data_8CP4 # _model_server_result.job_id Jk3HjR621qTXQ2wzHGpsWg _model_server_result.datetime_utc '2024-12-18 10:22:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cp4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":302}' # _entry.id 8CP4 # _exptl.entry_id 8CP4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'ADENOSINE MONOPHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CP4 _cell.length_a 186.17 _cell.length_b 212.69 _cell.length_c 196.74 _cell.Z_PDB 56 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CP4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 ? dimeric 2 author_defined_assembly 3 ? dimeric 2 author_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,H,I,J,K 1 1 A,H,I,J,K 1 2 B,D,L,M,N,O,S,T,AA,CA 2 1 C,E,P,Q,R,U,V,BA 3 1 F,G,W,X,Y,Z 4 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 0 0 -98.370011 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 107 A CYS 96 1_555 H FE3 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc2 A SG CYS 110 A CYS 99 1_555 H FE1 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc3 A SG CYS 185 A CYS 174 1_555 H FE4 SF4 . A SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc4 H FE2 SF4 . A SF4 301 1_555 I O1P AMP . A AMP 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc5 B SG CYS 107 B CYS 96 1_555 L FE3 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc6 B SG CYS 110 B CYS 99 1_555 L FE1 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc7 B SG CYS 185 B CYS 174 1_555 L FE4 SF4 . B SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc8 C SG CYS 107 C CYS 96 1_555 P FE3 SF4 . C SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc9 C SG CYS 110 C CYS 99 1_555 P FE1 SF4 . C SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc10 C SG CYS 185 C CYS 174 1_555 P FE4 SF4 . C SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc11 D SG CYS 107 D CYS 96 1_555 S FE3 SF4 . D SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc12 D SG CYS 110 D CYS 99 1_555 S FE1 SF4 . D SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc13 D SG CYS 185 D CYS 174 1_555 S FE4 SF4 . D SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc14 E SG CYS 107 E CYS 96 1_555 U FE3 SF4 . E SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? metalc ? metalc15 E SG CYS 110 E CYS 99 1_555 U FE1 SF4 . E SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.301 ? metalc ? metalc16 E SG CYS 185 E CYS 174 1_555 U FE4 SF4 . E SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc17 F SG CYS 107 F CYS 96 1_555 W FE3 SF4 . F SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc18 F SG CYS 110 F CYS 99 1_555 W FE1 SF4 . F SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc19 F SG CYS 185 F CYS 174 1_555 W FE4 SF4 . F SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc20 G SG CYS 107 G CYS 96 1_555 Y FE3 SF4 . G SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc21 G SG CYS 110 G CYS 99 1_555 Y FE1 SF4 . G SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc22 G SG CYS 185 G CYS 174 1_555 Y FE4 SF4 . G SF4 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id AMP _chem_comp.mon_nstd_flag . _chem_comp.name 'ADENOSINE MONOPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P AMP doub 13 n n P O2P AMP sing 14 n n P O3P AMP sing 15 n n P O5' AMP sing 16 n n O2P HOP2 AMP sing 17 n n O3P HOP3 AMP sing 18 n n O5' C5' AMP sing 19 n n C5' C4' AMP sing 20 n n C5' "H5'1" AMP sing 21 n n C5' "H5'2" AMP sing 22 n n C4' O4' AMP sing 23 n n C4' C3' AMP sing 24 n n C4' H4' AMP sing 25 n n O4' C1' AMP sing 26 n n C3' O3' AMP sing 27 n n C3' C2' AMP sing 28 n n C3' H3' AMP sing 29 n n O3' HO3' AMP sing 30 n n C2' O2' AMP sing 31 n n C2' C1' AMP sing 32 n n C2' H2' AMP sing 33 n n O2' HO2' AMP sing 34 n n C1' N9 AMP sing 35 n n C1' H1' AMP sing 36 n n N9 C8 AMP sing 37 n y N9 C4 AMP sing 38 n y C8 N7 AMP doub 39 n y C8 H8 AMP sing 40 n n N7 C5 AMP sing 41 n y C5 C6 AMP sing 42 n y C5 C4 AMP doub 43 n y C6 N6 AMP sing 44 n n C6 N1 AMP doub 45 n y N6 HN61 AMP sing 46 n n N6 HN62 AMP sing 47 n n N1 C2 AMP sing 48 n y C2 N3 AMP doub 49 n y C2 H2 AMP sing 50 n n N3 C4 AMP sing 51 n y # _atom_sites.entry_id 8CP4 _atom_sites.fract_transf_matrix[1][1] 0.005371 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004702 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005083 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 SF4 A 1 301 301 SF4 SF4 . I 3 AMP A 1 302 302 AMP AMP . J 4 CL A 1 303 7 CL CL . K 4 CL A 1 304 10 CL CL . L 2 SF4 B 1 301 301 SF4 SF4 . M 4 CL B 1 302 1 CL CL . N 4 CL B 1 303 8 CL CL . O 4 CL B 1 304 11 CL CL . P 2 SF4 C 1 301 301 SF4 SF4 . Q 4 CL C 1 302 2 CL CL . R 4 CL C 1 303 9 CL CL . S 2 SF4 D 1 301 301 SF4 SF4 . T 4 CL D 1 302 3 CL CL . U 2 SF4 E 1 301 301 SF4 SF4 . V 4 CL E 1 302 4 CL CL . W 2 SF4 F 1 301 301 SF4 SF4 . X 4 CL F 1 302 5 CL CL . Y 2 SF4 G 1 301 301 SF4 SF4 . Z 4 CL G 1 302 6 CL CL . AA 5 HOH B 1 401 4 HOH HOH . AA 5 HOH B 2 402 3 HOH HOH . BA 5 HOH C 1 401 5 HOH HOH . CA 5 HOH D 1 401 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P AMP . . . I 3 25.22 27.564 -48.753 0.8 157.71 ? P AMP 302 A 1 HETATM 2 O O1P AMP . . . I 3 24.98 28.674 -49.758 0.8 134.42 ? O1P AMP 302 A 1 HETATM 3 O O2P AMP . . . I 3 24.777 27.904 -47.353 0.8 132.05 ? O2P AMP 302 A 1 HETATM 4 O O3P AMP . . . I 3 24.885 26.138 -49.174 0.8 152.72 ? O3P AMP 302 A 1 HETATM 5 O O5' AMP . . . I 3 26.81 27.637 -48.665 0.8 159.1 ? O5' AMP 302 A 1 HETATM 6 C C5' AMP . . . I 3 27.547 28.431 -49.591 0.8 146.09 ? C5' AMP 302 A 1 HETATM 7 C C4' AMP . . . I 3 27.854 29.796 -49.022 0.8 141.56 ? C4' AMP 302 A 1 HETATM 8 O O4' AMP . . . I 3 27.426 29.855 -47.636 0.8 137.72 ? O4' AMP 302 A 1 HETATM 9 C C3' AMP . . . I 3 29.343 30.164 -49.041 0.8 139.51 ? C3' AMP 302 A 1 HETATM 10 O O3' AMP . . . I 3 29.549 31.377 -49.767 0.8 129.57 ? O3' AMP 302 A 1 HETATM 11 C C2' AMP . . . I 3 29.712 30.367 -47.562 0.8 135.43 ? C2' AMP 302 A 1 HETATM 12 O O2' AMP . . . I 3 30.583 31.455 -47.333 0.8 132.09 ? O2' AMP 302 A 1 HETATM 13 C C1' AMP . . . I 3 28.36 30.595 -46.892 0.8 133.41 ? C1' AMP 302 A 1 HETATM 14 N N9 AMP . . . I 3 28.303 30.178 -45.483 0.8 129.11 ? N9 AMP 302 A 1 HETATM 15 C C8 AMP . . . I 3 27.299 29.516 -44.861 0.8 125.15 ? C8 AMP 302 A 1 HETATM 16 N N7 AMP . . . I 3 27.562 29.327 -43.546 0.8 111.51 ? N7 AMP 302 A 1 HETATM 17 C C5 AMP . . . I 3 28.736 29.892 -43.341 0.8 105.69 ? C5 AMP 302 A 1 HETATM 18 C C6 AMP . . . I 3 29.555 30.032 -42.181 0.8 106.02 ? C6 AMP 302 A 1 HETATM 19 N N6 AMP . . . I 3 29.021 29.478 -41.077 0.8 109.35 ? N6 AMP 302 A 1 HETATM 20 N N1 AMP . . . I 3 30.747 30.68 -42.29 0.8 112.22 ? N1 AMP 302 A 1 HETATM 21 C C2 AMP . . . I 3 31.192 31.191 -43.456 0.8 108.36 ? C2 AMP 302 A 1 HETATM 22 N N3 AMP . . . I 3 30.458 31.086 -44.571 0.8 115.7 ? N3 AMP 302 A 1 HETATM 23 C C4 AMP . . . I 3 29.244 30.463 -44.576 0.8 118.6 ? C4 AMP 302 A 1 # _model_server_stats.io_time_ms 86 _model_server_stats.parse_time_ms 98 _model_server_stats.create_model_time_ms 329 _model_server_stats.query_time_ms 1523 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 23 #