data_8COT # _model_server_result.job_id uBX3zEuO0qkLk1ZBpKdfog _model_server_result.datetime_utc '2024-11-06 03:01:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cot # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":501}' # _entry.id 8COT # _exptl.entry_id 8COT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 414.889 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(dimethylamino)ethyl 5-(2-azanyl-6-chloranyl-pyrimidin-4-yl)-2-methyl-4-(phenylmethyl)pyrazole-3-carboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8COT _cell.length_a 99.314 _cell.length_b 99.314 _cell.length_c 98.854 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8COT _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ALA 252 A ALA 252 1_555 A N CME 253 A CME 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C CME 253 A CME 253 1_555 A N THR 254 A THR 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? # _chem_comp.formula 'C20 H23 Cl N6 O2' _chem_comp.formula_weight 414.889 _chem_comp.id VBB _chem_comp.mon_nstd_flag . _chem_comp.name '2-(dimethylamino)ethyl 5-(2-azanyl-6-chloranyl-pyrimidin-4-yl)-2-methyl-4-(phenylmethyl)pyrazole-3-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C24 N23 VBB sing 421 n n C25 N23 VBB sing 422 n n N23 C22 VBB sing 423 n n C22 C21 VBB sing 424 n n C21 O19 VBB sing 425 n n O19 C18 VBB sing 426 n n C26 C10 VBB sing 427 n n C26 C14 VBB sing 428 n n O20 C18 VBB doub 429 n n C18 C11 VBB sing 430 n n C10 C11 VBB doub 431 n y C10 C09 VBB sing 432 n y C11 N07 VBB sing 433 n y N28 C02 VBB sing 434 n n N03 C02 VBB doub 435 n y N03 C04 VBB sing 436 n y C14 C15 VBB doub 437 n y C14 C13 VBB sing 438 n y C09 C04 VBB sing 439 n n C09 N08 VBB doub 440 n y C02 N01 VBB sing 441 n y N07 C27 VBB sing 442 n n N07 N08 VBB sing 443 n y C04 C05 VBB doub 444 n y C15 C16 VBB sing 445 n y N01 C06 VBB doub 446 n y C05 C06 VBB sing 447 n y C13 C12 VBB doub 448 n y C06 CL29 VBB sing 449 n n C16 C17 VBB doub 450 n y C12 C17 VBB sing 451 n y C05 H051 VBB sing 452 n n C12 H121 VBB sing 453 n n C13 H131 VBB sing 454 n n C15 H151 VBB sing 455 n n C16 H161 VBB sing 456 n n C17 H171 VBB sing 457 n n C21 H211 VBB sing 458 n n C21 H212 VBB sing 459 n n C22 H221 VBB sing 460 n n C22 H222 VBB sing 461 n n C24 H243 VBB sing 462 n n C24 H242 VBB sing 463 n n C24 H241 VBB sing 464 n n C25 H252 VBB sing 465 n n C25 H251 VBB sing 466 n n C25 H253 VBB sing 467 n n C26 H261 VBB sing 468 n n C26 H262 VBB sing 469 n n C27 H273 VBB sing 470 n n C27 H272 VBB sing 471 n n C27 H271 VBB sing 472 n n N28 H282 VBB sing 473 n n N28 H281 VBB sing 474 n n # _atom_sites.entry_id 8COT _atom_sites.fract_transf_matrix[1][1] 0.010069 _atom_sites.fract_transf_matrix[1][2] 0.005813 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011627 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 VBB A 1 501 501 VBB 109 . C 3 DMS A 1 502 601 DMS DMS . D 3 DMS A 1 503 701 DMS DMS . E 3 DMS A 1 504 801 DMS DMS . F 4 EDO A 1 505 901 EDO EDO . G 5 ACT A 1 506 1001 ACT ACT . H 3 DMS A 1 507 1101 DMS DMS . I 5 ACT A 1 508 1201 ACT ACT . J 4 EDO A 1 509 1301 EDO EDO . K 5 ACT A 1 510 1401 ACT ACT . L 5 ACT A 1 511 1501 ACT ACT . M 4 EDO A 1 512 1601 EDO EDO . N 5 ACT A 1 513 1701 ACT ACT . O 4 EDO A 1 514 1801 EDO EDO . P 6 HOH A 1 601 70 HOH HOH . P 6 HOH A 2 602 124 HOH HOH . P 6 HOH A 3 603 17 HOH HOH . P 6 HOH A 4 604 5 HOH HOH . P 6 HOH A 5 605 11 HOH HOH . P 6 HOH A 6 606 86 HOH HOH . P 6 HOH A 7 607 75 HOH HOH . P 6 HOH A 8 608 48 HOH HOH . P 6 HOH A 9 609 21 HOH HOH . P 6 HOH A 10 610 51 HOH HOH . P 6 HOH A 11 611 36 HOH HOH . P 6 HOH A 12 612 32 HOH HOH . P 6 HOH A 13 613 78 HOH HOH . P 6 HOH A 14 614 14 HOH HOH . P 6 HOH A 15 615 91 HOH HOH . P 6 HOH A 16 616 2 HOH HOH . P 6 HOH A 17 617 49 HOH HOH . P 6 HOH A 18 618 73 HOH HOH . P 6 HOH A 19 619 26 HOH HOH . P 6 HOH A 20 620 30 HOH HOH . P 6 HOH A 21 621 9 HOH HOH . P 6 HOH A 22 622 58 HOH HOH . P 6 HOH A 23 623 15 HOH HOH . P 6 HOH A 24 624 33 HOH HOH . P 6 HOH A 25 625 18 HOH HOH . P 6 HOH A 26 626 29 HOH HOH . P 6 HOH A 27 627 53 HOH HOH . P 6 HOH A 28 628 37 HOH HOH . P 6 HOH A 29 629 52 HOH HOH . P 6 HOH A 30 630 20 HOH HOH . P 6 HOH A 31 631 61 HOH HOH . P 6 HOH A 32 632 62 HOH HOH . P 6 HOH A 33 633 27 HOH HOH . P 6 HOH A 34 634 109 HOH HOH . P 6 HOH A 35 635 104 HOH HOH . P 6 HOH A 36 636 12 HOH HOH . P 6 HOH A 37 637 59 HOH HOH . P 6 HOH A 38 638 39 HOH HOH . P 6 HOH A 39 639 16 HOH HOH . P 6 HOH A 40 640 114 HOH HOH . P 6 HOH A 41 641 10 HOH HOH . P 6 HOH A 42 642 127 HOH HOH . P 6 HOH A 43 643 68 HOH HOH . P 6 HOH A 44 644 13 HOH HOH . P 6 HOH A 45 645 77 HOH HOH . P 6 HOH A 46 646 60 HOH HOH . P 6 HOH A 47 647 55 HOH HOH . P 6 HOH A 48 648 96 HOH HOH . P 6 HOH A 49 649 1 HOH HOH . P 6 HOH A 50 650 57 HOH HOH . P 6 HOH A 51 651 46 HOH HOH . P 6 HOH A 52 652 130 HOH HOH . P 6 HOH A 53 653 131 HOH HOH . P 6 HOH A 54 654 69 HOH HOH . P 6 HOH A 55 655 43 HOH HOH . P 6 HOH A 56 656 28 HOH HOH . P 6 HOH A 57 657 3 HOH HOH . P 6 HOH A 58 658 64 HOH HOH . P 6 HOH A 59 659 41 HOH HOH . P 6 HOH A 60 660 45 HOH HOH . P 6 HOH A 61 661 38 HOH HOH . P 6 HOH A 62 662 8 HOH HOH . P 6 HOH A 63 663 83 HOH HOH . P 6 HOH A 64 664 47 HOH HOH . P 6 HOH A 65 665 94 HOH HOH . P 6 HOH A 66 666 111 HOH HOH . P 6 HOH A 67 667 74 HOH HOH . P 6 HOH A 68 668 87 HOH HOH . P 6 HOH A 69 669 113 HOH HOH . P 6 HOH A 70 670 19 HOH HOH . P 6 HOH A 71 671 72 HOH HOH . P 6 HOH A 72 672 34 HOH HOH . P 6 HOH A 73 673 63 HOH HOH . P 6 HOH A 74 674 31 HOH HOH . P 6 HOH A 75 675 106 HOH HOH . P 6 HOH A 76 676 25 HOH HOH . P 6 HOH A 77 677 85 HOH HOH . P 6 HOH A 78 678 90 HOH HOH . P 6 HOH A 79 679 65 HOH HOH . P 6 HOH A 80 680 128 HOH HOH . P 6 HOH A 81 681 99 HOH HOH . P 6 HOH A 82 682 4 HOH HOH . P 6 HOH A 83 683 6 HOH HOH . P 6 HOH A 84 684 110 HOH HOH . P 6 HOH A 85 685 102 HOH HOH . P 6 HOH A 86 686 50 HOH HOH . P 6 HOH A 87 687 93 HOH HOH . P 6 HOH A 88 688 101 HOH HOH . P 6 HOH A 89 689 42 HOH HOH . P 6 HOH A 90 690 92 HOH HOH . P 6 HOH A 91 691 100 HOH HOH . P 6 HOH A 92 692 24 HOH HOH . P 6 HOH A 93 693 123 HOH HOH . P 6 HOH A 94 694 23 HOH HOH . P 6 HOH A 95 695 54 HOH HOH . P 6 HOH A 96 696 56 HOH HOH . P 6 HOH A 97 697 71 HOH HOH . P 6 HOH A 98 698 76 HOH HOH . P 6 HOH A 99 699 129 HOH HOH . P 6 HOH A 100 700 88 HOH HOH . P 6 HOH A 101 701 7 HOH HOH . P 6 HOH A 102 702 22 HOH HOH . P 6 HOH A 103 703 95 HOH HOH . P 6 HOH A 104 704 89 HOH HOH . P 6 HOH A 105 705 122 HOH HOH . P 6 HOH A 106 706 119 HOH HOH . P 6 HOH A 107 707 112 HOH HOH . P 6 HOH A 108 708 79 HOH HOH . P 6 HOH A 109 709 115 HOH HOH . P 6 HOH A 110 710 84 HOH HOH . P 6 HOH A 111 711 82 HOH HOH . P 6 HOH A 112 712 40 HOH HOH . P 6 HOH A 113 713 116 HOH HOH . P 6 HOH A 114 714 120 HOH HOH . P 6 HOH A 115 715 35 HOH HOH . P 6 HOH A 116 716 107 HOH HOH . P 6 HOH A 117 717 121 HOH HOH . P 6 HOH A 118 718 103 HOH HOH . P 6 HOH A 119 719 126 HOH HOH . P 6 HOH A 120 720 118 HOH HOH . P 6 HOH A 121 721 105 HOH HOH . P 6 HOH A 122 722 66 HOH HOH . P 6 HOH A 123 723 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C02 VBB . . . B 2 -26.139 3.954 0.694 1 40.92 ? C02 VBB 501 A 1 HETATM 2 C C04 VBB . . . B 2 -28.656 4.246 0.867 1 39.31 ? C04 VBB 501 A 1 HETATM 3 C C05 VBB . . . B 2 -28.449 5.629 1.391 1 36.84 ? C05 VBB 501 A 1 HETATM 4 C C06 VBB . . . B 2 -27.059 6.132 1.553 1 37.55 ? C06 VBB 501 A 1 HETATM 5 C C09 VBB . . . B 2 -30.085 3.747 0.693 1 45.99 ? C09 VBB 501 A 1 HETATM 6 C C10 VBB . . . B 2 -30.521 2.572 0.138 1 50.03 ? C10 VBB 501 A 1 HETATM 7 C C11 VBB . . . B 2 -31.893 2.572 0.192 1 55.91 ? C11 VBB 501 A 1 HETATM 8 C C12 VBB . . . B 2 -27.582 -0.369 2.543 1 48.81 ? C12 VBB 501 A 1 HETATM 9 C C13 VBB . . . B 2 -27.94 0.603 1.424 1 46.02 ? C13 VBB 501 A 1 HETATM 10 C C14 VBB . . . B 2 -29.267 0.478 0.69 1 48.44 ? C14 VBB 501 A 1 HETATM 11 C C15 VBB . . . B 2 -30.236 -0.631 1.078 1 52.85 ? C15 VBB 501 A 1 HETATM 12 C C16 VBB . . . B 2 -29.879 -1.613 2.195 1 54.78 ? C16 VBB 501 A 1 HETATM 13 C C17 VBB . . . B 2 -28.552 -1.478 2.93 1 51.25 ? C17 VBB 501 A 1 HETATM 14 C C18 VBB . . . B 2 -32.845 1.476 -0.306 1 65.22 ? C18 VBB 501 A 1 HETATM 15 C C21 VBB . . . B 2 -32.352 -0.032 -2.096 1 76.65 ? C21 VBB 501 A 1 HETATM 16 C C22 VBB . . . B 2 -33.75 -0.27 -2.669 1 79.73 ? C22 VBB 501 A 1 HETATM 17 C C24 VBB . . . B 2 -33.144 -0.752 -4.931 1 80.73 ? C24 VBB 501 A 1 HETATM 18 C C25 VBB . . . B 2 -35.174 0.376 -4.475 1 83.79 ? C25 VBB 501 A 1 HETATM 19 C C26 VBB . . . B 2 -29.629 1.461 -0.429 1 50.38 ? C26 VBB 501 A 1 HETATM 20 C C27 VBB . . . B 2 -33.628 4.173 1.032 1 56.87 ? C27 VBB 501 A 1 HETATM 21 N N01 VBB . . . B 2 -25.936 5.308 1.208 1 37.98 ? N01 VBB 501 A 1 HETATM 22 N N03 VBB . . . B 2 -27.507 3.434 0.525 1 39.58 ? N03 VBB 501 A 1 HETATM 23 N N07 VBB . . . B 2 -32.272 3.723 0.762 1 50.21 ? N07 VBB 501 A 1 HETATM 24 N N08 VBB . . . B 2 -31.14 4.451 1.068 1 47.36 ? N08 VBB 501 A 1 HETATM 25 N N23 VBB . . . B 2 -33.796 0.2 -4.048 1 82.06 ? N23 VBB 501 A 1 HETATM 26 N N28 VBB . . . B 2 -24.968 3.171 0.381 1 44.65 ? N28 VBB 501 A 1 HETATM 27 O O19 VBB . . . B 2 -32.389 0.212 -0.714 1 72 ? O19 VBB 501 A 1 HETATM 28 O O20 VBB . . . B 2 -34.005 1.701 -0.35 1 67.23 ? O20 VBB 501 A 1 HETATM 29 CL CL29 VBB . . . B 2 -26.707 7.753 2.165 1 41.44 ? CL29 VBB 501 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #