data_8CP3 # _model_server_result.job_id MeubsQuZSJIdI2_hwByn9Q _model_server_result.datetime_utc '2024-12-18 13:11:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cp3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8CP3 # _exptl.entry_id 8CP3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8CP3 _cell.length_a 144.81 _cell.length_b 144.81 _cell.length_c 193.64 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CP3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall 'R 3 2"' _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 107 A CYS 96 1_555 B SG CYS 185 B CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 185 A CYS 174 1_555 B SG CYS 107 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A SG CYS 110 A CYS 99 1_555 D S2 BME . A BME 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? covale ? covale2 B SG CYS 110 B CYS 99 1_555 I S2 BME . B BME 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8CP3 _atom_sites.fract_transf_matrix[1][1] 0.006906 _atom_sites.fract_transf_matrix[1][2] 0.003987 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007974 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 301 392 ANP ANP . D 3 BME A 1 302 393 BME BME . E 4 SO4 A 1 303 4 SO4 SO4 . F 4 SO4 A 1 304 6 SO4 SO4 . G 2 ANP B 1 301 392 ANP ANP . H 5 GOL B 1 302 393 GOL GOL . I 3 BME B 1 303 394 BME BME . J 4 SO4 B 1 304 1 SO4 SO4 . K 4 SO4 B 1 305 2 SO4 SO4 . L 4 SO4 B 1 306 3 SO4 SO4 . M 4 SO4 B 1 307 5 SO4 SO4 . N 6 HOH A 1 401 36 HOH HOH . N 6 HOH A 2 402 14 HOH HOH . N 6 HOH A 3 403 28 HOH HOH . N 6 HOH A 4 404 12 HOH HOH . N 6 HOH A 5 405 10 HOH HOH . N 6 HOH A 6 406 15 HOH HOH . N 6 HOH A 7 407 26 HOH HOH . N 6 HOH A 8 408 13 HOH HOH . N 6 HOH A 9 409 27 HOH HOH . N 6 HOH A 10 410 11 HOH HOH . N 6 HOH A 11 411 29 HOH HOH . N 6 HOH A 12 412 17 HOH HOH . N 6 HOH A 13 413 35 HOH HOH . N 6 HOH A 14 414 20 HOH HOH . N 6 HOH A 15 415 31 HOH HOH . O 6 HOH B 1 401 23 HOH HOH . O 6 HOH B 2 402 6 HOH HOH . O 6 HOH B 3 403 24 HOH HOH . O 6 HOH B 4 404 3 HOH HOH . O 6 HOH B 5 405 5 HOH HOH . O 6 HOH B 6 406 30 HOH HOH . O 6 HOH B 7 407 8 HOH HOH . O 6 HOH B 8 408 7 HOH HOH . O 6 HOH B 9 409 25 HOH HOH . O 6 HOH B 10 410 21 HOH HOH . O 6 HOH B 11 411 34 HOH HOH . O 6 HOH B 12 412 2 HOH HOH . O 6 HOH B 13 413 9 HOH HOH . O 6 HOH B 14 414 33 HOH HOH . O 6 HOH B 15 415 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . A . C 2 -80.967 11.231 16.501 0.5 76.79 ? PG ANP 301 A 1 HETATM 2 P PG ANP . B . C 2 -78.58 14.542 17.893 0.5 86.11 ? PG ANP 301 A 1 HETATM 3 O O1G ANP . A . C 2 -81.373 9.883 16.009 0.5 66.74 ? O1G ANP 301 A 1 HETATM 4 O O1G ANP . B . C 2 -78.772 13.364 18.788 0.5 82.9 ? O1G ANP 301 A 1 HETATM 5 O O2G ANP . A . C 2 -82.155 12.213 16.221 0.5 79.9 ? O2G ANP 301 A 1 HETATM 6 O O2G ANP . B . C 2 -79.888 15.417 17.855 0.5 82.7 ? O2G ANP 301 A 1 HETATM 7 O O3G ANP . A . C 2 -80.708 11.096 18.06 0.5 78.72 ? O3G ANP 301 A 1 HETATM 8 O O3G ANP . B . C 2 -77.382 15.43 18.439 0.5 87.84 ? O3G ANP 301 A 1 HETATM 9 P PB ANP . A . C 2 -79.555 13.621 15.779 0.5 90.48 ? PB ANP 301 A 1 HETATM 10 P PB ANP . B . C 2 -79.507 13.327 15.505 0.5 91.53 ? PB ANP 301 A 1 HETATM 11 O O1B ANP . A . C 2 -78.44 13.989 16.705 0.5 89.11 ? O1B ANP 301 A 1 HETATM 12 O O1B ANP . B . C 2 -80.826 13.61 16.154 0.5 86.11 ? O1B ANP 301 A 1 HETATM 13 O O2B ANP . A . C 2 -80.86 14.228 16.363 0.5 87.03 ? O2B ANP 301 A 1 HETATM 14 O O2B ANP . B . C 2 -79.344 11.775 15.42 0.5 86.41 ? O2B ANP 301 A 1 HETATM 15 N N3B ANP . A . C 2 -79.64 11.921 15.686 0.5 86.53 ? N3B ANP 301 A 1 HETATM 16 N N3B ANP . B . C 2 -78.212 14.008 16.333 0.5 90.15 ? N3B ANP 301 A 1 HETATM 17 P PA ANP . A . C 2 -79.582 15.556 13.592 0.5 81.6 ? PA ANP 301 A 1 HETATM 18 P PA ANP . B . C 2 -79.62 15.409 13.581 0.5 81.75 ? PA ANP 301 A 1 HETATM 19 O O1A ANP . A . C 2 -80.1 16.641 14.451 0.5 83.19 -1 O1A ANP 301 A 1 HETATM 20 O O1A ANP . B . C 2 -80.105 16.331 14.627 0.5 83.7 -1 O1A ANP 301 A 1 HETATM 21 O O2A ANP . A . C 2 -78.306 15.902 12.833 0.5 86 ? O2A ANP 301 A 1 HETATM 22 O O2A ANP . B . C 2 -78.278 15.77 12.955 0.5 85.82 ? O2A ANP 301 A 1 HETATM 23 O O3A ANP . A . C 2 -79.243 14.159 14.329 0.5 89.52 ? O3A ANP 301 A 1 HETATM 24 O O3A ANP . B . C 2 -79.496 13.882 14.047 0.5 90.36 ? O3A ANP 301 A 1 HETATM 25 O O5' ANP . A . C 2 -80.703 15.154 12.544 0.5 80.93 ? O5' ANP 301 A 1 HETATM 26 O O5' ANP . B . C 2 -80.726 15.254 12.469 0.5 83.67 ? O5' ANP 301 A 1 HETATM 27 C C5' ANP . . . C 2 -82.114 15.238 12.792 1 76.78 ? C5' ANP 301 A 1 HETATM 28 C C4' ANP . . . C 2 -82.786 13.993 12.265 1 75.54 ? C4' ANP 301 A 1 HETATM 29 O O4' ANP . . . C 2 -82.484 13.776 10.872 1 68.47 ? O4' ANP 301 A 1 HETATM 30 C C3' ANP . . . C 2 -82.39 12.686 12.931 1 76.17 ? C3' ANP 301 A 1 HETATM 31 O O3' ANP . . . C 2 -83.04 12.571 14.186 1 71.3 ? O3' ANP 301 A 1 HETATM 32 C C2' ANP . . . C 2 -82.878 11.663 11.902 1 67.14 ? C2' ANP 301 A 1 HETATM 33 O O2' ANP . . . C 2 -84.294 11.474 11.927 1 63.47 ? O2' ANP 301 A 1 HETATM 34 C C1' ANP . . . C 2 -82.55 12.386 10.589 1 64.22 ? C1' ANP 301 A 1 HETATM 35 N N9 ANP . . . C 2 -81.296 11.962 9.986 1 69 ? N9 ANP 301 A 1 HETATM 36 C C8 ANP . . . C 2 -80.035 12.421 10.256 1 68.1 ? C8 ANP 301 A 1 HETATM 37 N N7 ANP . . . C 2 -79.085 11.819 9.566 1 72.27 ? N7 ANP 301 A 1 HETATM 38 C C5 ANP . . . C 2 -79.785 10.907 8.793 1 70.21 ? C5 ANP 301 A 1 HETATM 39 C C6 ANP . . . C 2 -79.367 9.965 7.823 1 68.53 ? C6 ANP 301 A 1 HETATM 40 N N6 ANP . . . C 2 -78.094 9.789 7.467 1 71.46 ? N6 ANP 301 A 1 HETATM 41 N N1 ANP . . . C 2 -80.319 9.194 7.242 1 65.75 ? N1 ANP 301 A 1 HETATM 42 C C2 ANP . . . C 2 -81.592 9.366 7.603 1 63.47 ? C2 ANP 301 A 1 HETATM 43 N N3 ANP . . . C 2 -82.102 10.222 8.49 1 63.47 ? N3 ANP 301 A 1 HETATM 44 C C4 ANP . . . C 2 -81.145 10.966 9.042 1 70.21 ? C4 ANP 301 A 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 173 _model_server_stats.create_model_time_ms 62 _model_server_stats.query_time_ms 513 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 44 #