data_8CO5
#
_model_server_result.job_id            Ln3hYOTiPQN4Ee3aZrB7GQ 
_model_server_result.datetime_utc      '2024-11-30 11:29:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8co5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":601}' 
#
_entry.id    8CO5 
#
_exptl.entry_id    8CO5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              586.678 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '3-[5-[(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-2-[[5-[(3-ethyl-4-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8CO5 
_cell.length_a            172.477 
_cell.length_b            172.477 
_cell.length_c            78.82 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CO5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        97 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 16_555 -y+1/2,-x+1/2,-z+1/2 0 -1 0 -1 0 0 0 0 -1 86.2385 86.2385 39.41 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 11 A CYS 20 1_555 B CBC V8U . A V8U 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? 
metalc ? metalc1 A OD1 ASP 158 A ASP 167 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? 
metalc ? metalc2 A O PHE 159 A PHE 168 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc3 C MG MG . A MG 602 1_555 D O HOH . A HOH 719 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? 
metalc ? metalc4 C MG MG . A MG 602 1_555 D O HOH . A HOH 735 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.685 ? 
metalc ? metalc5 C MG MG . A MG 602 1_555 D O HOH . A HOH 742 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? 
metalc ? metalc6 C MG MG . A MG 602 1_555 D O HOH . A HOH 751 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
#
_chem_comp.formula           'C33 H38 N4 O6' 
_chem_comp.formula_weight    586.678 
_chem_comp.id                V8U 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '3-[5-[(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-2-[[5-[(3-ethyl-4-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CBB CAB V8U doub 358 n n 
CAB C3B V8U sing 359 n n 
OB C4B V8U doub 360 n n 
C3B C4B V8U sing 361 n n 
C3B C2B V8U doub 362 n n 
C4B NB V8U sing 363 n n 
CMB C2B V8U sing 364 n n 
C2B C1B V8U sing 365 n n 
NB C1B V8U doub 366 n n 
C1B CHB V8U sing 367 n n 
CHB C4A V8U sing 368 n n 
CMA C3A V8U sing 369 n n 
OC C1C V8U doub 370 n n 
C4A C3A V8U doub 371 n y 
C4A NA V8U sing 372 n y 
C3A C2A V8U sing 373 n y 
O2A CGA V8U doub 374 n n 
O1A CGA V8U sing 375 n n 
C1C C2C V8U sing 376 n n 
C1C NC V8U sing 377 n n 
NA C1A V8U sing 378 n y 
CMC C2C V8U sing 379 n n 
CGA CBA V8U sing 380 n n 
C2C C3C V8U doub 381 n n 
C2A C1A V8U doub 382 n y 
C2A CAA V8U sing 383 n n 
NC C4C V8U doub 384 n n 
C1A CHA V8U sing 385 n n 
CBA CAA V8U sing 386 n n 
C4C C3C V8U sing 387 n n 
C4C CHD V8U sing 388 n n 
C3C CAC V8U sing 389 n n 
ND C4D V8U sing 390 n y 
ND C1D V8U sing 391 n y 
CHA C4D V8U sing 392 n n 
C4D C3D V8U doub 393 n y 
CAC CBC V8U sing 394 n n 
CHD C1D V8U sing 395 n n 
C1D C2D V8U doub 396 n y 
C3D C2D V8U sing 397 n y 
C3D CAD V8U sing 398 n n 
C2D CMD V8U sing 399 n n 
CBD CAD V8U sing 400 n n 
CBD CGD V8U sing 401 n n 
CGD O1D V8U doub 402 n n 
CGD O2D V8U sing 403 n n 
O2D H1 V8U sing 404 n n 
CBD H2 V8U sing 405 n n 
CBD H3 V8U sing 406 n n 
CAD H4 V8U sing 407 n n 
CAD H5 V8U sing 408 n n 
CMD H6 V8U sing 409 n n 
CMD H7 V8U sing 410 n n 
CMD H8 V8U sing 411 n n 
CHD H9 V8U sing 412 n n 
CHD H10 V8U sing 413 n n 
CAC H11 V8U sing 414 n n 
CAC H12 V8U sing 415 n n 
CBC H13 V8U sing 416 n n 
CBC H14 V8U sing 417 n n 
CBC H15 V8U sing 418 n n 
CMC H16 V8U sing 419 n n 
CMC H17 V8U sing 420 n n 
CMC H18 V8U sing 421 n n 
ND H19 V8U sing 422 n n 
CHA H20 V8U sing 423 n n 
CHA H21 V8U sing 424 n n 
CAA H22 V8U sing 425 n n 
CAA H23 V8U sing 426 n n 
CBA H24 V8U sing 427 n n 
CBA H25 V8U sing 428 n n 
O1A H26 V8U sing 429 n n 
CMA H27 V8U sing 430 n n 
CMA H28 V8U sing 431 n n 
CMA H29 V8U sing 432 n n 
NA H30 V8U sing 433 n n 
CHB H31 V8U sing 434 n n 
CHB H32 V8U sing 435 n n 
CMB H33 V8U sing 436 n n 
CMB H34 V8U sing 437 n n 
CMB H35 V8U sing 438 n n 
CAB H36 V8U sing 439 n n 
CBB H37 V8U sing 440 n n 
CBB H38 V8U sing 441 n n 
#
_atom_sites.entry_id                     8CO5 
_atom_sites.fract_transf_matrix[1][1]    0.005798 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005798 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012687 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 V8U A 1 601 1 V8U BLC . 
C 3 MG A 1 602 1 MG MG . 
D 4 HOH A 1 701 10 HOH HOH . 
D 4 HOH A 2 702 3 HOH HOH . 
D 4 HOH A 3 703 1 HOH HOH . 
D 4 HOH A 4 704 17 HOH HOH . 
D 4 HOH A 5 705 19 HOH HOH . 
D 4 HOH A 6 706 4 HOH HOH . 
D 4 HOH A 7 707 11 HOH HOH . 
D 4 HOH A 8 708 45 HOH HOH . 
D 4 HOH A 9 709 16 HOH HOH . 
D 4 HOH A 10 710 66 HOH HOH . 
D 4 HOH A 11 711 95 HOH HOH . 
D 4 HOH A 12 712 2 HOH HOH . 
D 4 HOH A 13 713 51 HOH HOH . 
D 4 HOH A 14 714 13 HOH HOH . 
D 4 HOH A 15 715 93 HOH HOH . 
D 4 HOH A 16 716 89 HOH HOH . 
D 4 HOH A 17 717 24 HOH HOH . 
D 4 HOH A 18 718 21 HOH HOH . 
D 4 HOH A 19 719 46 HOH HOH . 
D 4 HOH A 20 720 8 HOH HOH . 
D 4 HOH A 21 721 80 HOH HOH . 
D 4 HOH A 22 722 18 HOH HOH . 
D 4 HOH A 23 723 36 HOH HOH . 
D 4 HOH A 24 724 54 HOH HOH . 
D 4 HOH A 25 725 12 HOH HOH . 
D 4 HOH A 26 726 29 HOH HOH . 
D 4 HOH A 27 727 32 HOH HOH . 
D 4 HOH A 28 728 72 HOH HOH . 
D 4 HOH A 29 729 64 HOH HOH . 
D 4 HOH A 30 730 40 HOH HOH . 
D 4 HOH A 31 731 7 HOH HOH . 
D 4 HOH A 32 732 83 HOH HOH . 
D 4 HOH A 33 733 25 HOH HOH . 
D 4 HOH A 34 734 23 HOH HOH . 
D 4 HOH A 35 735 43 HOH HOH . 
D 4 HOH A 36 736 33 HOH HOH . 
D 4 HOH A 37 737 35 HOH HOH . 
D 4 HOH A 38 738 39 HOH HOH . 
D 4 HOH A 39 739 75 HOH HOH . 
D 4 HOH A 40 740 5 HOH HOH . 
D 4 HOH A 41 741 30 HOH HOH . 
D 4 HOH A 42 742 47 HOH HOH . 
D 4 HOH A 43 743 71 HOH HOH . 
D 4 HOH A 44 744 90 HOH HOH . 
D 4 HOH A 45 745 56 HOH HOH . 
D 4 HOH A 46 746 14 HOH HOH . 
D 4 HOH A 47 747 62 HOH HOH . 
D 4 HOH A 48 748 96 HOH HOH . 
D 4 HOH A 49 749 44 HOH HOH . 
D 4 HOH A 50 750 50 HOH HOH . 
D 4 HOH A 51 751 42 HOH HOH . 
D 4 HOH A 52 752 82 HOH HOH . 
D 4 HOH A 53 753 26 HOH HOH . 
D 4 HOH A 54 754 58 HOH HOH . 
D 4 HOH A 55 755 84 HOH HOH . 
D 4 HOH A 56 756 6 HOH HOH . 
D 4 HOH A 57 757 52 HOH HOH . 
D 4 HOH A 58 758 68 HOH HOH . 
D 4 HOH A 59 759 20 HOH HOH . 
D 4 HOH A 60 760 79 HOH HOH . 
D 4 HOH A 61 761 77 HOH HOH . 
D 4 HOH A 62 762 31 HOH HOH . 
D 4 HOH A 63 763 85 HOH HOH . 
D 4 HOH A 64 764 37 HOH HOH . 
D 4 HOH A 65 765 70 HOH HOH . 
D 4 HOH A 66 766 65 HOH HOH . 
D 4 HOH A 67 767 59 HOH HOH . 
D 4 HOH A 68 768 60 HOH HOH . 
D 4 HOH A 69 769 57 HOH HOH . 
D 4 HOH A 70 770 73 HOH HOH . 
D 4 HOH A 71 771 63 HOH HOH . 
D 4 HOH A 72 772 55 HOH HOH . 
D 4 HOH A 73 773 81 HOH HOH . 
D 4 HOH A 74 774 94 HOH HOH . 
D 4 HOH A 75 775 69 HOH HOH . 
D 4 HOH A 76 776 76 HOH HOH . 
D 4 HOH A 77 777 88 HOH HOH . 
D 4 HOH A 78 778 87 HOH HOH . 
D 4 HOH A 79 779 92 HOH HOH . 
D 4 HOH A 80 780 74 HOH HOH . 
D 4 HOH A 81 781 91 HOH HOH . 
D 4 HOH A 82 782 49 HOH HOH . 
D 4 HOH A 83 783 78 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2A V8U . . . B 2 31.74 18.878 20.55 1 56.51 ? O2A V8U 601 A 1 
HETATM 2 C C1A V8U . . . B 2 28.005 20.994 22.273 1 55.83 ? C1A V8U 601 A 1 
HETATM 3 C C2A V8U . . . B 2 29.421 21.272 21.908 1 55.26 ? C2A V8U 601 A 1 
HETATM 4 C C3A V8U . . . B 2 29.336 21.621 20.468 1 57.09 ? C3A V8U 601 A 1 
HETATM 5 C C4A V8U . . . B 2 27.879 21.473 20.164 1 59.85 ? C4A V8U 601 A 1 
HETATM 6 C C1B V8U . . . B 2 27.668 21.675 17.47 1 68.72 ? C1B V8U 601 A 1 
HETATM 7 C C2B V8U . . . B 2 26.846 22.166 16.324 1 70.78 ? C2B V8U 601 A 1 
HETATM 8 C C3B V8U . . . B 2 27.752 21.991 15.162 1 72.7 ? C3B V8U 601 A 1 
HETATM 9 C C4B V8U . . . B 2 28.983 21.424 15.767 1 74.35 ? C4B V8U 601 A 1 
HETATM 10 C C1C V8U . . . B 2 21.4 18.562 21.184 1 72.01 ? C1C V8U 601 A 1 
HETATM 11 C C2C V8U . . . B 2 20.174 18.033 21.838 1 72.43 ? C2C V8U 601 A 1 
HETATM 12 C C3C V8U . . . B 2 20.593 18.09 23.259 1 70.01 ? C3C V8U 601 A 1 
HETATM 13 C C4C V8U . . . B 2 22.004 18.591 23.247 1 68.28 ? C4C V8U 601 A 1 
HETATM 14 C C1D V8U . . . B 2 24.28 19.307 24.555 1 61.79 ? C1D V8U 601 A 1 
HETATM 15 C C2D V8U . . . B 2 24.937 19.177 25.883 1 58.97 ? C2D V8U 601 A 1 
HETATM 16 C C3D V8U . . . B 2 26.314 19.664 25.63 1 58.03 ? C3D V8U 601 A 1 
HETATM 17 C C4D V8U . . . B 2 26.332 20.014 24.178 1 56.86 ? C4D V8U 601 A 1 
HETATM 18 O O2D V8U . . . B 2 29.273 17.97 28.746 1 57.48 ? O2D V8U 601 A 1 
HETATM 19 C CGD V8U . . . B 2 29.357 18.809 27.823 1 57.11 ? CGD V8U 601 A 1 
HETATM 20 O O1D V8U . . . B 2 30.163 19.765 27.859 1 56.24 ? O1D V8U 601 A 1 
HETATM 21 C CBD V8U . . . B 2 28.449 18.663 26.622 1 57.01 ? CBD V8U 601 A 1 
HETATM 22 C CAD V8U . . . B 2 27.398 19.765 26.68 1 57.63 ? CAD V8U 601 A 1 
HETATM 23 C CMD V8U . . . B 2 24.37 18.697 27.194 1 60.15 ? CMD V8U 601 A 1 
HETATM 24 C CHD V8U . . . B 2 22.871 18.843 24.427 1 64.45 ? CHD V8U 601 A 1 
HETATM 25 C CAC V8U . . . B 2 19.649 17.594 24.312 1 71.37 ? CAC V8U 601 A 1 
HETATM 26 C CBC V8U . . . B 2 19.877 17.691 25.781 1 73.71 ? CBC V8U 601 A 1 
HETATM 27 C CMC V8U . . . B 2 18.857 17.59 21.26 1 72.72 ? CMC V8U 601 A 1 
HETATM 28 O OC V8U . . . B 2 21.443 18.705 19.909 1 73.24 ? OC V8U 601 A 1 
HETATM 29 N NC V8U . . . B 2 22.424 18.874 22.001 1 71.36 ? NC V8U 601 A 1 
HETATM 30 N ND V8U . . . B 2 25.124 19.774 23.597 1 59.24 ? ND V8U 601 A 1 
HETATM 31 C CHA V8U . . . B 2 27.602 20.575 23.64 1 55.46 ? CHA V8U 601 A 1 
HETATM 32 C CAA V8U . . . B 2 30.67 21.236 22.76 1 55.17 ? CAA V8U 601 A 1 
HETATM 33 C CBA V8U . . . B 2 31.465 19.943 22.66 1 54.3 ? CBA V8U 601 A 1 
HETATM 34 C CGA V8U . . . B 2 32.112 19.802 21.304 1 53.76 ? CGA V8U 601 A 1 
HETATM 35 O O1A V8U . . . B 2 33.002 20.615 20.974 1 51.04 ? O1A V8U 601 A 1 
HETATM 36 C CMA V8U . . . B 2 30.534 21.997 19.633 1 59.3 ? CMA V8U 601 A 1 
HETATM 37 N NA V8U . . . B 2 27.151 21.142 21.247 1 58.02 ? NA V8U 601 A 1 
HETATM 38 C CHB V8U . . . B 2 27.173 21.694 18.872 1 63.88 ? CHB V8U 601 A 1 
HETATM 39 C CMB V8U . . . B 2 25.449 22.725 16.322 1 70.8 ? CMB V8U 601 A 1 
HETATM 40 C CAB V8U . . . B 2 27.457 22.329 13.752 1 72.18 ? CAB V8U 601 A 1 
HETATM 41 C CBB V8U . . . B 2 28.341 22.161 12.788 1 73.95 ? CBB V8U 601 A 1 
HETATM 42 O OB V8U . . . B 2 30.038 21.118 15.103 1 78.54 ? OB V8U 601 A 1 
HETATM 43 N NB V8U . . . B 2 28.889 21.255 17.093 1 72.52 ? NB V8U 601 A 1 
#
_model_server_stats.io_time_ms              80 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           43 
#