data_8CP5 # _model_server_result.job_id O36Lj19clo2Rj-hs6DOEKg _model_server_result.datetime_utc '2024-11-05 19:30:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cp5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 8CP5 # _exptl.entry_id 8CP5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8CP5 _cell.length_a 243.681 _cell.length_b 243.681 _cell.length_c 126.298 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CP5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,V 1 1 B,P,Q,R,S,T,U,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 P N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 8CP5 _atom_sites.fract_transf_matrix[1][1] 0.004104 _atom_sites.fract_transf_matrix[1][2] 0.002369 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 701 701 FAD FAD . D 3 SO4 A 1 702 901 SO4 SO4 . E 3 SO4 A 1 703 904 SO4 SO4 . F 3 SO4 A 1 704 905 SO4 SO4 . G 4 GOL A 1 705 906 GOL GOL . H 5 NAP A 1 706 702 NAP NAP . I 6 PEG A 1 707 907 PEG PEG . J 6 PEG A 1 708 908 PEG PEG . K 3 SO4 A 1 709 7 SO4 SO4 . L 3 SO4 A 1 710 8 SO4 SO4 . M 3 SO4 A 1 711 9 SO4 SO4 . N 3 SO4 A 1 712 10 SO4 SO4 . O 3 SO4 A 1 713 11 SO4 SO4 . P 2 FAD B 1 701 701 FAD FAD . Q 3 SO4 B 1 702 901 SO4 SO4 . R 5 NAP B 1 703 702 NAP NAP . S 6 PEG B 1 704 902 PEG PEG . T 3 SO4 B 1 705 6 SO4 SO4 . U 3 SO4 B 1 706 12 SO4 SO4 . V 7 HOH A 1 801 40 HOH HOH . V 7 HOH A 2 802 14 HOH HOH . V 7 HOH A 3 803 54 HOH HOH . V 7 HOH A 4 804 60 HOH HOH . V 7 HOH A 5 805 72 HOH HOH . V 7 HOH A 6 806 64 HOH HOH . V 7 HOH A 7 807 50 HOH HOH . V 7 HOH A 8 808 73 HOH HOH . V 7 HOH A 9 809 41 HOH HOH . V 7 HOH A 10 810 52 HOH HOH . V 7 HOH A 11 811 15 HOH HOH . V 7 HOH A 12 812 17 HOH HOH . V 7 HOH A 13 813 48 HOH HOH . V 7 HOH A 14 814 23 HOH HOH . V 7 HOH A 15 815 51 HOH HOH . V 7 HOH A 16 816 27 HOH HOH . V 7 HOH A 17 817 25 HOH HOH . V 7 HOH A 18 818 57 HOH HOH . V 7 HOH A 19 819 71 HOH HOH . V 7 HOH A 20 820 26 HOH HOH . V 7 HOH A 21 821 6 HOH HOH . V 7 HOH A 22 822 12 HOH HOH . V 7 HOH A 23 823 62 HOH HOH . V 7 HOH A 24 824 68 HOH HOH . V 7 HOH A 25 825 19 HOH HOH . V 7 HOH A 26 826 45 HOH HOH . V 7 HOH A 27 827 32 HOH HOH . V 7 HOH A 28 828 16 HOH HOH . V 7 HOH A 29 829 59 HOH HOH . V 7 HOH A 30 830 56 HOH HOH . V 7 HOH A 31 831 74 HOH HOH . V 7 HOH A 32 832 18 HOH HOH . V 7 HOH A 33 833 38 HOH HOH . V 7 HOH A 34 834 33 HOH HOH . V 7 HOH A 35 835 37 HOH HOH . V 7 HOH A 36 836 35 HOH HOH . V 7 HOH A 37 837 5 HOH HOH . V 7 HOH A 38 838 30 HOH HOH . V 7 HOH A 39 839 20 HOH HOH . V 7 HOH A 40 840 66 HOH HOH . V 7 HOH A 41 841 1 HOH HOH . V 7 HOH A 42 842 39 HOH HOH . V 7 HOH A 43 843 76 HOH HOH . V 7 HOH A 44 844 13 HOH HOH . W 7 HOH B 1 801 61 HOH HOH . W 7 HOH B 2 802 2 HOH HOH . W 7 HOH B 3 803 24 HOH HOH . W 7 HOH B 4 804 11 HOH HOH . W 7 HOH B 5 805 10 HOH HOH . W 7 HOH B 6 806 67 HOH HOH . W 7 HOH B 7 807 9 HOH HOH . W 7 HOH B 8 808 31 HOH HOH . W 7 HOH B 9 809 34 HOH HOH . W 7 HOH B 10 810 63 HOH HOH . W 7 HOH B 11 811 42 HOH HOH . W 7 HOH B 12 812 3 HOH HOH . W 7 HOH B 13 813 46 HOH HOH . W 7 HOH B 14 814 58 HOH HOH . W 7 HOH B 15 815 21 HOH HOH . W 7 HOH B 16 816 7 HOH HOH . W 7 HOH B 17 817 75 HOH HOH . W 7 HOH B 18 818 70 HOH HOH . W 7 HOH B 19 819 55 HOH HOH . W 7 HOH B 20 820 69 HOH HOH . W 7 HOH B 21 821 36 HOH HOH . W 7 HOH B 22 822 22 HOH HOH . W 7 HOH B 23 823 77 HOH HOH . W 7 HOH B 24 824 28 HOH HOH . W 7 HOH B 25 825 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . C 2 60.13 -7.975 -17.705 1 36.38 ? PA FAD 701 A 1 HETATM 2 O O1A FAD . . . C 2 59.293 -7.007 -16.936 1 33.32 ? O1A FAD 701 A 1 HETATM 3 O O2A FAD . . . C 2 59.811 -9.434 -17.695 1 36.75 ? O2A FAD 701 A 1 HETATM 4 O O5B FAD . . . C 2 60.352 -7.472 -19.199 1 30.44 ? O5B FAD 701 A 1 HETATM 5 C C5B FAD . . . C 2 60.933 -8.289 -20.219 1 32.19 ? C5B FAD 701 A 1 HETATM 6 C C4B FAD . . . C 2 60.418 -7.822 -21.568 1 36.25 ? C4B FAD 701 A 1 HETATM 7 O O4B FAD . . . C 2 61.306 -8.318 -22.602 1 34.13 ? O4B FAD 701 A 1 HETATM 8 C C3B FAD . . . C 2 59.005 -8.289 -21.98 1 40.05 ? C3B FAD 701 A 1 HETATM 9 O O3B FAD . . . C 2 58.239 -7.196 -22.458 1 38.26 ? O3B FAD 701 A 1 HETATM 10 C C2B FAD . . . C 2 59.25 -9.32 -23.091 1 39.57 ? C2B FAD 701 A 1 HETATM 11 O O2B FAD . . . C 2 58.248 -9.397 -24.091 1 43.82 ? O2B FAD 701 A 1 HETATM 12 C C1B FAD . . . C 2 60.547 -8.783 -23.688 1 38.31 ? C1B FAD 701 A 1 HETATM 13 N N9A FAD . . . C 2 61.334 -9.785 -24.378 1 39.56 ? N9A FAD 701 A 1 HETATM 14 C C8A FAD . . . C 2 61.863 -10.953 -23.861 1 37.7 ? C8A FAD 701 A 1 HETATM 15 N N7A FAD . . . C 2 62.511 -11.647 -24.769 1 38.04 ? N7A FAD 701 A 1 HETATM 16 C C5A FAD . . . C 2 62.405 -10.891 -25.931 1 37.02 ? C5A FAD 701 A 1 HETATM 17 C C6A FAD . . . C 2 62.872 -11.094 -27.239 1 37.45 ? C6A FAD 701 A 1 HETATM 18 N N6A FAD . . . C 2 63.575 -12.161 -27.608 1 40.67 ? N6A FAD 701 A 1 HETATM 19 N N1A FAD . . . C 2 62.577 -10.151 -28.16 1 34.64 ? N1A FAD 701 A 1 HETATM 20 C C2A FAD . . . C 2 61.888 -9.072 -27.774 1 36.23 ? C2A FAD 701 A 1 HETATM 21 N N3A FAD . . . C 2 61.369 -8.791 -26.58 1 38.92 ? N3A FAD 701 A 1 HETATM 22 C C4A FAD . . . C 2 61.675 -9.751 -25.699 1 36.64 ? C4A FAD 701 A 1 HETATM 23 N N1 FAD . . . C 2 58.567 -6.617 -8.886 1 42.47 ? N1 FAD 701 A 1 HETATM 24 C C2 FAD . . . C 2 58.303 -5.751 -7.914 1 42.33 ? C2 FAD 701 A 1 HETATM 25 O O2 FAD . . . C 2 59.172 -5.041 -7.496 1 47.61 ? O2 FAD 701 A 1 HETATM 26 N N3 FAD . . . C 2 57.08 -5.638 -7.33 1 44.97 ? N3 FAD 701 A 1 HETATM 27 C C4 FAD . . . C 2 56.01 -6.371 -7.772 1 44.56 ? C4 FAD 701 A 1 HETATM 28 O O4 FAD . . . C 2 54.928 -6.192 -7.254 1 42.74 ? O4 FAD 701 A 1 HETATM 29 C C4X FAD . . . C 2 56.246 -7.323 -8.81 1 42.62 ? C4X FAD 701 A 1 HETATM 30 N N5 FAD . . . C 2 55.271 -8.065 -9.241 1 42.11 ? N5 FAD 701 A 1 HETATM 31 C C5X FAD . . . C 2 55.559 -8.986 -10.218 1 41.77 ? C5X FAD 701 A 1 HETATM 32 C C6 FAD . . . C 2 54.52 -9.801 -10.696 1 38.6 ? C6 FAD 701 A 1 HETATM 33 C C7 FAD . . . C 2 54.722 -10.743 -11.673 1 40.32 ? C7 FAD 701 A 1 HETATM 34 C C7M FAD . . . C 2 53.574 -11.608 -12.138 1 39.89 ? C7M FAD 701 A 1 HETATM 35 C C8 FAD . . . C 2 56.008 -10.892 -12.227 1 43.72 ? C8 FAD 701 A 1 HETATM 36 C C8M FAD . . . C 2 56.261 -11.905 -13.312 1 42.27 ? C8M FAD 701 A 1 HETATM 37 C C9 FAD . . . C 2 57.042 -10.096 -11.778 1 45.09 ? C9 FAD 701 A 1 HETATM 38 C C9A FAD . . . C 2 56.845 -9.134 -10.77 1 43.71 ? C9A FAD 701 A 1 HETATM 39 N N10 FAD . . . C 2 57.848 -8.283 -10.31 1 41.77 ? N10 FAD 701 A 1 HETATM 40 C C10 FAD . . . C 2 57.589 -7.376 -9.321 1 42.85 ? C10 FAD 701 A 1 HETATM 41 C C1' FAD . . . C 2 59.247 -8.45 -10.746 1 41.67 ? C1' FAD 701 A 1 HETATM 42 C C2' FAD . . . C 2 59.565 -8.058 -12.161 1 39.29 ? C2' FAD 701 A 1 HETATM 43 O O2' FAD . . . C 2 60.591 -8.972 -12.573 1 35.34 ? O2' FAD 701 A 1 HETATM 44 C C3' FAD . . . C 2 60.097 -6.621 -12.234 1 34.92 ? C3' FAD 701 A 1 HETATM 45 O O3' FAD . . . C 2 59.243 -5.705 -11.563 1 32.65 ? O3' FAD 701 A 1 HETATM 46 C C4' FAD . . . C 2 60.274 -6.157 -13.671 1 32.35 ? C4' FAD 701 A 1 HETATM 47 O O4' FAD . . . C 2 59.105 -6.5 -14.411 1 26.38 ? O4' FAD 701 A 1 HETATM 48 C C5' FAD . . . C 2 61.503 -6.742 -14.328 1 30.75 ? C5' FAD 701 A 1 HETATM 49 O O5' FAD . . . C 2 61.746 -5.921 -15.5 1 34.91 ? O5' FAD 701 A 1 HETATM 50 P P FAD . . . C 2 62.478 -6.534 -16.775 1 32.71 ? P FAD 701 A 1 HETATM 51 O O1P FAD . . . C 2 63.777 -7.031 -16.222 1 33.1 ? O1P FAD 701 A 1 HETATM 52 O O2P FAD . . . C 2 62.424 -5.585 -17.958 1 37.24 ? O2P FAD 701 A 1 HETATM 53 O O3P FAD . . . C 2 61.579 -7.799 -17.076 1 32.67 ? O3P FAD 701 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 53 #