data_8CP5 # _model_server_result.job_id DysJJnl0Qf5SLt9MytQatA _model_server_result.datetime_utc '2024-11-28 07:51:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cp5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":701}' # _entry.id 8CP5 # _exptl.entry_id 8CP5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8CP5 _cell.length_a 243.681 _cell.length_b 243.681 _cell.length_c 126.298 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CP5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,V 1 1 B,P,Q,R,S,T,U,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 P N N # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 8CP5 _atom_sites.fract_transf_matrix[1][1] 0.004104 _atom_sites.fract_transf_matrix[1][2] 0.002369 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 701 701 FAD FAD . D 3 SO4 A 1 702 901 SO4 SO4 . E 3 SO4 A 1 703 904 SO4 SO4 . F 3 SO4 A 1 704 905 SO4 SO4 . G 4 GOL A 1 705 906 GOL GOL . H 5 NAP A 1 706 702 NAP NAP . I 6 PEG A 1 707 907 PEG PEG . J 6 PEG A 1 708 908 PEG PEG . K 3 SO4 A 1 709 7 SO4 SO4 . L 3 SO4 A 1 710 8 SO4 SO4 . M 3 SO4 A 1 711 9 SO4 SO4 . N 3 SO4 A 1 712 10 SO4 SO4 . O 3 SO4 A 1 713 11 SO4 SO4 . P 2 FAD B 1 701 701 FAD FAD . Q 3 SO4 B 1 702 901 SO4 SO4 . R 5 NAP B 1 703 702 NAP NAP . S 6 PEG B 1 704 902 PEG PEG . T 3 SO4 B 1 705 6 SO4 SO4 . U 3 SO4 B 1 706 12 SO4 SO4 . V 7 HOH A 1 801 40 HOH HOH . V 7 HOH A 2 802 14 HOH HOH . V 7 HOH A 3 803 54 HOH HOH . V 7 HOH A 4 804 60 HOH HOH . V 7 HOH A 5 805 72 HOH HOH . V 7 HOH A 6 806 64 HOH HOH . V 7 HOH A 7 807 50 HOH HOH . V 7 HOH A 8 808 73 HOH HOH . V 7 HOH A 9 809 41 HOH HOH . V 7 HOH A 10 810 52 HOH HOH . V 7 HOH A 11 811 15 HOH HOH . V 7 HOH A 12 812 17 HOH HOH . V 7 HOH A 13 813 48 HOH HOH . V 7 HOH A 14 814 23 HOH HOH . V 7 HOH A 15 815 51 HOH HOH . V 7 HOH A 16 816 27 HOH HOH . V 7 HOH A 17 817 25 HOH HOH . V 7 HOH A 18 818 57 HOH HOH . V 7 HOH A 19 819 71 HOH HOH . V 7 HOH A 20 820 26 HOH HOH . V 7 HOH A 21 821 6 HOH HOH . V 7 HOH A 22 822 12 HOH HOH . V 7 HOH A 23 823 62 HOH HOH . V 7 HOH A 24 824 68 HOH HOH . V 7 HOH A 25 825 19 HOH HOH . V 7 HOH A 26 826 45 HOH HOH . V 7 HOH A 27 827 32 HOH HOH . V 7 HOH A 28 828 16 HOH HOH . V 7 HOH A 29 829 59 HOH HOH . V 7 HOH A 30 830 56 HOH HOH . V 7 HOH A 31 831 74 HOH HOH . V 7 HOH A 32 832 18 HOH HOH . V 7 HOH A 33 833 38 HOH HOH . V 7 HOH A 34 834 33 HOH HOH . V 7 HOH A 35 835 37 HOH HOH . V 7 HOH A 36 836 35 HOH HOH . V 7 HOH A 37 837 5 HOH HOH . V 7 HOH A 38 838 30 HOH HOH . V 7 HOH A 39 839 20 HOH HOH . V 7 HOH A 40 840 66 HOH HOH . V 7 HOH A 41 841 1 HOH HOH . V 7 HOH A 42 842 39 HOH HOH . V 7 HOH A 43 843 76 HOH HOH . V 7 HOH A 44 844 13 HOH HOH . W 7 HOH B 1 801 61 HOH HOH . W 7 HOH B 2 802 2 HOH HOH . W 7 HOH B 3 803 24 HOH HOH . W 7 HOH B 4 804 11 HOH HOH . W 7 HOH B 5 805 10 HOH HOH . W 7 HOH B 6 806 67 HOH HOH . W 7 HOH B 7 807 9 HOH HOH . W 7 HOH B 8 808 31 HOH HOH . W 7 HOH B 9 809 34 HOH HOH . W 7 HOH B 10 810 63 HOH HOH . W 7 HOH B 11 811 42 HOH HOH . W 7 HOH B 12 812 3 HOH HOH . W 7 HOH B 13 813 46 HOH HOH . W 7 HOH B 14 814 58 HOH HOH . W 7 HOH B 15 815 21 HOH HOH . W 7 HOH B 16 816 7 HOH HOH . W 7 HOH B 17 817 75 HOH HOH . W 7 HOH B 18 818 70 HOH HOH . W 7 HOH B 19 819 55 HOH HOH . W 7 HOH B 20 820 69 HOH HOH . W 7 HOH B 21 821 36 HOH HOH . W 7 HOH B 22 822 22 HOH HOH . W 7 HOH B 23 823 77 HOH HOH . W 7 HOH B 24 824 28 HOH HOH . W 7 HOH B 25 825 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . P 2 44.835 37.312 1.4 1 44.02 ? PA FAD 701 B 1 HETATM 2 O O1A FAD . . . P 2 44.58 37.999 2.694 1 41.18 ? O1A FAD 701 B 1 HETATM 3 O O2A FAD . . . P 2 43.817 37.137 0.333 1 45.53 ? O2A FAD 701 B 1 HETATM 4 O O5B FAD . . . P 2 46.154 37.874 0.749 1 41.77 ? O5B FAD 701 B 1 HETATM 5 C C5B FAD . . . P 2 46.42 37.512 -0.605 1 41.84 ? C5B FAD 701 B 1 HETATM 6 C C4B FAD . . . P 2 47.236 38.624 -1.214 1 43.68 ? C4B FAD 701 B 1 HETATM 7 O O4B FAD . . . P 2 47.971 38.108 -2.352 1 45.23 ? O4B FAD 701 B 1 HETATM 8 C C3B FAD . . . P 2 46.422 39.813 -1.731 1 44.04 ? C3B FAD 701 B 1 HETATM 9 O O3B FAD . . . P 2 46.939 40.98 -1.119 1 45.32 ? O3B FAD 701 B 1 HETATM 10 C C2B FAD . . . P 2 46.637 39.78 -3.247 1 47.39 ? C2B FAD 701 B 1 HETATM 11 O O2B FAD . . . P 2 46.653 41.086 -3.781 1 49.69 ? O2B FAD 701 B 1 HETATM 12 C C1B FAD . . . P 2 47.991 39.076 -3.361 1 46.58 ? C1B FAD 701 B 1 HETATM 13 N N9A FAD . . . P 2 48.208 38.387 -4.63 1 44.83 ? N9A FAD 701 B 1 HETATM 14 C C8A FAD . . . P 2 47.472 37.347 -5.147 1 44.56 ? C8A FAD 701 B 1 HETATM 15 N N7A FAD . . . P 2 47.902 36.982 -6.34 1 47.82 ? N7A FAD 701 B 1 HETATM 16 C C5A FAD . . . P 2 48.963 37.837 -6.618 1 39.73 ? C5A FAD 701 B 1 HETATM 17 C C6A FAD . . . P 2 49.822 37.968 -7.727 1 43.91 ? C6A FAD 701 B 1 HETATM 18 N N6A FAD . . . P 2 49.734 37.226 -8.825 1 48.56 ? N6A FAD 701 B 1 HETATM 19 N N1A FAD . . . P 2 50.773 38.934 -7.675 1 47.93 ? N1A FAD 701 B 1 HETATM 20 C C2A FAD . . . P 2 50.846 39.693 -6.57 1 45.44 ? C2A FAD 701 B 1 HETATM 21 N N3A FAD . . . P 2 50.081 39.662 -5.479 1 42.92 ? N3A FAD 701 B 1 HETATM 22 C C4A FAD . . . P 2 49.153 38.703 -5.568 1 38.11 ? C4A FAD 701 B 1 HETATM 23 N N1 FAD . . . P 2 39.572 35.238 8.806 1 54.66 ? N1 FAD 701 B 1 HETATM 24 C C2 FAD . . . P 2 39.343 35.336 10.121 1 55.33 ? C2 FAD 701 B 1 HETATM 25 O O2 FAD . . . P 2 39.913 34.606 10.917 1 58.08 ? O2 FAD 701 B 1 HETATM 26 N N3 FAD . . . P 2 38.474 36.235 10.631 1 59.84 ? N3 FAD 701 B 1 HETATM 27 C C4 FAD . . . P 2 37.777 37.103 9.832 1 55.69 ? C4 FAD 701 B 1 HETATM 28 O O4 FAD . . . P 2 37.014 37.893 10.344 1 51.66 ? O4 FAD 701 B 1 HETATM 29 C C4X FAD . . . P 2 37.959 37.015 8.439 1 56.4 ? C4X FAD 701 B 1 HETATM 30 N N5 FAD . . . P 2 37.281 37.818 7.662 1 50.74 ? N5 FAD 701 B 1 HETATM 31 C C5X FAD . . . P 2 37.482 37.705 6.315 1 48.25 ? C5X FAD 701 B 1 HETATM 32 C C6 FAD . . . P 2 36.754 38.56 5.463 1 44.6 ? C6 FAD 701 B 1 HETATM 33 C C7 FAD . . . P 2 36.899 38.51 4.094 1 44.13 ? C7 FAD 701 B 1 HETATM 34 C C7M FAD . . . P 2 36.107 39.436 3.209 1 42.67 ? C7M FAD 701 B 1 HETATM 35 C C8 FAD . . . P 2 37.796 37.582 3.531 1 45.53 ? C8 FAD 701 B 1 HETATM 36 C C8M FAD . . . P 2 37.967 37.496 2.039 1 47.69 ? C8M FAD 701 B 1 HETATM 37 C C9 FAD . . . P 2 38.508 36.729 4.351 1 47.91 ? C9 FAD 701 B 1 HETATM 38 C C9A FAD . . . P 2 38.379 36.769 5.754 1 48.05 ? C9A FAD 701 B 1 HETATM 39 N N10 FAD . . . P 2 39.1 35.935 6.616 1 53.43 ? N10 FAD 701 B 1 HETATM 40 C C10 FAD . . . P 2 38.904 36.026 7.987 1 57.63 ? C10 FAD 701 B 1 HETATM 41 C C1' FAD . . . P 2 40.006 34.876 6.094 1 53.89 ? C1' FAD 701 B 1 HETATM 42 C C2' FAD . . . P 2 41.228 35.342 5.303 1 46.63 ? C2' FAD 701 B 1 HETATM 43 O O2' FAD . . . P 2 41.449 34.427 4.25 1 41.78 ? O2' FAD 701 B 1 HETATM 44 C C3' FAD . . . P 2 42.468 35.331 6.177 1 42.89 ? C3' FAD 701 B 1 HETATM 45 O O3' FAD . . . P 2 42.14 36.057 7.328 1 45.82 ? O3' FAD 701 B 1 HETATM 46 C C4' FAD . . . P 2 43.736 35.877 5.513 1 40.57 ? C4' FAD 701 B 1 HETATM 47 O O4' FAD . . . P 2 43.465 37.089 4.826 1 37.61 ? O4' FAD 701 B 1 HETATM 48 C C5' FAD . . . P 2 44.363 34.945 4.498 1 39.97 ? C5' FAD 701 B 1 HETATM 49 O O5' FAD . . . P 2 45.74 35.37 4.26 1 40.53 ? O5' FAD 701 B 1 HETATM 50 P P FAD . . . P 2 46.391 35.227 2.812 1 43.01 ? P FAD 701 B 1 HETATM 51 O O1P FAD . . . P 2 46.471 33.768 2.462 1 46.03 ? O1P FAD 701 B 1 HETATM 52 O O2P FAD . . . P 2 47.628 36.101 2.731 1 47.54 ? O2P FAD 701 B 1 HETATM 53 O O3P FAD . . . P 2 45.29 35.835 1.821 1 47 ? O3P FAD 701 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 53 #