data_8CO7 # _model_server_result.job_id qp9C4RCNFptQFpy5nvNfIQ _model_server_result.datetime_utc '2024-11-28 15:00:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8co7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":511}' # _entry.id 8CO7 # _exptl.entry_id 8CO7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8CO7 _cell.length_a 99.291 _cell.length_b 99.291 _cell.length_c 99.403 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CO7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 H N N ? 5 J N N ? 5 K N N ? 5 L N N ? 5 N N N ? 5 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 252 A ALA 252 1_555 A N CME 253 A CME 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C CME 253 A CME 253 1_555 A N THR 254 A THR 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 119 n n C1 C2 EDO sing 120 n n C1 H11 EDO sing 121 n n C1 H12 EDO sing 122 n n O1 HO1 EDO sing 123 n n C2 O2 EDO sing 124 n n C2 H21 EDO sing 125 n n C2 H22 EDO sing 126 n n O2 HO2 EDO sing 127 n n # _atom_sites.entry_id 8CO7 _atom_sites.fract_transf_matrix[1][1] 0.010071 _atom_sites.fract_transf_matrix[1][2] 0.005815 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011629 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01006 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 V9E A 1 501 501 V9E 906 . C 3 DMS A 1 502 601 DMS DMS . D 3 DMS A 1 503 701 DMS DMS . E 3 DMS A 1 504 801 DMS DMS . F 4 ACT A 1 505 901 ACT ACT . G 4 ACT A 1 506 1001 ACT ACT . H 5 EDO A 1 507 1101 EDO EDO . I 3 DMS A 1 508 1301 DMS DMS . J 5 EDO A 1 509 1401 EDO EDO . K 5 EDO A 1 510 1601 EDO EDO . L 5 EDO A 1 511 1701 EDO EDO . M 6 PG4 A 1 512 1901 PG4 PG4 . N 5 EDO A 1 513 2001 EDO EDO . O 4 ACT A 1 514 2201 ACT ACT . P 4 ACT A 1 515 2301 ACT ACT . Q 4 ACT A 1 516 2401 ACT ACT . R 5 EDO A 1 517 2501 EDO EDO . S 7 PGE A 1 518 2601 PGE PGE . T 8 CL A 1 519 1 CL CL . U 8 CL A 1 520 2 CL CL . V 9 HOH A 1 601 95 HOH HOH . V 9 HOH A 2 602 10 HOH HOH . V 9 HOH A 3 603 250 HOH HOH . V 9 HOH A 4 604 217 HOH HOH . V 9 HOH A 5 605 178 HOH HOH . V 9 HOH A 6 606 59 HOH HOH . V 9 HOH A 7 607 168 HOH HOH . V 9 HOH A 8 608 231 HOH HOH . V 9 HOH A 9 609 161 HOH HOH . V 9 HOH A 10 610 175 HOH HOH . V 9 HOH A 11 611 107 HOH HOH . V 9 HOH A 12 612 143 HOH HOH . V 9 HOH A 13 613 22 HOH HOH . V 9 HOH A 14 614 61 HOH HOH . V 9 HOH A 15 615 233 HOH HOH . V 9 HOH A 16 616 182 HOH HOH . V 9 HOH A 17 617 249 HOH HOH . V 9 HOH A 18 618 91 HOH HOH . V 9 HOH A 19 619 20 HOH HOH . V 9 HOH A 20 620 252 HOH HOH . V 9 HOH A 21 621 140 HOH HOH . V 9 HOH A 22 622 11 HOH HOH . V 9 HOH A 23 623 47 HOH HOH . V 9 HOH A 24 624 188 HOH HOH . V 9 HOH A 25 625 30 HOH HOH . V 9 HOH A 26 626 118 HOH HOH . V 9 HOH A 27 627 40 HOH HOH . V 9 HOH A 28 628 122 HOH HOH . V 9 HOH A 29 629 70 HOH HOH . V 9 HOH A 30 630 88 HOH HOH . V 9 HOH A 31 631 26 HOH HOH . V 9 HOH A 32 632 112 HOH HOH . V 9 HOH A 33 633 25 HOH HOH . V 9 HOH A 34 634 159 HOH HOH . V 9 HOH A 35 635 43 HOH HOH . V 9 HOH A 36 636 98 HOH HOH . V 9 HOH A 37 637 85 HOH HOH . V 9 HOH A 38 638 50 HOH HOH . V 9 HOH A 39 639 101 HOH HOH . V 9 HOH A 40 640 109 HOH HOH . V 9 HOH A 41 641 23 HOH HOH . V 9 HOH A 42 642 7 HOH HOH . V 9 HOH A 43 643 35 HOH HOH . V 9 HOH A 44 644 18 HOH HOH . V 9 HOH A 45 645 89 HOH HOH . V 9 HOH A 46 646 21 HOH HOH . V 9 HOH A 47 647 6 HOH HOH . V 9 HOH A 48 648 12 HOH HOH . V 9 HOH A 49 649 63 HOH HOH . V 9 HOH A 50 650 44 HOH HOH . V 9 HOH A 51 651 14 HOH HOH . V 9 HOH A 52 652 33 HOH HOH . V 9 HOH A 53 653 24 HOH HOH . V 9 HOH A 54 654 124 HOH HOH . V 9 HOH A 55 655 37 HOH HOH . V 9 HOH A 56 656 129 HOH HOH . V 9 HOH A 57 657 69 HOH HOH . V 9 HOH A 58 658 183 HOH HOH . V 9 HOH A 59 659 55 HOH HOH . V 9 HOH A 60 660 60 HOH HOH . V 9 HOH A 61 661 79 HOH HOH . V 9 HOH A 62 662 19 HOH HOH . V 9 HOH A 63 663 197 HOH HOH . V 9 HOH A 64 664 62 HOH HOH . V 9 HOH A 65 665 92 HOH HOH . V 9 HOH A 66 666 46 HOH HOH . V 9 HOH A 67 667 121 HOH HOH . V 9 HOH A 68 668 120 HOH HOH . V 9 HOH A 69 669 8 HOH HOH . V 9 HOH A 70 670 228 HOH HOH . V 9 HOH A 71 671 29 HOH HOH . V 9 HOH A 72 672 82 HOH HOH . V 9 HOH A 73 673 86 HOH HOH . V 9 HOH A 74 674 139 HOH HOH . V 9 HOH A 75 675 164 HOH HOH . V 9 HOH A 76 676 15 HOH HOH . V 9 HOH A 77 677 199 HOH HOH . V 9 HOH A 78 678 52 HOH HOH . V 9 HOH A 79 679 185 HOH HOH . V 9 HOH A 80 680 56 HOH HOH . V 9 HOH A 81 681 9 HOH HOH . V 9 HOH A 82 682 39 HOH HOH . V 9 HOH A 83 683 224 HOH HOH . V 9 HOH A 84 684 201 HOH HOH . V 9 HOH A 85 685 27 HOH HOH . V 9 HOH A 86 686 106 HOH HOH . V 9 HOH A 87 687 113 HOH HOH . V 9 HOH A 88 688 67 HOH HOH . V 9 HOH A 89 689 72 HOH HOH . V 9 HOH A 90 690 77 HOH HOH . V 9 HOH A 91 691 189 HOH HOH . V 9 HOH A 92 692 5 HOH HOH . V 9 HOH A 93 693 66 HOH HOH . V 9 HOH A 94 694 90 HOH HOH . V 9 HOH A 95 695 73 HOH HOH . V 9 HOH A 96 696 31 HOH HOH . V 9 HOH A 97 697 212 HOH HOH . V 9 HOH A 98 698 53 HOH HOH . V 9 HOH A 99 699 36 HOH HOH . V 9 HOH A 100 700 108 HOH HOH . V 9 HOH A 101 701 116 HOH HOH . V 9 HOH A 102 702 81 HOH HOH . V 9 HOH A 103 703 206 HOH HOH . V 9 HOH A 104 704 145 HOH HOH . V 9 HOH A 105 705 76 HOH HOH . V 9 HOH A 106 706 149 HOH HOH . V 9 HOH A 107 707 49 HOH HOH . V 9 HOH A 108 708 96 HOH HOH . V 9 HOH A 109 709 87 HOH HOH . V 9 HOH A 110 710 102 HOH HOH . V 9 HOH A 111 711 130 HOH HOH . V 9 HOH A 112 712 162 HOH HOH . V 9 HOH A 113 713 246 HOH HOH . V 9 HOH A 114 714 42 HOH HOH . V 9 HOH A 115 715 205 HOH HOH . V 9 HOH A 116 716 3 HOH HOH . V 9 HOH A 117 717 100 HOH HOH . V 9 HOH A 118 718 237 HOH HOH . V 9 HOH A 119 719 213 HOH HOH . V 9 HOH A 120 720 13 HOH HOH . V 9 HOH A 121 721 220 HOH HOH . V 9 HOH A 122 722 131 HOH HOH . V 9 HOH A 123 723 225 HOH HOH . V 9 HOH A 124 724 209 HOH HOH . V 9 HOH A 125 725 177 HOH HOH . V 9 HOH A 126 726 169 HOH HOH . V 9 HOH A 127 727 48 HOH HOH . V 9 HOH A 128 728 68 HOH HOH . V 9 HOH A 129 729 158 HOH HOH . V 9 HOH A 130 730 34 HOH HOH . V 9 HOH A 131 731 202 HOH HOH . V 9 HOH A 132 732 173 HOH HOH . V 9 HOH A 133 733 117 HOH HOH . V 9 HOH A 134 734 193 HOH HOH . V 9 HOH A 135 735 167 HOH HOH . V 9 HOH A 136 736 83 HOH HOH . V 9 HOH A 137 737 156 HOH HOH . V 9 HOH A 138 738 51 HOH HOH . V 9 HOH A 139 739 235 HOH HOH . V 9 HOH A 140 740 187 HOH HOH . V 9 HOH A 141 741 155 HOH HOH . V 9 HOH A 142 742 150 HOH HOH . V 9 HOH A 143 743 210 HOH HOH . V 9 HOH A 144 744 65 HOH HOH . V 9 HOH A 145 745 74 HOH HOH . V 9 HOH A 146 746 136 HOH HOH . V 9 HOH A 147 747 236 HOH HOH . V 9 HOH A 148 748 147 HOH HOH . V 9 HOH A 149 749 151 HOH HOH . V 9 HOH A 150 750 200 HOH HOH . V 9 HOH A 151 751 78 HOH HOH . V 9 HOH A 152 752 115 HOH HOH . V 9 HOH A 153 753 104 HOH HOH . V 9 HOH A 154 754 110 HOH HOH . V 9 HOH A 155 755 103 HOH HOH . V 9 HOH A 156 756 152 HOH HOH . V 9 HOH A 157 757 126 HOH HOH . V 9 HOH A 158 758 179 HOH HOH . V 9 HOH A 159 759 226 HOH HOH . V 9 HOH A 160 760 203 HOH HOH . V 9 HOH A 161 761 186 HOH HOH . V 9 HOH A 162 762 111 HOH HOH . V 9 HOH A 163 763 184 HOH HOH . V 9 HOH A 164 764 245 HOH HOH . V 9 HOH A 165 765 232 HOH HOH . V 9 HOH A 166 766 242 HOH HOH . V 9 HOH A 167 767 195 HOH HOH . V 9 HOH A 168 768 97 HOH HOH . V 9 HOH A 169 769 222 HOH HOH . V 9 HOH A 170 770 216 HOH HOH . V 9 HOH A 171 771 165 HOH HOH . V 9 HOH A 172 772 194 HOH HOH . V 9 HOH A 173 773 215 HOH HOH . V 9 HOH A 174 774 204 HOH HOH . V 9 HOH A 175 775 211 HOH HOH . V 9 HOH A 176 776 254 HOH HOH . V 9 HOH A 177 777 219 HOH HOH . V 9 HOH A 178 778 227 HOH HOH . V 9 HOH A 179 779 251 HOH HOH . V 9 HOH A 180 780 218 HOH HOH . V 9 HOH A 181 781 229 HOH HOH . V 9 HOH A 182 782 239 HOH HOH . V 9 HOH A 183 783 243 HOH HOH . V 9 HOH A 184 784 99 HOH HOH . V 9 HOH A 185 785 41 HOH HOH . V 9 HOH A 186 786 198 HOH HOH . V 9 HOH A 187 787 119 HOH HOH . V 9 HOH A 188 788 230 HOH HOH . V 9 HOH A 189 789 190 HOH HOH . V 9 HOH A 190 790 192 HOH HOH . V 9 HOH A 191 791 238 HOH HOH . V 9 HOH A 192 792 240 HOH HOH . V 9 HOH A 193 793 207 HOH HOH . V 9 HOH A 194 794 138 HOH HOH . V 9 HOH A 195 795 134 HOH HOH . V 9 HOH A 196 796 208 HOH HOH . V 9 HOH A 197 797 247 HOH HOH . V 9 HOH A 198 798 105 HOH HOH . V 9 HOH A 199 799 234 HOH HOH . V 9 HOH A 200 800 125 HOH HOH . V 9 HOH A 201 801 223 HOH HOH . V 9 HOH A 202 802 160 HOH HOH . V 9 HOH A 203 803 221 HOH HOH . V 9 HOH A 204 804 148 HOH HOH . V 9 HOH A 205 805 244 HOH HOH . V 9 HOH A 206 806 214 HOH HOH . V 9 HOH A 207 807 241 HOH HOH . V 9 HOH A 208 808 253 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . L 5 -6.115 -40.345 12.223 1 63.46 ? C1 EDO 511 A 1 HETATM 2 O O1 EDO . . . L 5 -7.422 -40.907 12.411 1 64.84 ? O1 EDO 511 A 1 HETATM 3 C C2 EDO . . . L 5 -6.133 -39.482 10.968 1 61.86 ? C2 EDO 511 A 1 HETATM 4 O O2 EDO . . . L 5 -5.448 -38.255 11.232 1 61.24 ? O2 EDO 511 A 1 HETATM 5 H H11 EDO . . . L 5 -5.838 -39.742 13.09 1 76.16 ? H11 EDO 511 A 1 HETATM 6 H H12 EDO . . . L 5 -5.376 -41.142 12.119 1 76.16 ? H12 EDO 511 A 1 HETATM 7 H HO1 EDO . . . L 5 -7.379 -41.606 13.077 1 77.81 ? HO1 EDO 511 A 1 HETATM 8 H H21 EDO . . . L 5 -7.164 -39.276 10.673 1 74.24 ? H21 EDO 511 A 1 HETATM 9 H H22 EDO . . . L 5 -5.647 -40.01 10.146 1 74.24 ? H22 EDO 511 A 1 HETATM 10 H HO2 EDO . . . L 5 -5.438 -37.713 10.432 1 73.49 ? HO2 EDO 511 A 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 885 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #