data_8COP
#
_model_server_result.job_id            WTcoHx23QkwkFYVHtnhkCQ 
_model_server_result.datetime_utc      '2024-11-30 20:41:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cop 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    8COP 
#
_exptl.entry_id    8COP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              745.421 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8COP 
_cell.length_a            61.029 
_cell.length_b            71.927 
_cell.length_c            72.375 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8COP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 40 A HIS 38 1_555 G CO CO . A CO 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? 
metalc ? metalc2 A NE2 HIS 159 A HIS 157 1_555 K CO CO . B CO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? 
metalc ? metalc3 G CO CO . A CO 205 1_555 L O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? 
metalc ? metalc4 G CO CO . A CO 205 1_555 L O HOH . A HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc5 G CO CO . A CO 205 1_555 B NE2 HIS 159 B HIS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc6 B NE2 HIS 40 B HIS 38 1_555 K CO CO . B CO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc7 K CO CO . B CO 204 1_555 M O HOH . B HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc8 K CO CO . B CO 204 1_555 M O HOH . B HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? 
#
_chem_comp.formula           'C21 H30 N7 O17 P3' 
_chem_comp.formula_weight    745.421 
_chem_comp.id                NDP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NDP doub 237 n n 
PA O2A NDP sing 238 n n 
PA O5B NDP sing 239 n n 
PA O3 NDP sing 240 n n 
O2A HOA2 NDP sing 241 n n 
O5B C5B NDP sing 242 n n 
C5B C4B NDP sing 243 n n 
C5B H51A NDP sing 244 n n 
C5B H52A NDP sing 245 n n 
C4B O4B NDP sing 246 n n 
C4B C3B NDP sing 247 n n 
C4B H4B NDP sing 248 n n 
O4B C1B NDP sing 249 n n 
C3B O3B NDP sing 250 n n 
C3B C2B NDP sing 251 n n 
C3B H3B NDP sing 252 n n 
O3B HO3A NDP sing 253 n n 
C2B O2B NDP sing 254 n n 
C2B C1B NDP sing 255 n n 
C2B H2B NDP sing 256 n n 
O2B P2B NDP sing 257 n n 
C1B N9A NDP sing 258 n n 
C1B H1B NDP sing 259 n n 
N9A C8A NDP sing 260 n y 
N9A C4A NDP sing 261 n y 
C8A N7A NDP doub 262 n y 
C8A H8A NDP sing 263 n n 
N7A C5A NDP sing 264 n y 
C5A C6A NDP sing 265 n y 
C5A C4A NDP doub 266 n y 
C6A N6A NDP sing 267 n n 
C6A N1A NDP doub 268 n y 
N6A H61A NDP sing 269 n n 
N6A H62A NDP sing 270 n n 
N1A C2A NDP sing 271 n y 
C2A N3A NDP doub 272 n y 
C2A H2A NDP sing 273 n n 
N3A C4A NDP sing 274 n y 
O3 PN NDP sing 275 n n 
PN O1N NDP doub 276 n n 
PN O2N NDP sing 277 n n 
PN O5D NDP sing 278 n n 
O2N H21N NDP sing 279 n n 
O5D C5D NDP sing 280 n n 
C5D C4D NDP sing 281 n n 
C5D H51N NDP sing 282 n n 
C5D H52N NDP sing 283 n n 
C4D O4D NDP sing 284 n n 
C4D C3D NDP sing 285 n n 
C4D H4D NDP sing 286 n n 
O4D C1D NDP sing 287 n n 
C3D O3D NDP sing 288 n n 
C3D C2D NDP sing 289 n n 
C3D H3D NDP sing 290 n n 
O3D HO3N NDP sing 291 n n 
C2D O2D NDP sing 292 n n 
C2D C1D NDP sing 293 n n 
C2D H2D NDP sing 294 n n 
O2D HO2N NDP sing 295 n n 
C1D N1N NDP sing 296 n n 
C1D H1D NDP sing 297 n n 
N1N C2N NDP sing 298 n n 
N1N C6N NDP sing 299 n n 
C2N C3N NDP doub 300 n n 
C2N H2N NDP sing 301 n n 
C3N C7N NDP sing 302 n n 
C3N C4N NDP sing 303 n n 
C7N O7N NDP doub 304 n n 
C7N N7N NDP sing 305 n n 
N7N H71N NDP sing 306 n n 
N7N H72N NDP sing 307 n n 
C4N C5N NDP sing 308 n n 
C4N H41N NDP sing 309 n n 
C4N H42N NDP sing 310 n n 
C5N C6N NDP doub 311 n n 
C5N H5N NDP sing 312 n n 
C6N H6N NDP sing 313 n n 
P2B O1X NDP doub 314 n n 
P2B O2X NDP sing 315 n n 
P2B O3X NDP sing 316 n n 
O2X HOP2 NDP sing 317 n n 
O3X HOP3 NDP sing 318 n n 
#
_atom_sites.entry_id                     8COP 
_atom_sites.fract_transf_matrix[1][1]    0.016386 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013903 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013817 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 201 204 NDP NDP . 
D 3 PO4 A 1 202 205 PO4 PO4 . 
E 3 PO4 A 1 203 206 PO4 PO4 . 
F 4 VCI A 1 204 301 VCI S29 . 
G 5 CO A 1 205 1 CO CO . 
H 2 NDP B 1 201 204 NDP NDP . 
I 3 PO4 B 1 202 205 PO4 PO4 . 
J 4 VCI B 1 203 301 VCI S29 . 
K 5 CO B 1 204 2 CO CO . 
L 6 HOH A 1 301 6 HOH HOH . 
L 6 HOH A 2 302 4 HOH HOH . 
L 6 HOH A 3 303 2 HOH HOH . 
L 6 HOH A 4 304 40 HOH HOH . 
L 6 HOH A 5 305 34 HOH HOH . 
L 6 HOH A 6 306 24 HOH HOH . 
L 6 HOH A 7 307 19 HOH HOH . 
L 6 HOH A 8 308 8 HOH HOH . 
L 6 HOH A 9 309 9 HOH HOH . 
L 6 HOH A 10 310 31 HOH HOH . 
L 6 HOH A 11 311 43 HOH HOH . 
L 6 HOH A 12 312 12 HOH HOH . 
L 6 HOH A 13 313 3 HOH HOH . 
L 6 HOH A 14 314 16 HOH HOH . 
L 6 HOH A 15 315 20 HOH HOH . 
L 6 HOH A 16 316 48 HOH HOH . 
L 6 HOH A 17 317 13 HOH HOH . 
L 6 HOH A 18 318 1 HOH HOH . 
L 6 HOH A 19 319 26 HOH HOH . 
L 6 HOH A 20 320 49 HOH HOH . 
L 6 HOH A 21 321 39 HOH HOH . 
L 6 HOH A 22 322 44 HOH HOH . 
L 6 HOH A 23 323 45 HOH HOH . 
L 6 HOH A 24 324 46 HOH HOH . 
M 6 HOH B 1 301 5 HOH HOH . 
M 6 HOH B 2 302 51 HOH HOH . 
M 6 HOH B 3 303 17 HOH HOH . 
M 6 HOH B 4 304 37 HOH HOH . 
M 6 HOH B 5 305 30 HOH HOH . 
M 6 HOH B 6 306 55 HOH HOH . 
M 6 HOH B 7 307 28 HOH HOH . 
M 6 HOH B 8 308 27 HOH HOH . 
M 6 HOH B 9 309 54 HOH HOH . 
M 6 HOH B 10 310 14 HOH HOH . 
M 6 HOH B 11 311 35 HOH HOH . 
M 6 HOH B 12 312 23 HOH HOH . 
M 6 HOH B 13 313 50 HOH HOH . 
M 6 HOH B 14 314 41 HOH HOH . 
M 6 HOH B 15 315 11 HOH HOH . 
M 6 HOH B 16 316 33 HOH HOH . 
M 6 HOH B 17 317 18 HOH HOH . 
M 6 HOH B 18 318 10 HOH HOH . 
M 6 HOH B 19 319 52 HOH HOH . 
M 6 HOH B 20 320 22 HOH HOH . 
M 6 HOH B 21 321 21 HOH HOH . 
M 6 HOH B 22 322 36 HOH HOH . 
M 6 HOH B 23 323 7 HOH HOH . 
M 6 HOH B 24 324 25 HOH HOH . 
M 6 HOH B 25 325 38 HOH HOH . 
M 6 HOH B 26 326 15 HOH HOH . 
M 6 HOH B 27 327 42 HOH HOH . 
M 6 HOH B 28 328 29 HOH HOH . 
M 6 HOH B 29 329 53 HOH HOH . 
M 6 HOH B 30 330 56 HOH HOH . 
M 6 HOH B 31 331 47 HOH HOH . 
M 6 HOH B 32 332 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NDP . . . C 2 0.026 6.592 19.116 1 30.59 ? PA NDP 201 A 1 
HETATM 2 O O1A NDP . . . C 2 0.468 5.647 18.064 1 32.38 ? O1A NDP 201 A 1 
HETATM 3 O O2A NDP . . . C 2 0.879 6.918 20.297 1 28.36 ? O2A NDP 201 A 1 
HETATM 4 O O5B NDP . . . C 2 -0.393 8.012 18.457 1 32.91 ? O5B NDP 201 A 1 
HETATM 5 C C5B NDP . . . C 2 -1.426 7.719 17.579 1 30.95 ? C5B NDP 201 A 1 
HETATM 6 C C4B NDP . . . C 2 -1.626 8.958 16.746 1 32.03 ? C4B NDP 201 A 1 
HETATM 7 O O4B NDP . . . C 2 -0.729 8.947 15.671 1 37.03 ? O4B NDP 201 A 1 
HETATM 8 C C3B NDP . . . C 2 -3.027 8.986 16.133 1 38.43 ? C3B NDP 201 A 1 
HETATM 9 O O3B NDP . . . C 2 -3.939 9.44 17.093 1 40.61 ? O3B NDP 201 A 1 
HETATM 10 C C2B NDP . . . C 2 -2.829 10.082 15.054 1 30.23 ? C2B NDP 201 A 1 
HETATM 11 O O2B NDP . . . C 2 -2.826 11.305 15.547 1 31.45 ? O2B NDP 201 A 1 
HETATM 12 C C1B NDP . . . C 2 -1.313 9.796 14.658 1 33.95 ? C1B NDP 201 A 1 
HETATM 13 N N9A NDP . . . C 2 -1.122 9.157 13.356 1 32.41 ? N9A NDP 201 A 1 
HETATM 14 C C8A NDP . . . C 2 -1.186 7.807 13.042 1 31.99 ? C8A NDP 201 A 1 
HETATM 15 N N7A NDP . . . C 2 -0.945 7.557 11.74 1 34.37 ? N7A NDP 201 A 1 
HETATM 16 C C5A NDP . . . C 2 -0.699 8.818 11.191 1 31.33 ? C5A NDP 201 A 1 
HETATM 17 C C6A NDP . . . C 2 -0.389 9.227 9.898 1 33.44 ? C6A NDP 201 A 1 
HETATM 18 N N6A NDP . . . C 2 -0.278 8.303 8.886 1 42.57 ? N6A NDP 201 A 1 
HETATM 19 N N1A NDP . . . C 2 -0.192 10.523 9.586 1 34.58 ? N1A NDP 201 A 1 
HETATM 20 C C2A NDP . . . C 2 -0.325 11.395 10.628 1 33.56 ? C2A NDP 201 A 1 
HETATM 21 N N3A NDP . . . C 2 -0.602 11.157 11.916 1 36.22 ? N3A NDP 201 A 1 
HETATM 22 C C4A NDP . . . C 2 -0.8 9.825 12.176 1 31.46 ? C4A NDP 201 A 1 
HETATM 23 O O3 NDP . . . C 2 -1.379 5.948 19.633 1 26.86 ? O3 NDP 201 A 1 
HETATM 24 P PN NDP . . . C 2 -1.266 4.552 20.369 1 30.45 ? PN NDP 201 A 1 
HETATM 25 O O1N NDP . . . C 2 -1.031 3.475 19.386 1 25.76 ? O1N NDP 201 A 1 
HETATM 26 O O2N NDP . . . C 2 -2.365 4.402 21.393 1 35.56 ? O2N NDP 201 A 1 
HETATM 27 O O5D NDP . . . C 2 0.127 4.474 21.385 1 35.16 ? O5D NDP 201 A 1 
HETATM 28 C C5D NDP . . . C 2 -0.202 5.088 22.585 1 30.68 ? C5D NDP 201 A 1 
HETATM 29 C C4D NDP . . . C 2 0.005 4.094 23.709 1 28.6 ? C4D NDP 201 A 1 
HETATM 30 O O4D NDP . . . C 2 1.34 3.569 23.682 1 24.84 ? O4D NDP 201 A 1 
HETATM 31 C C3D NDP . . . C 2 -0.203 4.811 25.082 1 27.68 ? C3D NDP 201 A 1 
HETATM 32 O O3D NDP . . . C 2 -0.819 3.89 25.891 1 30.98 ? O3D NDP 201 A 1 
HETATM 33 C C2D NDP . . . C 2 1.195 5.006 25.563 1 28.48 ? C2D NDP 201 A 1 
HETATM 34 O O2D NDP . . . C 2 1.265 4.959 26.95 1 30.46 ? O2D NDP 201 A 1 
HETATM 35 C C1D NDP . . . C 2 1.862 3.698 24.974 1 29.63 ? C1D NDP 201 A 1 
HETATM 36 N N1N NDP . . . C 2 3.348 3.848 24.873 1 31.19 ? N1N NDP 201 A 1 
HETATM 37 C C2N NDP . . . C 2 4.187 2.845 25.314 1 30.45 ? C2N NDP 201 A 1 
HETATM 38 C C3N NDP . . . C 2 5.531 2.912 25.061 1 29.57 ? C3N NDP 201 A 1 
HETATM 39 C C7N NDP . . . C 2 6.36 1.819 25.571 1 28.13 ? C7N NDP 201 A 1 
HETATM 40 O O7N NDP . . . C 2 5.965 0.935 26.347 1 31.63 ? O7N NDP 201 A 1 
HETATM 41 N N7N NDP . . . C 2 7.669 1.771 25.14 1 23.59 ? N7N NDP 201 A 1 
HETATM 42 C C4N NDP . . . C 2 6.133 4.033 24.311 1 29.97 ? C4N NDP 201 A 1 
HETATM 43 C C5N NDP . . . C 2 5.189 5.12 24.066 1 30.49 ? C5N NDP 201 A 1 
HETATM 44 C C6N NDP . . . C 2 3.894 5.009 24.332 1 29.78 ? C6N NDP 201 A 1 
HETATM 45 P P2B NDP . . . C 2 -4.324 12.325 15.399 1 37.13 ? P2B NDP 201 A 1 
HETATM 46 O O1X NDP . . . C 2 -5.169 11.536 16.348 1 32.35 ? O1X NDP 201 A 1 
HETATM 47 O O2X NDP . . . C 2 -3.904 13.733 15.832 1 33.92 ? O2X NDP 201 A 1 
HETATM 48 O O3X NDP . . . C 2 -4.528 12.098 13.936 1 47.27 ? O3X NDP 201 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           48 
#