U sing 442 n n C25 H251 V6U sing 443 n n N20 H201 V6U sing 444 n n N20 H202 V6U sing 445 n n # _atom_sites.entry_id 8CNH _atom_sites.fract_transf_matrix[1][1] 0.010087 _atom_sites.fract_transf_matrix[1][2] 0.005824 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011647 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 V6U A 1 501 501 V6U 105 . C 3 DMS A 1 502 601 DMS DMS . D 3 DMS A 1 503 701 DMS DMS . E 3 DMS A 1 504 801 DMS DMS . F 4 EDO A 1 505 901 EDO EDO . G 3 DMS A 1 506 1001 DMS DMS . H 4 EDO A 1 507 1101 EDO EDO . I 4 EDO A 1 508 1201 EDO EDO . J 4 EDO A 1 509 1301 EDO EDO . K 4 EDO A 1 510 1401 EDO EDO . L 4 EDO A 1 511 1501 EDO EDO . M 3 DMS A 1 512 1601 DMS DMS . N 5 ACT A 1 513 1801 ACT ACT . O 4 EDO A 1 514 1901 EDO EDO . P 4 EDO A 1 515 2001 EDO EDO . Q 4 EDO A 1 516 2101 EDO EDO . R 6 HOH A 1 601 104 HOH HOH . R 6 HOH A 2 602 121 HOH HOH . R 6 HOH A 3 603 109 HOH HOH . R 6 HOH A 4 604 110 HOH HOH . R 6 HOH A 5 605 126 HOH HOH . R 6 HOH A 6 606 93 HOH HOH . R 6 HOH A 7 607 135 HOH HOH . R 6 HOH A 8 608 113 HOH HOH . R 6 HOH A 9 609 69 HOH HOH . R 6 HOH A 10 610 72 HOH HOH . R 6 HOH A 11 611 8 HOH HOH . R 6 HOH A 12 612 139 HOH HOH . R 6 HOH A 13 613 16 HOH HOH . R 6 HOH A 14 614 120 HOH HOH . R 6 HOH A 15 615 59 HOH HOH . R 6 HOH A 16 616 127 HOH HOH . R 6 HOH A 17 617 106 HOH HOH . R 6 HOH A 18 618 56 HOH HOH . R 6 HOH A 19 619 75 HOH HOH . R 6 HOH A 20 620 39 HOH HOH . R 6 HOH A 21 621 60 HOH HOH . R 6 HOH A 22 622 132 HOH HOH . R 6 HOH A 23 623 11 HOH HOH . R 6 HOH A 24 624 23 HOH HOH . R 6 HOH A 25 625 15 HOH HOH . R 6 HOH A 26 626 114 HOH HOH . R 6 HOH A 27 627 138 HOH HOH . R 6 HOH A 28 628 77 HOH HOH . R 6 HOH A 29 629 13 HOH HOH . R 6 HOH A 30 630 76 HOH HOH . R 6 HOH A 31 631 29 HOH HOH . R 6 HOH A 32 632 141 HOH HOH . R 6 HOH A 33 633 19 HOH HOH . R 6 HOH A 34 634 112 HOH HOH . R 6 HOH A 35 635 40 HOH HOH . R 6 HOH A 36 636 131 HOH HOH . R 6 HOH A 37 637 136 HOH HOH . R 6 HOH A 38 638 22 HOH HOH . R 6 HOH A 39 639 14 HOH HOH . R 6 HOH A 40 640 48 HOH HOH . R 6 HOH A 41 641 12 HOH HOH . R 6 HOH A 42 642 17 HOH HOH . R 6 HOH A 43 643 4 HOH HOH . R 6 HOH A 44 644 53 HOH HOH . R 6 HOH A 45 645 43 HOH HOH . R 6 HOH A 46 646 20 HOH HOH . R 6 HOH A 47 647 79 HOH HOH . R 6 HOH A 48 648 1 HOH HOH . R 6 HOH A 49 649 52 HOH HOH . R 6 HOH A 50 650 111 HOH HOH . R 6 HOH A 51 651 2 HOH HOH . R 6 HOH A 52 652 30 HOH HOH . R 6 HOH A 53 653 107 HOH HOH . R 6 HOH A 54 654 34 HOH HOH . R 6 HOH A 55 655 97 HOH HOH . R 6 HOH A 56 656 41 HOH HOH . R 6 HOH A 57 657 134 HOH HOH . R 6 HOH A 58 658 88 HOH HOH . R 6 HOH A 59 659 116 HOH HOH . R 6 HOH A 60 660 36 HOH HOH . R 6 HOH A 61 661 74 HOH HOH . R 6 HOH A 62 662 3 HOH HOH . R 6 HOH A 63 663 7 HOH HOH . R 6 HOH A 64 664 49 HOH HOH . R 6 HOH A 65 665 98 HOH HOH . R 6 HOH A 66 666 119 HOH HOH . R 6 HOH A 67 667 32 HOH HOH . R 6 HOH A 68 668 35 HOH HOH . R 6 HOH A 69 669 31 HOH HOH . R 6 HOH A 70 670 96 HOH HOH . R 6 HOH A 71 671 92 HOH HOH . R 6 HOH A 72 672 91 HOH HOH . R 6 HOH A 73 673 63 HOH HOH . R 6 HOH A 74 674 54 HOH HOH . R 6 HOH A 75 675 71 HOH HOH . R 6 HOH A 76 676 47 HOH HOH . R 6 HOH A 77 677 145 HOH HOH . R 6 HOH A 78 678 44 HOH HOH . R 6 HOH A 79 679 38 HOH HOH . R 6 HOH A 80 680 5 HOH HOH . R 6 HOH A 81 681 21 HOH HOH . R 6 HOH A 82 682 50 HOH HOH . R 6 HOH A 83 683 57 HOH HOH . R 6 HOH A 84 684 27 HOH HOH . R 6 HOH A 85 685 37 HOH HOH . R 6 HOH A 86 686 125 HOH HOH . R 6 HOH A 87 687 10 HOH HOH . R 6 HOH A 88 688 140 HOH HOH . R 6 HOH A 89 689 129 HOH HOH . R 6 HOH A 90 690 9 HOH HOH . R 6 HOH A 91 691 80 HOH HOH . R 6 HOH A 92 692 6 HOH HOH . R 6 HOH A 93 693 45 HOH HOH . R 6 HOH A 94 694 66 HOH HOH . R 6 HOH A 95 695 42 HOH HOH . R 6 HOH A 96 696 89 HOH HOH . R 6 HOH A 97 697 144 HOH HOH . R 6 HOH A 98 698 137 HOH HOH . R 6 HOH A 99 699 128 HOH HOH . R 6 HOH A 100 700 55 HOH HOH . R 6 HOH A 101 701 82 HOH HOH . R 6 HOH A 102 702 62 HOH HOH . R 6 HOH A 103 703 101 HOH HOH . R 6 HOH A 104 704 124 HOH HOH . R 6 HOH A 105 705 86 HOH HOH . R 6 HOH A 106 706 115 HOH HOH . R 6 HOH A 107 707 142 HOH HOH . R 6 HOH A 108 708 105 HOH HOH . R 6 HOH A 109 709 94 HOH HOH . R 6 HOH A 110 710 133 HOH HOH . R 6 HOH A 111 711 73 HOH HOH . R 6 HOH A 112 712 51 HOH HOH . R 6 HOH A 113 713 143 HOH HOH . R 6 HOH A 114 714 95 HOH HOH . R 6 HOH A 115 715 130 HOH HOH . R 6 HOH A 116 716 123 HOH HOH . R 6 HOH A 117 717 117 HOH HOH . R 6 HOH A 118 718 103 HOH HOH . R 6 HOH A 119 719 81 HOH HOH . R 6 HOH A 120 720 118 HOH HOH . R 6 HOH A 121 721 78 HOH HOH . R 6 HOH A 122 722 102 HOH HOH . R 6 HOH A 123 723 25 HOH HOH . R 6 HOH A 124 724 90 HOH HOH . R 6 HOH A 125 725 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C12 V6U . . . B 2 -29.7 -1.027 1.239 1 35.5 ? C12 V6U 501 A 1 HETATM 2 C C13 V6U . . . B 2 -28.89 0.197 0.983 1 32.82 ? C13 V6U 501 A 1 HETATM 3 C C14 V6U . . . B 2 -27.765 0.514 1.899 1 31.27 ? C14 V6U 501 A 1 HETATM 4 C C15 V6U . . . B 2 -27.457 -0.429 3.018 1 31.74 ? C15 V6U 501 A 1 HETATM 5 C C16 V6U . . . B 2 -28.266 -1.643 3.243 1 32.13 ? C16 V6U 501 A 1 HETATM 6 C C17 V6U . . . B 2 -29.393 -1.959 2.37 1 33.93 ? C17 V6U 501 A 1 HETATM 7 C C18 V6U . . . B 2 -33.126 4.019 1.369 1 35.47 ? C18 V6U 501 A 1 HETATM 8 C C02 V6U . . . B 2 -26.738 5.898 1.519 1 28.54 ? C02 V6U 501 A 1 HETATM 9 C C03 V6U . . . B 2 -28.05 5.465 1.387 1 25.54 ? C03 V6U 501 A 1 HETATM 10 C C04 V6U . . . B 2 -28.245 4.149 0.89 1 26.83 ? C04 V6U 501 A 1 HETATM 11 C C06 V6U . . . B 2 -25.819 3.898 0.704 1 27.47 ? C06 V6U 501 A 1 HETATM 12 C C09 V6U . . . B 2 -29.642 3.604 0.818 1 31.79 ? C09 V6U 501 A 1 HETATM 13 C C10 V6U . . . B 2 -30.077 2.337 0.427 1 33.3 ? C10 V6U 501 A 1 HETATM 14 C C11 V6U . . . B 2 -31.429 2.355 0.556 1 32.27 ? C11 V6U 501 A 1 HETATM 15 C C21 V6U . . . B 2 -29.229 1.165 -0.121 1 32.68 ? C21 V6U 501 A 1 HETATM 16 C C22 V6U . . . B 2 -30.812 -1.454 0.348 1 39.23 ? C22 V6U 501 A 1 HETATM 17 C C25 V6U . . . B 2 -32.131 -3.232 -0.545 1 44.7 ? C25 V6U 501 A 1 HETATM 18 N N01 V6U . . . B 2 -25.618 5.203 1.169 1 27.59 ? N01 V6U 501 A 1 HETATM 19 N N05 V6U . . . B 2 -27.134 3.38 0.575 1 26.27 ? N05 V6U 501 A 1 HETATM 20 N N07 V6U . . . B 2 -31.78 3.575 1.021 1 33.15 ? N07 V6U 501 A 1 HETATM 21 N N08 V6U . . . B 2 -30.658 4.337 1.208 1 32.18 ? N08 V6U 501 A 1 HETATM 22 N N20 V6U . . . B 2 -24.661 3.156 0.404 1 30.07 ? N20 V6U 501 A 1 HETATM 23 O O23 V6U . . . B 2 -31.004 -2.848 0.204 1 43.25 ? O23 V6U 501 A 1 HETATM 24 O O24 V6U . . . B 2 -31.421 -0.661 -0.212 1 39.17 ? O24 V6U 501 A 1 HETATM 25 CL CL19 V6U . . . B 2 -26.524 7.554 2.034 1 31.34 ? CL19 V6U 501 A 1 HETATM 26 H H141 V6U . . . B 2 -27.261 1.287 1.779 1 37.52 ? H141 V6U 501 A 1 HETATM 27 H H151 V6U . . . B 2 -26.741 -0.247 3.583 1 38.09 ? H151 V6U 501 A 1 HETATM 28 H H161 V6U . . . B 2 -28.055 -2.212 3.948 1 38.56 ? H161 V6U 501 A 1 HETATM 29 H H171 V6U . . . B 2 -29.908 -2.72 2.514 1 40.72 ? H171 V6U 501 A 1 HETATM 30 H H182 V6U . . . B 2 -33.54 3.367 1.955 1 42.56 ? H182 V6U 501 A 1 HETATM 31 H H181 V6U . . . B 2 -33.655 4.11 0.562 1 42.56 ? H181 V6U 501 A 1 HETATM 32 H H183 V6U . . . B 2 -33.077 4.876 1.822 1 42.56 ? H183 V6U 501 A 1 HETATM 33 H H031 V6U . . . B 2 -28.767 6.011 1.614 1 30.65 ? H031 V6U 501 A 1 HETATM 34 H H111 V6U . . . B 2 -32.009 1.655 0.359 1 38.73 ? H111 V6U 501 A 1 HETATM 35 H H212 V6U . . . B 2 -28.408 1.516 -0.5 1 39.22 ? H212 V6U 501 A 1 HETATM 36 H H211 V6U . . . B 2 -29.731 0.702 -0.809 1 39.22 ? H211 V6U 501 A 1 HETATM 37 H H253 V6U . . . B 2 -32.068 -4.175 -0.764 1 53.64 ? H253 V6U 501 A 1 HETATM 38 H H252 V6U . . . B 2 -32.167 -2.712 -1.364 1 53.64 ? H252 V6U 501 A 1 HETATM 39 H H251 V6U . . . B 2 -32.934 -3.073 -0.025 1 53.64 ? H251 V6U 501 A 1 HETATM 40 H H201 V6U . . . B 2 -24.706 2.3 0.309 1 36.08 ? H201 V6U 501 A 1 HETATM 41 H H202 V6U . . . B 2 -23.896 3.549 0.309 1 36.08 ? H202 V6U 501 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 41 #