data_8COT
#
_model_server_result.job_id            4p6Emx5i3fZSEQw5GGzV0w 
_model_server_result.datetime_utc      '2024-11-06 03:15:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cot 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":505}' 
#
_entry.id    8COT 
#
_exptl.entry_id    8COT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8COT 
_cell.length_a            99.314 
_cell.length_b            99.314 
_cell.length_c            98.854 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8COT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 J N N 
? 4 M N N 
? 4 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 252 A ALA 252 1_555 A N CME 253 A CME 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 A C CME 253 A CME 253 1_555 A N THR 254 A THR 254 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 119 n n 
C1 C2 EDO sing 120 n n 
C1 H11 EDO sing 121 n n 
C1 H12 EDO sing 122 n n 
O1 HO1 EDO sing 123 n n 
C2 O2 EDO sing 124 n n 
C2 H21 EDO sing 125 n n 
C2 H22 EDO sing 126 n n 
O2 HO2 EDO sing 127 n n 
#
_atom_sites.entry_id                     8COT 
_atom_sites.fract_transf_matrix[1][1]    0.010069 
_atom_sites.fract_transf_matrix[1][2]    0.005813 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011627 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010116 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 VBB A 1 501 501 VBB 109 . 
C 3 DMS A 1 502 601 DMS DMS . 
D 3 DMS A 1 503 701 DMS DMS . 
E 3 DMS A 1 504 801 DMS DMS . 
F 4 EDO A 1 505 901 EDO EDO . 
G 5 ACT A 1 506 1001 ACT ACT . 
H 3 DMS A 1 507 1101 DMS DMS . 
I 5 ACT A 1 508 1201 ACT ACT . 
J 4 EDO A 1 509 1301 EDO EDO . 
K 5 ACT A 1 510 1401 ACT ACT . 
L 5 ACT A 1 511 1501 ACT ACT . 
M 4 EDO A 1 512 1601 EDO EDO . 
N 5 ACT A 1 513 1701 ACT ACT . 
O 4 EDO A 1 514 1801 EDO EDO . 
P 6 HOH A 1 601 70 HOH HOH . 
P 6 HOH A 2 602 124 HOH HOH . 
P 6 HOH A 3 603 17 HOH HOH . 
P 6 HOH A 4 604 5 HOH HOH . 
P 6 HOH A 5 605 11 HOH HOH . 
P 6 HOH A 6 606 86 HOH HOH . 
P 6 HOH A 7 607 75 HOH HOH . 
P 6 HOH A 8 608 48 HOH HOH . 
P 6 HOH A 9 609 21 HOH HOH . 
P 6 HOH A 10 610 51 HOH HOH . 
P 6 HOH A 11 611 36 HOH HOH . 
P 6 HOH A 12 612 32 HOH HOH . 
P 6 HOH A 13 613 78 HOH HOH . 
P 6 HOH A 14 614 14 HOH HOH . 
P 6 HOH A 15 615 91 HOH HOH . 
P 6 HOH A 16 616 2 HOH HOH . 
P 6 HOH A 17 617 49 HOH HOH . 
P 6 HOH A 18 618 73 HOH HOH . 
P 6 HOH A 19 619 26 HOH HOH . 
P 6 HOH A 20 620 30 HOH HOH . 
P 6 HOH A 21 621 9 HOH HOH . 
P 6 HOH A 22 622 58 HOH HOH . 
P 6 HOH A 23 623 15 HOH HOH . 
P 6 HOH A 24 624 33 HOH HOH . 
P 6 HOH A 25 625 18 HOH HOH . 
P 6 HOH A 26 626 29 HOH HOH . 
P 6 HOH A 27 627 53 HOH HOH . 
P 6 HOH A 28 628 37 HOH HOH . 
P 6 HOH A 29 629 52 HOH HOH . 
P 6 HOH A 30 630 20 HOH HOH . 
P 6 HOH A 31 631 61 HOH HOH . 
P 6 HOH A 32 632 62 HOH HOH . 
P 6 HOH A 33 633 27 HOH HOH . 
P 6 HOH A 34 634 109 HOH HOH . 
P 6 HOH A 35 635 104 HOH HOH . 
P 6 HOH A 36 636 12 HOH HOH . 
P 6 HOH A 37 637 59 HOH HOH . 
P 6 HOH A 38 638 39 HOH HOH . 
P 6 HOH A 39 639 16 HOH HOH . 
P 6 HOH A 40 640 114 HOH HOH . 
P 6 HOH A 41 641 10 HOH HOH . 
P 6 HOH A 42 642 127 HOH HOH . 
P 6 HOH A 43 643 68 HOH HOH . 
P 6 HOH A 44 644 13 HOH HOH . 
P 6 HOH A 45 645 77 HOH HOH . 
P 6 HOH A 46 646 60 HOH HOH . 
P 6 HOH A 47 647 55 HOH HOH . 
P 6 HOH A 48 648 96 HOH HOH . 
P 6 HOH A 49 649 1 HOH HOH . 
P 6 HOH A 50 650 57 HOH HOH . 
P 6 HOH A 51 651 46 HOH HOH . 
P 6 HOH A 52 652 130 HOH HOH . 
P 6 HOH A 53 653 131 HOH HOH . 
P 6 HOH A 54 654 69 HOH HOH . 
P 6 HOH A 55 655 43 HOH HOH . 
P 6 HOH A 56 656 28 HOH HOH . 
P 6 HOH A 57 657 3 HOH HOH . 
P 6 HOH A 58 658 64 HOH HOH . 
P 6 HOH A 59 659 41 HOH HOH . 
P 6 HOH A 60 660 45 HOH HOH . 
P 6 HOH A 61 661 38 HOH HOH . 
P 6 HOH A 62 662 8 HOH HOH . 
P 6 HOH A 63 663 83 HOH HOH . 
P 6 HOH A 64 664 47 HOH HOH . 
P 6 HOH A 65 665 94 HOH HOH . 
P 6 HOH A 66 666 111 HOH HOH . 
P 6 HOH A 67 667 74 HOH HOH . 
P 6 HOH A 68 668 87 HOH HOH . 
P 6 HOH A 69 669 113 HOH HOH . 
P 6 HOH A 70 670 19 HOH HOH . 
P 6 HOH A 71 671 72 HOH HOH . 
P 6 HOH A 72 672 34 HOH HOH . 
P 6 HOH A 73 673 63 HOH HOH . 
P 6 HOH A 74 674 31 HOH HOH . 
P 6 HOH A 75 675 106 HOH HOH . 
P 6 HOH A 76 676 25 HOH HOH . 
P 6 HOH A 77 677 85 HOH HOH . 
P 6 HOH A 78 678 90 HOH HOH . 
P 6 HOH A 79 679 65 HOH HOH . 
P 6 HOH A 80 680 128 HOH HOH . 
P 6 HOH A 81 681 99 HOH HOH . 
P 6 HOH A 82 682 4 HOH HOH . 
P 6 HOH A 83 683 6 HOH HOH . 
P 6 HOH A 84 684 110 HOH HOH . 
P 6 HOH A 85 685 102 HOH HOH . 
P 6 HOH A 86 686 50 HOH HOH . 
P 6 HOH A 87 687 93 HOH HOH . 
P 6 HOH A 88 688 101 HOH HOH . 
P 6 HOH A 89 689 42 HOH HOH . 
P 6 HOH A 90 690 92 HOH HOH . 
P 6 HOH A 91 691 100 HOH HOH . 
P 6 HOH A 92 692 24 HOH HOH . 
P 6 HOH A 93 693 123 HOH HOH . 
P 6 HOH A 94 694 23 HOH HOH . 
P 6 HOH A 95 695 54 HOH HOH . 
P 6 HOH A 96 696 56 HOH HOH . 
P 6 HOH A 97 697 71 HOH HOH . 
P 6 HOH A 98 698 76 HOH HOH . 
P 6 HOH A 99 699 129 HOH HOH . 
P 6 HOH A 100 700 88 HOH HOH . 
P 6 HOH A 101 701 7 HOH HOH . 
P 6 HOH A 102 702 22 HOH HOH . 
P 6 HOH A 103 703 95 HOH HOH . 
P 6 HOH A 104 704 89 HOH HOH . 
P 6 HOH A 105 705 122 HOH HOH . 
P 6 HOH A 106 706 119 HOH HOH . 
P 6 HOH A 107 707 112 HOH HOH . 
P 6 HOH A 108 708 79 HOH HOH . 
P 6 HOH A 109 709 115 HOH HOH . 
P 6 HOH A 110 710 84 HOH HOH . 
P 6 HOH A 111 711 82 HOH HOH . 
P 6 HOH A 112 712 40 HOH HOH . 
P 6 HOH A 113 713 116 HOH HOH . 
P 6 HOH A 114 714 120 HOH HOH . 
P 6 HOH A 115 715 35 HOH HOH . 
P 6 HOH A 116 716 107 HOH HOH . 
P 6 HOH A 117 717 121 HOH HOH . 
P 6 HOH A 118 718 103 HOH HOH . 
P 6 HOH A 119 719 126 HOH HOH . 
P 6 HOH A 120 720 118 HOH HOH . 
P 6 HOH A 121 721 105 HOH HOH . 
P 6 HOH A 122 722 66 HOH HOH . 
P 6 HOH A 123 723 125 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . F 4 -47.646 1.373 -11.198 1 75.24 ? C1 EDO 505 A 1 
HETATM 2 O O1 EDO . . . F 4 -48.166 2.697 -11.033 1 77.19 ? O1 EDO 505 A 1 
HETATM 3 C C2 EDO . . . F 4 -47.447 0.748 -9.824 1 73.44 ? C2 EDO 505 A 1 
HETATM 4 O O2 EDO . . . F 4 -46.859 -0.549 -9.952 1 71.09 ? O2 EDO 505 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#