data_8COX # _model_server_result.job_id 7VwHwhPuHTR2MqgIs9Uuiw _model_server_result.datetime_utc '2025-01-26 14:08:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cox # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":204}' # _entry.id 8COX # _exptl.entry_id 8COX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 343.403 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[3-[2,6-bis(azanyl)-5-(2-cyclopropylethynyl)pyrimidin-4-yl]phenyl]methanesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8COX _cell.length_a 61.481 _cell.length_b 72.265 _cell.length_c 72.843 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8COX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id J _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B NH1 ARG 69 B ARG 67 1_555 H O3X NDP . B NDP 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.39 ? metalc ? metalc1 A NE2 HIS 159 A HIS 157 1_555 F CO CO . A CO 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc2 F CO CO . A CO 204 1_555 B NE2 HIS 40 B HIS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? metalc ? metalc3 F CO CO . A CO 204 1_555 L O HOH . B HOH 306 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? metalc ? metalc4 F CO CO . A CO 204 1_555 L O HOH . B HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc5 F CO CO . A CO 204 1_555 L O HOH . B HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? # _chem_comp.formula 'C16 H17 N5 O2 S' _chem_comp.formula_weight 343.403 _chem_comp.id VBJ _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[3-[2,6-bis(azanyl)-5-(2-cyclopropylethynyl)pyrimidin-4-yl]phenyl]methanesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 S1 VBJ sing 462 n n C14 C15 VBJ sing 463 n n C14 C13 VBJ sing 464 n n C15 C13 VBJ sing 465 n n O2 S1 VBJ doub 466 n n S1 O1 VBJ doub 467 n n S1 N1 VBJ sing 468 n n C13 C12 VBJ sing 469 n n C3 C4 VBJ doub 470 n y C3 C2 VBJ sing 471 n y C4 C5 VBJ sing 472 n y N1 C2 VBJ sing 473 n n C12 C11 VBJ trip 474 n n C2 C16 VBJ doub 475 n y C5 C6 VBJ doub 476 n y C11 C10 VBJ sing 477 n n C16 C6 VBJ sing 478 n y C6 C7 VBJ sing 479 n n C10 C7 VBJ doub 480 n y C10 C9 VBJ sing 481 n y C7 N2 VBJ sing 482 n y N5 C9 VBJ sing 483 n n C9 N4 VBJ doub 484 n y N2 C8 VBJ doub 485 n y N4 C8 VBJ sing 486 n y C8 N3 VBJ sing 487 n n N1 H4 VBJ sing 488 n n N3 H8 VBJ sing 489 n n N3 H9 VBJ sing 490 n n C4 H6 VBJ sing 491 n n C5 H7 VBJ sing 492 n n C13 H12 VBJ sing 493 n n C15 H16 VBJ sing 494 n n C15 H15 VBJ sing 495 n n C1 H1 VBJ sing 496 n n C1 H2 VBJ sing 497 n n C1 H3 VBJ sing 498 n n C14 H13 VBJ sing 499 n n C14 H14 VBJ sing 500 n n C16 H17 VBJ sing 501 n n C3 H5 VBJ sing 502 n n N5 H11 VBJ sing 503 n n N5 H10 VBJ sing 504 n n # _atom_sites.entry_id 8COX _atom_sites.fract_transf_matrix[1][1] 0.016265 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013838 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013728 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NDP A 1 201 204 NDP NDP . D 3 PO4 A 1 202 205 PO4 PO4 . E 3 PO4 A 1 203 206 PO4 PO4 . F 4 CO A 1 204 201 CO CO . G 4 CO B 1 201 201 CO CO . H 2 NDP B 1 202 204 NDP NDP . I 3 PO4 B 1 203 205 PO4 PO4 . J 5 VBJ B 1 204 301 VBJ LIG . K 6 HOH A 1 301 35 HOH HOH . K 6 HOH A 2 302 38 HOH HOH . K 6 HOH A 3 303 31 HOH HOH . K 6 HOH A 4 304 36 HOH HOH . K 6 HOH A 5 305 43 HOH HOH . K 6 HOH A 6 306 22 HOH HOH . K 6 HOH A 7 307 16 HOH HOH . K 6 HOH A 8 308 40 HOH HOH . K 6 HOH A 9 309 10 HOH HOH . K 6 HOH A 10 310 23 HOH HOH . K 6 HOH A 11 311 26 HOH HOH . K 6 HOH A 12 312 8 HOH HOH . K 6 HOH A 13 313 1 HOH HOH . K 6 HOH A 14 314 2 HOH HOH . K 6 HOH A 15 315 18 HOH HOH . K 6 HOH A 16 316 14 HOH HOH . K 6 HOH A 17 317 24 HOH HOH . K 6 HOH A 18 318 20 HOH HOH . K 6 HOH A 19 319 19 HOH HOH . K 6 HOH A 20 320 34 HOH HOH . K 6 HOH A 21 321 44 HOH HOH . L 6 HOH B 1 301 41 HOH HOH . L 6 HOH B 2 302 37 HOH HOH . L 6 HOH B 3 303 27 HOH HOH . L 6 HOH B 4 304 9 HOH HOH . L 6 HOH B 5 305 17 HOH HOH . L 6 HOH B 6 306 4 HOH HOH . L 6 HOH B 7 307 12 HOH HOH . L 6 HOH B 8 308 29 HOH HOH . L 6 HOH B 9 309 7 HOH HOH . L 6 HOH B 10 310 30 HOH HOH . L 6 HOH B 11 311 28 HOH HOH . L 6 HOH B 12 312 32 HOH HOH . L 6 HOH B 13 313 6 HOH HOH . L 6 HOH B 14 314 21 HOH HOH . L 6 HOH B 15 315 11 HOH HOH . L 6 HOH B 16 316 5 HOH HOH . L 6 HOH B 17 317 13 HOH HOH . L 6 HOH B 18 318 39 HOH HOH . L 6 HOH B 19 319 15 HOH HOH . L 6 HOH B 20 320 42 HOH HOH . L 6 HOH B 21 321 33 HOH HOH . L 6 HOH B 22 322 3 HOH HOH . L 6 HOH B 23 323 25 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 VBJ . . . J 5 38.772 -12.531 10.406 1 84.78 ? N1 VBJ 204 B 1 HETATM 2 N N3 VBJ . . . J 5 33.824 -8.658 15.546 1 59.82 ? N3 VBJ 204 B 1 HETATM 3 C C4 VBJ . . . J 5 35.122 -12.029 10.15 1 76.37 ? C4 VBJ 204 B 1 HETATM 4 C C5 VBJ . . . J 5 34.918 -11.016 11.06 1 73 ? C5 VBJ 204 B 1 HETATM 5 C C6 VBJ . . . J 5 35.983 -10.472 11.767 1 78.01 ? C6 VBJ 204 B 1 HETATM 6 C C7 VBJ . . . J 5 35.76 -9.319 12.673 1 71.89 ? C7 VBJ 204 B 1 HETATM 7 C C8 VBJ . . . J 5 34.646 -8.456 14.513 1 68.31 ? C8 VBJ 204 B 1 HETATM 8 C C10 VBJ . . . J 5 36.289 -8.051 12.481 1 69.72 ? C10 VBJ 204 B 1 HETATM 9 C C13 VBJ . . . J 5 39.045 -7.202 9.671 1 71.68 ? C13 VBJ 204 B 1 HETATM 10 C C15 VBJ . . . J 5 39.146 -8.004 8.435 1 84.41 ? C15 VBJ 204 B 1 HETATM 11 C C1 VBJ . . . J 5 39.148 -11.111 8.182 1 97.6 ? C1 VBJ 204 B 1 HETATM 12 C C11 VBJ . . . J 5 37.192 -7.809 11.411 1 72.01 ? C11 VBJ 204 B 1 HETATM 13 C C12 VBJ . . . J 5 38.038 -7.585 10.616 1 75.4 ? C12 VBJ 204 B 1 HETATM 14 C C14 VBJ . . . J 5 38.575 -6.661 8.377 1 84.27 ? C14 VBJ 204 B 1 HETATM 15 C C16 VBJ . . . J 5 37.264 -10.961 11.524 1 89.79 ? C16 VBJ 204 B 1 HETATM 16 C C2 VBJ . . . J 5 37.47 -11.988 10.617 1 88.49 ? C2 VBJ 204 B 1 HETATM 17 C C3 VBJ . . . J 5 36.391 -12.521 9.935 1 86.08 ? C3 VBJ 204 B 1 HETATM 18 C C9 VBJ . . . J 5 35.993 -7.019 13.375 1 63.33 ? C9 VBJ 204 B 1 HETATM 19 N N2 VBJ . . . J 5 34.905 -9.486 13.682 1 75 ? N2 VBJ 204 B 1 HETATM 20 N N4 VBJ . . . J 5 35.163 -7.23 14.388 1 70.84 ? N4 VBJ 204 B 1 HETATM 21 N N5 VBJ . . . J 5 36.487 -5.788 13.208 1 61.1 ? N5 VBJ 204 B 1 HETATM 22 O O1 VBJ . . . J 5 40.437 -10.737 10.396 1 93.92 ? O1 VBJ 204 B 1 HETATM 23 O O2 VBJ . . . J 5 40.895 -12.734 9.109 1 96 ? O2 VBJ 204 B 1 HETATM 24 S S1 VBJ . . . J 5 39.947 -11.789 9.582 1 116.81 ? S1 VBJ 204 B 1 HETATM 25 H H4 VBJ . . . J 5 38.944 -13.307 10.742 1 101.83 ? H4 VBJ 204 B 1 HETATM 26 H H8 VBJ . . . J 5 32.97 -8.795 15.403 1 71.88 ? H8 VBJ 204 B 1 HETATM 27 H H9 VBJ . . . J 5 34.142 -8.654 16.363 1 71.88 ? H9 VBJ 204 B 1 HETATM 28 H H6 VBJ . . . J 5 34.392 -12.402 9.691 1 91.74 ? H6 VBJ 204 B 1 HETATM 29 H H7 VBJ . . . J 5 34.051 -10.669 11.183 1 87.7 ? H7 VBJ 204 B 1 HETATM 30 H H12 VBJ . . . J 5 39.86 -6.839 10.045 1 86.11 ? H12 VBJ 204 B 1 HETATM 31 H H16 VBJ . . . J 5 40.043 -8.14 8.064 1 101.39 ? H16 VBJ 204 B 1 HETATM 32 H H15 VBJ . . . J 5 38.535 -8.764 8.347 1 101.39 ? H15 VBJ 204 B 1 HETATM 33 H H1 VBJ . . . J 5 39.814 -10.794 7.555 1 117.22 ? H1 VBJ 204 B 1 HETATM 34 H H2 VBJ . . . J 5 38.585 -10.374 8.461 1 117.22 ? H2 VBJ 204 B 1 HETATM 35 H H3 VBJ . . . J 5 38.604 -11.795 7.761 1 117.22 ? H3 VBJ 204 B 1 HETATM 36 H H13 VBJ . . . J 5 37.607 -6.578 8.254 1 101.23 ? H13 VBJ 204 B 1 HETATM 37 H H14 VBJ . . . J 5 39.113 -5.949 7.971 1 101.23 ? H14 VBJ 204 B 1 HETATM 38 H H17 VBJ . . . J 5 37.995 -10.591 11.988 1 107.85 ? H17 VBJ 204 B 1 HETATM 39 H H5 VBJ . . . J 5 36.522 -13.238 9.337 1 103.39 ? H5 VBJ 204 B 1 HETATM 40 H H11 VBJ . . . J 5 36.551 -5.449 12.402 1 73.42 ? H11 VBJ 204 B 1 HETATM 41 H H10 VBJ . . . J 5 36.746 -5.324 13.905 1 73.42 ? H10 VBJ 204 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 41 #