data_8CNJ # _model_server_result.job_id TCwpkMegspeRVDFaXkrDDA _model_server_result.datetime_utc '2024-11-04 17:55:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cnj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":202}' # _entry.id 8CNJ # _exptl.entry_id 8CNJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 66.007 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BERYLLIUM TRIFLUORIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CNJ _cell.length_a 45.433 _cell.length_b 51.957 _cell.length_c 136.149 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CNJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 17 A SER 17 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc3 C O3B GDP . A GDP 201 1_555 D BE BEF . A BEF 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.669 ? metalc ? metalc4 C O1B GDP . A GDP 201 1_555 E MG MG . A MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc5 E MG MG . A MG 203 1_555 J O HOH . A HOH 315 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc6 E MG MG . A MG 203 1_555 J O HOH . A HOH 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc7 B OG SER 17 B SER 17 1_555 I MG MG . B MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc8 B OG1 THR 35 B THR 35 1_555 I MG MG . B MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc9 F O2B GDP . B GDP 201 1_555 G BE BEF . B BEF 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.684 ? metalc ? metalc10 F O3B GDP . B GDP 201 1_555 I MG MG . B MG 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc11 I MG MG . B MG 204 1_555 K O HOH . B HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc12 I MG MG . B MG 204 1_555 K O HOH . B HOH 325 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? # _chem_comp.formula 'Be F3 -1' _chem_comp.formula_weight 66.007 _chem_comp.id BEF _chem_comp.mon_nstd_flag . _chem_comp.name 'BERYLLIUM TRIFLUORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BE F1 BEF sing 70 n n BE F2 BEF sing 71 n n BE F3 BEF sing 72 n n # _atom_sites.entry_id 8CNJ _atom_sites.fract_transf_matrix[1][1] 0.02201 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019247 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007345 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GDP A 1 201 201 GDP GDP . D 3 BEF A 1 202 202 BEF BEF . E 4 MG A 1 203 1 MG MG . F 2 GDP B 1 201 201 GDP GDP . G 3 BEF B 1 202 202 BEF BEF . H 5 MPD B 1 203 203 MPD MPD . I 4 MG B 1 204 2 MG MG . J 6 HOH A 1 301 224 HOH HOH . J 6 HOH A 2 302 24 HOH HOH . J 6 HOH A 3 303 114 HOH HOH . J 6 HOH A 4 304 117 HOH HOH . J 6 HOH A 5 305 30 HOH HOH . J 6 HOH A 6 306 180 HOH HOH . J 6 HOH A 7 307 68 HOH HOH . J 6 HOH A 8 308 136 HOH HOH . J 6 HOH A 9 309 125 HOH HOH . J 6 HOH A 10 310 19 HOH HOH . J 6 HOH A 11 311 83 HOH HOH . J 6 HOH A 12 312 140 HOH HOH . J 6 HOH A 13 313 164 HOH HOH . J 6 HOH A 14 314 247 HOH HOH . J 6 HOH A 15 315 2 HOH HOH . J 6 HOH A 16 316 246 HOH HOH . J 6 HOH A 17 317 297 HOH HOH . J 6 HOH A 18 318 310 HOH HOH . J 6 HOH A 19 319 27 HOH HOH . J 6 HOH A 20 320 280 HOH HOH . J 6 HOH A 21 321 274 HOH HOH . J 6 HOH A 22 322 131 HOH HOH . J 6 HOH A 23 323 116 HOH HOH . J 6 HOH A 24 324 17 HOH HOH . J 6 HOH A 25 325 139 HOH HOH . J 6 HOH A 26 326 62 HOH HOH . J 6 HOH A 27 327 157 HOH HOH . J 6 HOH A 28 328 178 HOH HOH . J 6 HOH A 29 329 67 HOH HOH . J 6 HOH A 30 330 134 HOH HOH . J 6 HOH A 31 331 228 HOH HOH . J 6 HOH A 32 332 204 HOH HOH . J 6 HOH A 33 333 160 HOH HOH . J 6 HOH A 34 334 208 HOH HOH . J 6 HOH A 35 335 183 HOH HOH . J 6 HOH A 36 336 75 HOH HOH . J 6 HOH A 37 337 64 HOH HOH . J 6 HOH A 38 338 59 HOH HOH . J 6 HOH A 39 339 38 HOH HOH . J 6 HOH A 40 340 74 HOH HOH . J 6 HOH A 41 341 263 HOH HOH . J 6 HOH A 42 342 1 HOH HOH . J 6 HOH A 43 343 76 HOH HOH . J 6 HOH A 44 344 90 HOH HOH . J 6 HOH A 45 345 110 HOH HOH . J 6 HOH A 46 346 272 HOH HOH . J 6 HOH A 47 347 209 HOH HOH . J 6 HOH A 48 348 218 HOH HOH . J 6 HOH A 49 349 70 HOH HOH . J 6 HOH A 50 350 166 HOH HOH . J 6 HOH A 51 351 135 HOH HOH . J 6 HOH A 52 352 308 HOH HOH . J 6 HOH A 53 353 85 HOH HOH . J 6 HOH A 54 354 169 HOH HOH . J 6 HOH A 55 355 84 HOH HOH . J 6 HOH A 56 356 16 HOH HOH . J 6 HOH A 57 357 31 HOH HOH . J 6 HOH A 58 358 4 HOH HOH . J 6 HOH A 59 359 155 HOH HOH . J 6 HOH A 60 360 172 HOH HOH . J 6 HOH A 61 361 40 HOH HOH . J 6 HOH A 62 362 112 HOH HOH . J 6 HOH A 63 363 162 HOH HOH . J 6 HOH A 64 364 167 HOH HOH . J 6 HOH A 65 365 51 HOH HOH . J 6 HOH A 66 366 102 HOH HOH . J 6 HOH A 67 367 29 HOH HOH . J 6 HOH A 68 368 48 HOH HOH . J 6 HOH A 69 369 25 HOH HOH . J 6 HOH A 70 370 82 HOH HOH . J 6 HOH A 71 371 78 HOH HOH . J 6 HOH A 72 372 94 HOH HOH . J 6 HOH A 73 373 121 HOH HOH . J 6 HOH A 74 374 95 HOH HOH . J 6 HOH A 75 375 57 HOH HOH . J 6 HOH A 76 376 270 HOH HOH . J 6 HOH A 77 377 300 HOH HOH . J 6 HOH A 78 378 278 HOH HOH . J 6 HOH A 79 379 22 HOH HOH . J 6 HOH A 80 380 108 HOH HOH . J 6 HOH A 81 381 150 HOH HOH . J 6 HOH A 82 382 181 HOH HOH . J 6 HOH A 83 383 15 HOH HOH . J 6 HOH A 84 384 92 HOH HOH . J 6 HOH A 85 385 49 HOH HOH . J 6 HOH A 86 386 33 HOH HOH . J 6 HOH A 87 387 20 HOH HOH . J 6 HOH A 88 388 244 HOH HOH . J 6 HOH A 89 389 79 HOH HOH . J 6 HOH A 90 390 81 HOH HOH . J 6 HOH A 91 391 28 HOH HOH . J 6 HOH A 92 392 91 HOH HOH . J 6 HOH A 93 393 93 HOH HOH . J 6 HOH A 94 394 39 HOH HOH . J 6 HOH A 95 395 26 HOH HOH . J 6 HOH A 96 396 147 HOH HOH . J 6 HOH A 97 397 109 HOH HOH . J 6 HOH A 98 398 99 HOH HOH . J 6 HOH A 99 399 142 HOH HOH . J 6 HOH A 100 400 283 HOH HOH . J 6 HOH A 101 401 211 HOH HOH . J 6 HOH A 102 402 161 HOH HOH . J 6 HOH A 103 403 61 HOH HOH . J 6 HOH A 104 404 14 HOH HOH . J 6 HOH A 105 405 287 HOH HOH . J 6 HOH A 106 406 174 HOH HOH . J 6 HOH A 107 407 66 HOH HOH . J 6 HOH A 108 408 202 HOH HOH . J 6 HOH A 109 409 185 HOH HOH . J 6 HOH A 110 410 205 HOH HOH . J 6 HOH A 111 411 301 HOH HOH . J 6 HOH A 112 412 298 HOH HOH . J 6 HOH A 113 413 201 HOH HOH . J 6 HOH A 114 414 148 HOH HOH . J 6 HOH A 115 415 146 HOH HOH . J 6 HOH A 116 416 63 HOH HOH . J 6 HOH A 117 417 311 HOH HOH . J 6 HOH A 118 418 304 HOH HOH . J 6 HOH A 119 419 54 HOH HOH . J 6 HOH A 120 420 98 HOH HOH . J 6 HOH A 121 421 295 HOH HOH . J 6 HOH A 122 422 124 HOH HOH . J 6 HOH A 123 423 186 HOH HOH . J 6 HOH A 124 424 196 HOH HOH . J 6 HOH A 125 425 223 HOH HOH . J 6 HOH A 126 426 141 HOH HOH . J 6 HOH A 127 427 262 HOH HOH . J 6 HOH A 128 428 302 HOH HOH . J 6 HOH A 129 429 115 HOH HOH . J 6 HOH A 130 430 242 HOH HOH . J 6 HOH A 131 431 207 HOH HOH . J 6 HOH A 132 432 305 HOH HOH . J 6 HOH A 133 433 97 HOH HOH . J 6 HOH A 134 434 194 HOH HOH . J 6 HOH A 135 435 269 HOH HOH . J 6 HOH A 136 436 23 HOH HOH . J 6 HOH A 137 437 235 HOH HOH . J 6 HOH A 138 438 290 HOH HOH . J 6 HOH A 139 439 187 HOH HOH . J 6 HOH A 140 440 210 HOH HOH . J 6 HOH A 141 441 226 HOH HOH . J 6 HOH A 142 442 217 HOH HOH . J 6 HOH A 143 443 195 HOH HOH . J 6 HOH A 144 444 309 HOH HOH . J 6 HOH A 145 445 197 HOH HOH . J 6 HOH A 146 446 293 HOH HOH . J 6 HOH A 147 447 191 HOH HOH . J 6 HOH A 148 448 206 HOH HOH . J 6 HOH A 149 449 144 HOH HOH . K 6 HOH B 1 301 138 HOH HOH . K 6 HOH B 2 302 258 HOH HOH . K 6 HOH B 3 303 220 HOH HOH . K 6 HOH B 4 304 88 HOH HOH . K 6 HOH B 5 305 152 HOH HOH . K 6 HOH B 6 306 101 HOH HOH . K 6 HOH B 7 307 241 HOH HOH . K 6 HOH B 8 308 184 HOH HOH . K 6 HOH B 9 309 13 HOH HOH . K 6 HOH B 10 310 53 HOH HOH . K 6 HOH B 11 311 128 HOH HOH . K 6 HOH B 12 312 36 HOH HOH . K 6 HOH B 13 313 6 HOH HOH . K 6 HOH B 14 314 188 HOH HOH . K 6 HOH B 15 315 42 HOH HOH . K 6 HOH B 16 316 251 HOH HOH . K 6 HOH B 17 317 171 HOH HOH . K 6 HOH B 18 318 267 HOH HOH . K 6 HOH B 19 319 37 HOH HOH . K 6 HOH B 20 320 18 HOH HOH . K 6 HOH B 21 321 21 HOH HOH . K 6 HOH B 22 322 69 HOH HOH . K 6 HOH B 23 323 149 HOH HOH . K 6 HOH B 24 324 306 HOH HOH . K 6 HOH B 25 325 5 HOH HOH . K 6 HOH B 26 326 165 HOH HOH . K 6 HOH B 27 327 56 HOH HOH . K 6 HOH B 28 328 275 HOH HOH . K 6 HOH B 29 329 281 HOH HOH . K 6 HOH B 30 330 170 HOH HOH . K 6 HOH B 31 331 168 HOH HOH . K 6 HOH B 32 332 41 HOH HOH . K 6 HOH B 33 333 12 HOH HOH . K 6 HOH B 34 334 264 HOH HOH . K 6 HOH B 35 335 45 HOH HOH . K 6 HOH B 36 336 137 HOH HOH . K 6 HOH B 37 337 257 HOH HOH . K 6 HOH B 38 338 122 HOH HOH . K 6 HOH B 39 339 173 HOH HOH . K 6 HOH B 40 340 227 HOH HOH . K 6 HOH B 41 341 87 HOH HOH . K 6 HOH B 42 342 256 HOH HOH . K 6 HOH B 43 343 60 HOH HOH . K 6 HOH B 44 344 221 HOH HOH . K 6 HOH B 45 345 52 HOH HOH . K 6 HOH B 46 346 35 HOH HOH . K 6 HOH B 47 347 127 HOH HOH . K 6 HOH B 48 348 198 HOH HOH . K 6 HOH B 49 349 58 HOH HOH . K 6 HOH B 50 350 123 HOH HOH . K 6 HOH B 51 351 103 HOH HOH . K 6 HOH B 52 352 129 HOH HOH . K 6 HOH B 53 353 299 HOH HOH . K 6 HOH B 54 354 34 HOH HOH . K 6 HOH B 55 355 259 HOH HOH . K 6 HOH B 56 356 156 HOH HOH . K 6 HOH B 57 357 9 HOH HOH . K 6 HOH B 58 358 77 HOH HOH . K 6 HOH B 59 359 32 HOH HOH . K 6 HOH B 60 360 189 HOH HOH . K 6 HOH B 61 361 163 HOH HOH . K 6 HOH B 62 362 182 HOH HOH . K 6 HOH B 63 363 120 HOH HOH . K 6 HOH B 64 364 153 HOH HOH . K 6 HOH B 65 365 118 HOH HOH . K 6 HOH B 66 366 289 HOH HOH . K 6 HOH B 67 367 307 HOH HOH . K 6 HOH B 68 368 71 HOH HOH . K 6 HOH B 69 369 245 HOH HOH . K 6 HOH B 70 370 8 HOH HOH . K 6 HOH B 71 371 193 HOH HOH . K 6 HOH B 72 372 254 HOH HOH . K 6 HOH B 73 373 80 HOH HOH . K 6 HOH B 74 374 11 HOH HOH . K 6 HOH B 75 375 72 HOH HOH . K 6 HOH B 76 376 86 HOH HOH . K 6 HOH B 77 377 96 HOH HOH . K 6 HOH B 78 378 44 HOH HOH . K 6 HOH B 79 379 47 HOH HOH . K 6 HOH B 80 380 46 HOH HOH . K 6 HOH B 81 381 200 HOH HOH . K 6 HOH B 82 382 203 HOH HOH . K 6 HOH B 83 383 303 HOH HOH . K 6 HOH B 84 384 10 HOH HOH . K 6 HOH B 85 385 288 HOH HOH . K 6 HOH B 86 386 133 HOH HOH . K 6 HOH B 87 387 119 HOH HOH . K 6 HOH B 88 388 65 HOH HOH . K 6 HOH B 89 389 89 HOH HOH . K 6 HOH B 90 390 158 HOH HOH . K 6 HOH B 91 391 111 HOH HOH . K 6 HOH B 92 392 177 HOH HOH . K 6 HOH B 93 393 192 HOH HOH . K 6 HOH B 94 394 277 HOH HOH . K 6 HOH B 95 395 179 HOH HOH . K 6 HOH B 96 396 126 HOH HOH . K 6 HOH B 97 397 213 HOH HOH . K 6 HOH B 98 398 237 HOH HOH . K 6 HOH B 99 399 100 HOH HOH . K 6 HOH B 100 400 292 HOH HOH . K 6 HOH B 101 401 252 HOH HOH . K 6 HOH B 102 402 176 HOH HOH . K 6 HOH B 103 403 276 HOH HOH . K 6 HOH B 104 404 294 HOH HOH . K 6 HOH B 105 405 214 HOH HOH . K 6 HOH B 106 406 279 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 BE BE BEF . . . D 3 -2.986 -4.659 1.205 1 11.55 0 BE BEF 202 A 1 HETATM 2 F F1 BEF . . . D 3 -3.034 -3.37 2.136 1 12.13 0 F1 BEF 202 A 1 HETATM 3 F F2 BEF . . . D 3 -1.47 -4.991 0.928 1 11.63 0 F2 BEF 202 A 1 HETATM 4 F F3 BEF . . . D 3 -3.723 -4.448 -0.166 1 11.48 0 F3 BEF 202 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #