data_8CP3 # _model_server_result.job_id utI6hacEBTKMy6eB3P7V-g _model_server_result.datetime_utc '2024-12-18 13:10:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cp3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":301}' # _entry.id 8CP3 # _exptl.entry_id 8CP3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8CP3 _cell.length_a 144.81 _cell.length_b 144.81 _cell.length_c 193.64 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CP3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall 'R 3 2"' _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 107 A CYS 96 1_555 B SG CYS 185 B CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 A SG CYS 185 A CYS 174 1_555 B SG CYS 107 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 A SG CYS 110 A CYS 99 1_555 D S2 BME . A BME 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? covale ? covale2 B SG CYS 110 B CYS 99 1_555 I S2 BME . B BME 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8CP3 _atom_sites.fract_transf_matrix[1][1] 0.006906 _atom_sites.fract_transf_matrix[1][2] 0.003987 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007974 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 301 392 ANP ANP . D 3 BME A 1 302 393 BME BME . E 4 SO4 A 1 303 4 SO4 SO4 . F 4 SO4 A 1 304 6 SO4 SO4 . G 2 ANP B 1 301 392 ANP ANP . H 5 GOL B 1 302 393 GOL GOL . I 3 BME B 1 303 394 BME BME . J 4 SO4 B 1 304 1 SO4 SO4 . K 4 SO4 B 1 305 2 SO4 SO4 . L 4 SO4 B 1 306 3 SO4 SO4 . M 4 SO4 B 1 307 5 SO4 SO4 . N 6 HOH A 1 401 36 HOH HOH . N 6 HOH A 2 402 14 HOH HOH . N 6 HOH A 3 403 28 HOH HOH . N 6 HOH A 4 404 12 HOH HOH . N 6 HOH A 5 405 10 HOH HOH . N 6 HOH A 6 406 15 HOH HOH . N 6 HOH A 7 407 26 HOH HOH . N 6 HOH A 8 408 13 HOH HOH . N 6 HOH A 9 409 27 HOH HOH . N 6 HOH A 10 410 11 HOH HOH . N 6 HOH A 11 411 29 HOH HOH . N 6 HOH A 12 412 17 HOH HOH . N 6 HOH A 13 413 35 HOH HOH . N 6 HOH A 14 414 20 HOH HOH . N 6 HOH A 15 415 31 HOH HOH . O 6 HOH B 1 401 23 HOH HOH . O 6 HOH B 2 402 6 HOH HOH . O 6 HOH B 3 403 24 HOH HOH . O 6 HOH B 4 404 3 HOH HOH . O 6 HOH B 5 405 5 HOH HOH . O 6 HOH B 6 406 30 HOH HOH . O 6 HOH B 7 407 8 HOH HOH . O 6 HOH B 8 408 7 HOH HOH . O 6 HOH B 9 409 25 HOH HOH . O 6 HOH B 10 410 21 HOH HOH . O 6 HOH B 11 411 34 HOH HOH . O 6 HOH B 12 412 2 HOH HOH . O 6 HOH B 13 413 9 HOH HOH . O 6 HOH B 14 414 33 HOH HOH . O 6 HOH B 15 415 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . A . G 2 -54.477 12.655 15.439 0.62 75.63 ? PG ANP 301 B 1 HETATM 2 P PG ANP . B . G 2 -56.607 12.872 18.928 0.38 88.31 ? PG ANP 301 B 1 HETATM 3 O O1G ANP . A . G 2 -55.845 12.425 14.884 0.62 82.57 ? O1G ANP 301 B 1 HETATM 4 O O1G ANP . B . G 2 -57.643 12.937 20.007 0.38 87.08 ? O1G ANP 301 B 1 HETATM 5 O O2G ANP . A . G 2 -53.455 12.327 14.318 0.62 70.99 ? O2G ANP 301 B 1 HETATM 6 O O2G ANP . B . G 2 -56.499 14.304 18.277 0.38 90.9 ? O2G ANP 301 B 1 HETATM 7 O O3G ANP . A . G 2 -54.343 14.192 15.808 0.62 78.05 ? O3G ANP 301 B 1 HETATM 8 O O3G ANP . B . G 2 -55.228 12.425 19.559 0.38 86.15 ? O3G ANP 301 B 1 HETATM 9 P PB ANP . A . G 2 -55.566 10.998 17.608 0.62 89.67 ? PB ANP 301 B 1 HETATM 10 P PB ANP . B . G 2 -55.799 10.942 16.976 0.38 88.55 ? PB ANP 301 B 1 HETATM 11 O O1B ANP . A . G 2 -56.52 10.448 16.583 0.62 86.41 ? O1B ANP 301 B 1 HETATM 12 O O1B ANP . B . G 2 -54.748 11.899 16.503 0.38 84.87 ? O1B ANP 301 B 1 HETATM 13 O O2B ANP . A . G 2 -56.305 12.055 18.474 0.62 86.68 ? O2B ANP 301 B 1 HETATM 14 O O2B ANP . B . G 2 -56.342 10.169 15.729 0.38 81.17 ? O2B ANP 301 B 1 HETATM 15 N N3B ANP . A . G 2 -54.214 11.669 16.816 0.62 83.19 ? N3B ANP 301 B 1 HETATM 16 N N3B ANP . B . G 2 -57.07 11.743 17.749 0.38 86.98 ? N3B ANP 301 B 1 HETATM 17 P PA ANP . A . G 2 -55.708 8.41 18.832 0.62 76.74 ? PA ANP 301 B 1 HETATM 18 P PA ANP . B . G 2 -55.726 8.631 18.57 0.38 78.26 ? PA ANP 301 B 1 HETATM 19 O O1A ANP . A . G 2 -55.682 8.046 20.265 0.62 83.04 -1 O1A ANP 301 B 1 HETATM 20 O O1A ANP . B . G 2 -55.808 8.71 20.042 0.38 82.67 -1 O1A ANP 301 B 1 HETATM 21 O O2A ANP . A . G 2 -57.113 8.295 18.225 0.62 81.66 ? O2A ANP 301 B 1 HETATM 22 O O2A ANP . B . G 2 -57.098 8.384 17.931 0.38 81.9 ? O2A ANP 301 B 1 HETATM 23 O O3A ANP . A . G 2 -55.087 9.87 18.593 0.62 84.77 ? O3A ANP 301 B 1 HETATM 24 O O3A ANP . B . G 2 -55.091 9.957 17.97 0.38 85.08 ? O3A ANP 301 B 1 HETATM 25 O O5' ANP . A . G 2 -54.636 7.506 18.104 0.62 83.49 ? O5' ANP 301 B 1 HETATM 26 O O5' ANP . B . G 2 -54.65 7.539 18.153 0.38 80.23 ? O5' ANP 301 B 1 HETATM 27 C C5' ANP . . . G 2 -53.237 7.803 18.233 1 77.81 ? C5' ANP 301 B 1 HETATM 28 C C4' ANP . . . G 2 -52.556 7.695 16.883 1 75.15 ? C4' ANP 301 B 1 HETATM 29 O O4' ANP . . . G 2 -52.899 6.453 16.239 1 69.51 ? O4' ANP 301 B 1 HETATM 30 C C3' ANP . . . G 2 -52.87 8.764 15.84 1 75.09 ? C3' ANP 301 B 1 HETATM 31 O O3' ANP . . . G 2 -52.146 9.986 16.006 1 70.71 ? O3' ANP 301 B 1 HETATM 32 C C2' ANP . . . G 2 -52.436 8.067 14.55 1 63.47 ? C2' ANP 301 B 1 HETATM 33 O O2' ANP . . . G 2 -51.019 8.077 14.416 1 63.47 ? O2' ANP 301 B 1 HETATM 34 C C1' ANP . . . G 2 -52.808 6.608 14.833 1 66.02 ? C1' ANP 301 B 1 HETATM 35 N N9 ANP . . . G 2 -54.051 6.157 14.218 1 71.19 ? N9 ANP 301 B 1 HETATM 36 C C8 ANP . . . G 2 -55.324 6.225 14.736 1 71.35 ? C8 ANP 301 B 1 HETATM 37 N N7 ANP . . . G 2 -56.25 5.73 13.944 1 74.74 ? N7 ANP 301 B 1 HETATM 38 C C5 ANP . . . G 2 -55.535 5.312 12.826 1 74.48 ? C5 ANP 301 B 1 HETATM 39 C C6 ANP . . . G 2 -55.931 4.701 11.619 1 69.29 ? C6 ANP 301 B 1 HETATM 40 N N6 ANP . . . G 2 -57.189 4.373 11.329 1 65.83 ? N6 ANP 301 B 1 HETATM 41 N N1 ANP . . . G 2 -54.966 4.431 10.708 1 71.31 ? N1 ANP 301 B 1 HETATM 42 C C2 ANP . . . G 2 -53.699 4.738 11.002 1 66.57 ? C2 ANP 301 B 1 HETATM 43 N N3 ANP . . . G 2 -53.213 5.318 12.1 1 68.51 ? N3 ANP 301 B 1 HETATM 44 C C4 ANP . . . G 2 -54.184 5.573 12.981 1 63.47 ? C4 ANP 301 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #