data_8COP # _model_server_result.job_id C-hLKmYkQV3gld_qp0DkJA _model_server_result.datetime_utc '2024-11-02 17:26:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cop # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":201}' # _entry.id 8COP # _exptl.entry_id 8COP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8COP _cell.length_a 61.029 _cell.length_b 71.927 _cell.length_c 72.375 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8COP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 40 A HIS 38 1_555 G CO CO . A CO 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? metalc ? metalc2 A NE2 HIS 159 A HIS 157 1_555 K CO CO . B CO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.787 ? metalc ? metalc3 G CO CO . A CO 205 1_555 L O HOH . A HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? metalc ? metalc4 G CO CO . A CO 205 1_555 L O HOH . A HOH 321 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc5 G CO CO . A CO 205 1_555 B NE2 HIS 159 B HIS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc6 B NE2 HIS 40 B HIS 38 1_555 K CO CO . B CO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc7 K CO CO . B CO 204 1_555 M O HOH . B HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc8 K CO CO . B CO 204 1_555 M O HOH . B HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.858 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 8COP _atom_sites.fract_transf_matrix[1][1] 0.016386 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013903 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013817 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 201 204 NDP NDP . D 3 PO4 A 1 202 205 PO4 PO4 . E 3 PO4 A 1 203 206 PO4 PO4 . F 4 VCI A 1 204 301 VCI S29 . G 5 CO A 1 205 1 CO CO . H 2 NDP B 1 201 204 NDP NDP . I 3 PO4 B 1 202 205 PO4 PO4 . J 4 VCI B 1 203 301 VCI S29 . K 5 CO B 1 204 2 CO CO . L 6 HOH A 1 301 6 HOH HOH . L 6 HOH A 2 302 4 HOH HOH . L 6 HOH A 3 303 2 HOH HOH . L 6 HOH A 4 304 40 HOH HOH . L 6 HOH A 5 305 34 HOH HOH . L 6 HOH A 6 306 24 HOH HOH . L 6 HOH A 7 307 19 HOH HOH . L 6 HOH A 8 308 8 HOH HOH . L 6 HOH A 9 309 9 HOH HOH . L 6 HOH A 10 310 31 HOH HOH . L 6 HOH A 11 311 43 HOH HOH . L 6 HOH A 12 312 12 HOH HOH . L 6 HOH A 13 313 3 HOH HOH . L 6 HOH A 14 314 16 HOH HOH . L 6 HOH A 15 315 20 HOH HOH . L 6 HOH A 16 316 48 HOH HOH . L 6 HOH A 17 317 13 HOH HOH . L 6 HOH A 18 318 1 HOH HOH . L 6 HOH A 19 319 26 HOH HOH . L 6 HOH A 20 320 49 HOH HOH . L 6 HOH A 21 321 39 HOH HOH . L 6 HOH A 22 322 44 HOH HOH . L 6 HOH A 23 323 45 HOH HOH . L 6 HOH A 24 324 46 HOH HOH . M 6 HOH B 1 301 5 HOH HOH . M 6 HOH B 2 302 51 HOH HOH . M 6 HOH B 3 303 17 HOH HOH . M 6 HOH B 4 304 37 HOH HOH . M 6 HOH B 5 305 30 HOH HOH . M 6 HOH B 6 306 55 HOH HOH . M 6 HOH B 7 307 28 HOH HOH . M 6 HOH B 8 308 27 HOH HOH . M 6 HOH B 9 309 54 HOH HOH . M 6 HOH B 10 310 14 HOH HOH . M 6 HOH B 11 311 35 HOH HOH . M 6 HOH B 12 312 23 HOH HOH . M 6 HOH B 13 313 50 HOH HOH . M 6 HOH B 14 314 41 HOH HOH . M 6 HOH B 15 315 11 HOH HOH . M 6 HOH B 16 316 33 HOH HOH . M 6 HOH B 17 317 18 HOH HOH . M 6 HOH B 18 318 10 HOH HOH . M 6 HOH B 19 319 52 HOH HOH . M 6 HOH B 20 320 22 HOH HOH . M 6 HOH B 21 321 21 HOH HOH . M 6 HOH B 22 322 36 HOH HOH . M 6 HOH B 23 323 7 HOH HOH . M 6 HOH B 24 324 25 HOH HOH . M 6 HOH B 25 325 38 HOH HOH . M 6 HOH B 26 326 15 HOH HOH . M 6 HOH B 27 327 42 HOH HOH . M 6 HOH B 28 328 29 HOH HOH . M 6 HOH B 29 329 53 HOH HOH . M 6 HOH B 30 330 56 HOH HOH . M 6 HOH B 31 331 47 HOH HOH . M 6 HOH B 32 332 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . H 2 46.017 -0.656 10.617 1 35.24 ? PA NDP 201 B 1 HETATM 2 O O1A NDP . . . H 2 45.577 0.193 11.753 1 33.84 ? O1A NDP 201 B 1 HETATM 3 O O2A NDP . . . H 2 45.138 -1.726 10.036 1 29.82 ? O2A NDP 201 B 1 HETATM 4 O O5B NDP . . . H 2 46.524 0.289 9.368 1 37.27 ? O5B NDP 201 B 1 HETATM 5 C C5B NDP . . . H 2 47.454 1.209 9.889 1 31.04 ? C5B NDP 201 B 1 HETATM 6 C C4B NDP . . . H 2 47.691 2.175 8.746 1 33.33 ? C4B NDP 201 B 1 HETATM 7 O O4B NDP . . . H 2 46.782 3.223 8.823 1 39.22 ? O4B NDP 201 B 1 HETATM 8 C C3B NDP . . . H 2 49.066 2.798 8.779 1 36.26 ? C3B NDP 201 B 1 HETATM 9 O O3B NDP . . . H 2 49.938 1.898 8.248 1 44.48 ? O3B NDP 201 B 1 HETATM 10 C C2B NDP . . . H 2 48.832 3.897 7.733 1 35.26 ? C2B NDP 201 B 1 HETATM 11 O O2B NDP . . . H 2 48.784 3.433 6.505 1 34.98 ? O2B NDP 201 B 1 HETATM 12 C C1B NDP . . . H 2 47.342 4.302 8.1 1 34.07 ? C1B NDP 201 B 1 HETATM 13 N N9A NDP . . . H 2 47.231 5.489 8.936 1 34.71 ? N9A NDP 201 B 1 HETATM 14 C C8A NDP . . . H 2 47.362 5.596 10.323 1 36.99 ? C8A NDP 201 B 1 HETATM 15 N N7A NDP . . . H 2 47.192 6.871 10.776 1 36.54 ? N7A NDP 201 B 1 HETATM 16 C C5A NDP . . . H 2 46.924 7.607 9.618 1 33.94 ? C5A NDP 201 B 1 HETATM 17 C C6A NDP . . . H 2 46.662 8.967 9.409 1 36.27 ? C6A NDP 201 B 1 HETATM 18 N N6A NDP . . . H 2 46.626 9.865 10.463 1 40.05 ? N6A NDP 201 B 1 HETATM 19 N N1A NDP . . . H 2 46.439 9.45 8.174 1 32.02 ? N1A NDP 201 B 1 HETATM 20 C C2A NDP . . . H 2 46.489 8.526 7.186 1 37.42 ? C2A NDP 201 B 1 HETATM 21 N N3A NDP . . . H 2 46.717 7.213 7.213 1 36.16 ? N3A NDP 201 B 1 HETATM 22 C C4A NDP . . . H 2 46.94 6.764 8.468 1 36.35 ? C4A NDP 201 B 1 HETATM 23 O O3 NDP . . . H 2 47.422 -1.312 11.186 1 35.21 ? O3 NDP 201 B 1 HETATM 24 P PN NDP . . . H 2 47.244 -2.267 12.428 1 33.53 ? PN NDP 201 B 1 HETATM 25 O O1N NDP . . . H 2 46.872 -1.423 13.579 1 29.04 ? O1N NDP 201 B 1 HETATM 26 O O2N NDP . . . H 2 48.333 -3.314 12.486 1 33.53 ? O2N NDP 201 B 1 HETATM 27 O O5D NDP . . . H 2 45.842 -3.307 12.288 1 36.45 ? O5D NDP 201 B 1 HETATM 28 C C5D NDP . . . H 2 46.248 -4.483 11.705 1 29.96 ? C5D NDP 201 B 1 HETATM 29 C C4D NDP . . . H 2 45.706 -5.666 12.519 1 29.51 ? C4D NDP 201 B 1 HETATM 30 O O4D NDP . . . H 2 44.333 -5.487 12.935 1 29.65 ? O4D NDP 201 B 1 HETATM 31 C C3D NDP . . . H 2 45.733 -6.954 11.611 1 31.79 ? C3D NDP 201 B 1 HETATM 32 O O3D NDP . . . H 2 46.386 -7.977 12.327 1 33.78 ? O3D NDP 201 B 1 HETATM 33 C C2D NDP . . . H 2 44.23 -7.251 11.403 1 27.02 ? C2D NDP 201 B 1 HETATM 34 O O2D NDP . . . H 2 43.908 -8.592 11.308 1 25.16 ? O2D NDP 201 B 1 HETATM 35 C C1D NDP . . . H 2 43.693 -6.748 12.734 1 28.42 ? C1D NDP 201 B 1 HETATM 36 N N1N NDP . . . H 2 42.264 -6.563 12.601 1 29.17 ? N1N NDP 201 B 1 HETATM 37 C C2N NDP . . . H 2 41.45 -7.064 13.568 1 31.49 ? C2N NDP 201 B 1 HETATM 38 C C3N NDP . . . H 2 40.141 -6.747 13.592 1 30.08 ? C3N NDP 201 B 1 HETATM 39 C C7N NDP . . . H 2 39.368 -7.327 14.679 1 31.06 ? C7N NDP 201 B 1 HETATM 40 O O7N NDP . . . H 2 39.798 -8.208 15.446 1 32.69 ? O7N NDP 201 B 1 HETATM 41 N N7N NDP . . . H 2 38.077 -6.841 14.866 1 27.16 ? N7N NDP 201 B 1 HETATM 42 C C4N NDP . . . H 2 39.536 -5.858 12.585 1 28.09 ? C4N NDP 201 B 1 HETATM 43 C C5N NDP . . . H 2 40.456 -5.572 11.479 1 27.3 ? C5N NDP 201 B 1 HETATM 44 C C6N NDP . . . H 2 41.733 -5.904 11.516 1 26.57 ? C6N NDP 201 B 1 HETATM 45 P P2B NDP . . . H 2 50.291 3.68 5.546 1 39.69 ? P2B NDP 201 B 1 HETATM 46 O O1X NDP . . . H 2 49.754 3.146 4.256 1 33.56 ? O1X NDP 201 B 1 HETATM 47 O O2X NDP . . . H 2 50.537 5.186 5.638 1 39.46 ? O2X NDP 201 B 1 HETATM 48 O O3X NDP . . . H 2 51.187 2.783 6.348 1 41.76 ? O3X NDP 201 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 48 #