data_8COQ
#
_model_server_result.job_id            2H_f4Tz0WHcd5zvCeG3HMQ 
_model_server_result.datetime_utc      '2024-10-10 18:28:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8coq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":202}' 
#
_entry.id    8COQ 
#
_exptl.entry_id    8COQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              280.324 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            5-(2-cyclopropylethynyl)-6-(2-methoxyphenyl)pyrimidine-2,4-diamine 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8COQ 
_cell.length_a            61.474 
_cell.length_b            72.81 
_cell.length_c            71.844 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8COQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 H N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 40 A HIS 38 1_555 E CO CO . A CO 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? 
metalc ? metalc2 E CO CO . A CO 203 1_555 J O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc3 E CO CO . A CO 203 1_555 J O HOH . A HOH 332 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.221 ? 
metalc ? metalc4 E CO CO . A CO 203 1_555 J O HOH . A HOH 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc5 E CO CO . A CO 203 1_555 J O HOH . A HOH 368 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc6 E CO CO . A CO 203 1_555 B NE2 HIS 159 B HIS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc7 B NE2 HIS 40 B HIS 38 1_555 I CO CO . B CO 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? 
metalc ? metalc8 I CO CO . B CO 203 1_555 K O HOH . B HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? 
metalc ? metalc9 I CO CO . B CO 203 1_555 K O HOH . B HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc10 I CO CO . B CO 203 1_555 K O HOH . B HOH 322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? 
metalc ? metalc11 I CO CO . B CO 203 1_555 K O HOH . B HOH 344 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? 
#
_chem_comp.formula           'C16 H16 N4 O' 
_chem_comp.formula_weight    280.324 
_chem_comp.id                VDT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              5-(2-cyclopropylethynyl)-6-(2-methoxyphenyl)pyrimidine-2,4-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N04 C01 VDT sing 462 n n 
C14 O01 VDT sing 463 n n 
C01 N01 VDT doub 464 n y 
C01 N02 VDT sing 465 n y 
N01 C04 VDT sing 466 n y 
O01 C09 VDT sing 467 n n 
N02 C02 VDT doub 468 n y 
C04 N03 VDT sing 469 n n 
C04 C03 VDT doub 470 n y 
C02 C03 VDT sing 471 n y 
C02 C08 VDT sing 472 n n 
C09 C10 VDT doub 473 n y 
C09 C08 VDT sing 474 n y 
C03 C05 VDT sing 475 n n 
C10 C11 VDT sing 476 n y 
C08 C13 VDT doub 477 n y 
C05 C06 VDT trip 478 n n 
C11 C12 VDT doub 479 n y 
C13 C12 VDT sing 480 n y 
C06 C07 VDT sing 481 n n 
C07 C15 VDT sing 482 n n 
C07 C16 VDT sing 483 n n 
C15 C16 VDT sing 484 n n 
C10 H1 VDT sing 485 n n 
C13 H2 VDT sing 486 n n 
C15 H3 VDT sing 487 n n 
C15 H4 VDT sing 488 n n 
C07 H5 VDT sing 489 n n 
C11 H6 VDT sing 490 n n 
C12 H7 VDT sing 491 n n 
C14 H8 VDT sing 492 n n 
C14 H9 VDT sing 493 n n 
C14 H10 VDT sing 494 n n 
C16 H11 VDT sing 495 n n 
C16 H12 VDT sing 496 n n 
N03 H13 VDT sing 497 n n 
N03 H14 VDT sing 498 n n 
N04 H15 VDT sing 499 n n 
N04 H16 VDT sing 500 n n 
#
_atom_sites.entry_id                     8COQ 
_atom_sites.fract_transf_matrix[1][1]    0.016267 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013734 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013919 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 NDP A 1 201 204 NDP NDP . 
D 3 VDT A 1 202 301 VDT LIG . 
E 4 CO A 1 203 3 CO CO . 
F 5 SO4 A 1 204 2 SO4 SO4 . 
G 2 NDP B 1 201 204 NDP NDP . 
H 3 VDT B 1 202 301 VDT LIG . 
I 4 CO B 1 203 4 CO CO . 
J 6 HOH A 1 301 126 HOH HOH . 
J 6 HOH A 2 302 72 HOH HOH . 
J 6 HOH A 3 303 73 HOH HOH . 
J 6 HOH A 4 304 133 HOH HOH . 
J 6 HOH A 5 305 131 HOH HOH . 
J 6 HOH A 6 306 26 HOH HOH . 
J 6 HOH A 7 307 107 HOH HOH . 
J 6 HOH A 8 308 62 HOH HOH . 
J 6 HOH A 9 309 51 HOH HOH . 
J 6 HOH A 10 310 134 HOH HOH . 
J 6 HOH A 11 311 71 HOH HOH . 
J 6 HOH A 12 312 10 HOH HOH . 
J 6 HOH A 13 313 152 HOH HOH . 
J 6 HOH A 14 314 65 HOH HOH . 
J 6 HOH A 15 315 75 HOH HOH . 
J 6 HOH A 16 316 34 HOH HOH . 
J 6 HOH A 17 317 52 HOH HOH . 
J 6 HOH A 18 318 48 HOH HOH . 
J 6 HOH A 19 319 117 HOH HOH . 
J 6 HOH A 20 320 16 HOH HOH . 
J 6 HOH A 21 321 143 HOH HOH . 
J 6 HOH A 22 322 35 HOH HOH . 
J 6 HOH A 23 323 87 HOH HOH . 
J 6 HOH A 24 324 108 HOH HOH . 
J 6 HOH A 25 325 68 HOH HOH . 
J 6 HOH A 26 326 100 HOH HOH . 
J 6 HOH A 27 327 96 HOH HOH . 
J 6 HOH A 28 328 61 HOH HOH . 
J 6 HOH A 29 329 142 HOH HOH . 
J 6 HOH A 30 330 103 HOH HOH . 
J 6 HOH A 31 331 38 HOH HOH . 
J 6 HOH A 32 332 4 HOH HOH . 
J 6 HOH A 33 333 23 HOH HOH . 
J 6 HOH A 34 334 83 HOH HOH . 
J 6 HOH A 35 335 31 HOH HOH . 
J 6 HOH A 36 336 112 HOH HOH . 
J 6 HOH A 37 337 63 HOH HOH . 
J 6 HOH A 38 338 33 HOH HOH . 
J 6 HOH A 39 339 41 HOH HOH . 
J 6 HOH A 40 340 95 HOH HOH . 
J 6 HOH A 41 341 1 HOH HOH . 
J 6 HOH A 42 342 113 HOH HOH . 
J 6 HOH A 43 343 25 HOH HOH . 
J 6 HOH A 44 344 127 HOH HOH . 
J 6 HOH A 45 345 36 HOH HOH . 
J 6 HOH A 46 346 89 HOH HOH . 
J 6 HOH A 47 347 77 HOH HOH . 
J 6 HOH A 48 348 49 HOH HOH . 
J 6 HOH A 49 349 18 HOH HOH . 
J 6 HOH A 50 350 22 HOH HOH . 
J 6 HOH A 51 351 5 HOH HOH . 
J 6 HOH A 52 352 55 HOH HOH . 
J 6 HOH A 53 353 130 HOH HOH . 
J 6 HOH A 54 354 111 HOH HOH . 
J 6 HOH A 55 355 144 HOH HOH . 
J 6 HOH A 56 356 82 HOH HOH . 
J 6 HOH A 57 357 60 HOH HOH . 
J 6 HOH A 58 358 81 HOH HOH . 
J 6 HOH A 59 359 109 HOH HOH . 
J 6 HOH A 60 360 7 HOH HOH . 
J 6 HOH A 61 361 15 HOH HOH . 
J 6 HOH A 62 362 121 HOH HOH . 
J 6 HOH A 63 363 115 HOH HOH . 
J 6 HOH A 64 364 78 HOH HOH . 
J 6 HOH A 65 365 85 HOH HOH . 
J 6 HOH A 66 366 104 HOH HOH . 
J 6 HOH A 67 367 84 HOH HOH . 
J 6 HOH A 68 368 13 HOH HOH . 
J 6 HOH A 69 369 118 HOH HOH . 
J 6 HOH A 70 370 70 HOH HOH . 
J 6 HOH A 71 371 122 HOH HOH . 
J 6 HOH A 72 372 150 HOH HOH . 
J 6 HOH A 73 373 138 HOH HOH . 
J 6 HOH A 74 374 32 HOH HOH . 
J 6 HOH A 75 375 136 HOH HOH . 
J 6 HOH A 76 376 123 HOH HOH . 
K 6 HOH B 1 301 99 HOH HOH . 
K 6 HOH B 2 302 129 HOH HOH . 
K 6 HOH B 3 303 141 HOH HOH . 
K 6 HOH B 4 304 102 HOH HOH . 
K 6 HOH B 5 305 86 HOH HOH . 
K 6 HOH B 6 306 24 HOH HOH . 
K 6 HOH B 7 307 57 HOH HOH . 
K 6 HOH B 8 308 42 HOH HOH . 
K 6 HOH B 9 309 92 HOH HOH . 
K 6 HOH B 10 310 40 HOH HOH . 
K 6 HOH B 11 311 74 HOH HOH . 
K 6 HOH B 12 312 37 HOH HOH . 
K 6 HOH B 13 313 135 HOH HOH . 
K 6 HOH B 14 314 2 HOH HOH . 
K 6 HOH B 15 315 110 HOH HOH . 
K 6 HOH B 16 316 54 HOH HOH . 
K 6 HOH B 17 317 27 HOH HOH . 
K 6 HOH B 18 318 8 HOH HOH . 
K 6 HOH B 19 319 14 HOH HOH . 
K 6 HOH B 20 320 20 HOH HOH . 
K 6 HOH B 21 321 44 HOH HOH . 
K 6 HOH B 22 322 6 HOH HOH . 
K 6 HOH B 23 323 132 HOH HOH . 
K 6 HOH B 24 324 88 HOH HOH . 
K 6 HOH B 25 325 125 HOH HOH . 
K 6 HOH B 26 326 29 HOH HOH . 
K 6 HOH B 27 327 64 HOH HOH . 
K 6 HOH B 28 328 19 HOH HOH . 
K 6 HOH B 29 329 45 HOH HOH . 
K 6 HOH B 30 330 43 HOH HOH . 
K 6 HOH B 31 331 12 HOH HOH . 
K 6 HOH B 32 332 58 HOH HOH . 
K 6 HOH B 33 333 50 HOH HOH . 
K 6 HOH B 34 334 80 HOH HOH . 
K 6 HOH B 35 335 28 HOH HOH . 
K 6 HOH B 36 336 66 HOH HOH . 
K 6 HOH B 37 337 76 HOH HOH . 
K 6 HOH B 38 338 9 HOH HOH . 
K 6 HOH B 39 339 3 HOH HOH . 
K 6 HOH B 40 340 39 HOH HOH . 
K 6 HOH B 41 341 140 HOH HOH . 
K 6 HOH B 42 342 17 HOH HOH . 
K 6 HOH B 43 343 30 HOH HOH . 
K 6 HOH B 44 344 21 HOH HOH . 
K 6 HOH B 45 345 124 HOH HOH . 
K 6 HOH B 46 346 91 HOH HOH . 
K 6 HOH B 47 347 94 HOH HOH . 
K 6 HOH B 48 348 137 HOH HOH . 
K 6 HOH B 49 349 47 HOH HOH . 
K 6 HOH B 50 350 90 HOH HOH . 
K 6 HOH B 51 351 46 HOH HOH . 
K 6 HOH B 52 352 69 HOH HOH . 
K 6 HOH B 53 353 120 HOH HOH . 
K 6 HOH B 54 354 119 HOH HOH . 
K 6 HOH B 55 355 56 HOH HOH . 
K 6 HOH B 56 356 146 HOH HOH . 
K 6 HOH B 57 357 116 HOH HOH . 
K 6 HOH B 58 358 128 HOH HOH . 
K 6 HOH B 59 359 53 HOH HOH . 
K 6 HOH B 60 360 97 HOH HOH . 
K 6 HOH B 61 361 147 HOH HOH . 
K 6 HOH B 62 362 106 HOH HOH . 
K 6 HOH B 63 363 93 HOH HOH . 
K 6 HOH B 64 364 98 HOH HOH . 
K 6 HOH B 65 365 139 HOH HOH . 
K 6 HOH B 66 366 11 HOH HOH . 
K 6 HOH B 67 367 114 HOH HOH . 
K 6 HOH B 68 368 79 HOH HOH . 
K 6 HOH B 69 369 149 HOH HOH . 
K 6 HOH B 70 370 151 HOH HOH . 
K 6 HOH B 71 371 105 HOH HOH . 
K 6 HOH B 72 372 101 HOH HOH . 
K 6 HOH B 73 373 67 HOH HOH . 
K 6 HOH B 74 374 148 HOH HOH . 
K 6 HOH B 75 375 145 HOH HOH . 
K 6 HOH B 76 376 59 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 VDT . . . H 3 21.954 6.587 -29.758 1 28.85 ? C10 VDT 202 B 1 
HETATM 2 C C13 VDT . . . H 3 20.197 7.934 -27.993 1 28.76 ? C13 VDT 202 B 1 
HETATM 3 C C15 VDT . . . H 3 23.888 10.377 -25.314 1 37.17 ? C15 VDT 202 B 1 
HETATM 4 C C01 VDT . . . H 3 19.168 4.067 -25.393 1 24.3 ? C01 VDT 202 B 1 
HETATM 5 C C02 VDT . . . H 3 20.336 5.898 -26.397 1 23.99 ? C02 VDT 202 B 1 
HETATM 6 C C03 VDT . . . H 3 20.825 6.261 -25.143 1 23 ? C03 VDT 202 B 1 
HETATM 7 C C04 VDT . . . H 3 20.411 5.443 -24.111 1 23.95 ? C04 VDT 202 B 1 
HETATM 8 C C05 VDT . . . H 3 21.745 7.455 -24.826 1 23.96 ? C05 VDT 202 B 1 
HETATM 9 C C06 VDT . . . H 3 22.455 8.372 -24.539 1 28.71 ? C06 VDT 202 B 1 
HETATM 10 C C07 VDT . . . H 3 23.393 9.534 -24.144 1 29.56 ? C07 VDT 202 B 1 
HETATM 11 C C08 VDT . . . H 3 20.686 6.643 -27.686 1 26.04 ? C08 VDT 202 B 1 
HETATM 12 C C09 VDT . . . H 3 21.542 5.982 -28.567 1 25.13 ? C09 VDT 202 B 1 
HETATM 13 C C11 VDT . . . H 3 21.471 7.849 -30.056 1 29.3 ? C11 VDT 202 B 1 
HETATM 14 C C12 VDT . . . H 3 20.604 8.516 -29.2 1 33.12 ? C12 VDT 202 B 1 
HETATM 15 C C14 VDT . . . H 3 23.235 4.335 -28.749 1 31.76 ? C14 VDT 202 B 1 
HETATM 16 C C16 VDT . . . H 3 22.862 10.952 -24.322 1 34.12 ? C16 VDT 202 B 1 
HETATM 17 N N01 VDT . . . H 3 19.616 4.406 -24.196 1 22.85 ? N01 VDT 202 B 1 
HETATM 18 N N02 VDT . . . H 3 19.559 4.83 -26.407 1 25.51 ? N02 VDT 202 B 1 
HETATM 19 N N03 VDT . . . H 3 20.863 5.748 -22.759 1 21.74 ? N03 VDT 202 B 1 
HETATM 20 N N04 VDT . . . H 3 18.308 2.941 -25.578 1 23.06 ? N04 VDT 202 B 1 
HETATM 21 O O01 VDT . . . H 3 21.992 4.71 -28.184 1 30.46 ? O01 VDT 202 B 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           21 
#