data_8CP5 # _model_server_result.job_id lj0lTX0rld-ZiGKBE1JYHQ _model_server_result.datetime_utc '2024-11-05 19:36:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cp5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":705}' # _entry.id 8CP5 # _exptl.entry_id 8CP5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8CP5 _cell.length_a 243.681 _cell.length_b 243.681 _cell.length_c 126.298 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CP5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,M,N,O,V 1 1 B,P,Q,R,S,T,U,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 220 n n C1 C2 GOL sing 221 n n C1 H11 GOL sing 222 n n C1 H12 GOL sing 223 n n O1 HO1 GOL sing 224 n n C2 O2 GOL sing 225 n n C2 C3 GOL sing 226 n n C2 H2 GOL sing 227 n n O2 HO2 GOL sing 228 n n C3 O3 GOL sing 229 n n C3 H31 GOL sing 230 n n C3 H32 GOL sing 231 n n O3 HO3 GOL sing 232 n n # _atom_sites.entry_id 8CP5 _atom_sites.fract_transf_matrix[1][1] 0.004104 _atom_sites.fract_transf_matrix[1][2] 0.002369 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004739 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007918 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 701 701 FAD FAD . D 3 SO4 A 1 702 901 SO4 SO4 . E 3 SO4 A 1 703 904 SO4 SO4 . F 3 SO4 A 1 704 905 SO4 SO4 . G 4 GOL A 1 705 906 GOL GOL . H 5 NAP A 1 706 702 NAP NAP . I 6 PEG A 1 707 907 PEG PEG . J 6 PEG A 1 708 908 PEG PEG . K 3 SO4 A 1 709 7 SO4 SO4 . L 3 SO4 A 1 710 8 SO4 SO4 . M 3 SO4 A 1 711 9 SO4 SO4 . N 3 SO4 A 1 712 10 SO4 SO4 . O 3 SO4 A 1 713 11 SO4 SO4 . P 2 FAD B 1 701 701 FAD FAD . Q 3 SO4 B 1 702 901 SO4 SO4 . R 5 NAP B 1 703 702 NAP NAP . S 6 PEG B 1 704 902 PEG PEG . T 3 SO4 B 1 705 6 SO4 SO4 . U 3 SO4 B 1 706 12 SO4 SO4 . V 7 HOH A 1 801 40 HOH HOH . V 7 HOH A 2 802 14 HOH HOH . V 7 HOH A 3 803 54 HOH HOH . V 7 HOH A 4 804 60 HOH HOH . V 7 HOH A 5 805 72 HOH HOH . V 7 HOH A 6 806 64 HOH HOH . V 7 HOH A 7 807 50 HOH HOH . V 7 HOH A 8 808 73 HOH HOH . V 7 HOH A 9 809 41 HOH HOH . V 7 HOH A 10 810 52 HOH HOH . V 7 HOH A 11 811 15 HOH HOH . V 7 HOH A 12 812 17 HOH HOH . V 7 HOH A 13 813 48 HOH HOH . V 7 HOH A 14 814 23 HOH HOH . V 7 HOH A 15 815 51 HOH HOH . V 7 HOH A 16 816 27 HOH HOH . V 7 HOH A 17 817 25 HOH HOH . V 7 HOH A 18 818 57 HOH HOH . V 7 HOH A 19 819 71 HOH HOH . V 7 HOH A 20 820 26 HOH HOH . V 7 HOH A 21 821 6 HOH HOH . V 7 HOH A 22 822 12 HOH HOH . V 7 HOH A 23 823 62 HOH HOH . V 7 HOH A 24 824 68 HOH HOH . V 7 HOH A 25 825 19 HOH HOH . V 7 HOH A 26 826 45 HOH HOH . V 7 HOH A 27 827 32 HOH HOH . V 7 HOH A 28 828 16 HOH HOH . V 7 HOH A 29 829 59 HOH HOH . V 7 HOH A 30 830 56 HOH HOH . V 7 HOH A 31 831 74 HOH HOH . V 7 HOH A 32 832 18 HOH HOH . V 7 HOH A 33 833 38 HOH HOH . V 7 HOH A 34 834 33 HOH HOH . V 7 HOH A 35 835 37 HOH HOH . V 7 HOH A 36 836 35 HOH HOH . V 7 HOH A 37 837 5 HOH HOH . V 7 HOH A 38 838 30 HOH HOH . V 7 HOH A 39 839 20 HOH HOH . V 7 HOH A 40 840 66 HOH HOH . V 7 HOH A 41 841 1 HOH HOH . V 7 HOH A 42 842 39 HOH HOH . V 7 HOH A 43 843 76 HOH HOH . V 7 HOH A 44 844 13 HOH HOH . W 7 HOH B 1 801 61 HOH HOH . W 7 HOH B 2 802 2 HOH HOH . W 7 HOH B 3 803 24 HOH HOH . W 7 HOH B 4 804 11 HOH HOH . W 7 HOH B 5 805 10 HOH HOH . W 7 HOH B 6 806 67 HOH HOH . W 7 HOH B 7 807 9 HOH HOH . W 7 HOH B 8 808 31 HOH HOH . W 7 HOH B 9 809 34 HOH HOH . W 7 HOH B 10 810 63 HOH HOH . W 7 HOH B 11 811 42 HOH HOH . W 7 HOH B 12 812 3 HOH HOH . W 7 HOH B 13 813 46 HOH HOH . W 7 HOH B 14 814 58 HOH HOH . W 7 HOH B 15 815 21 HOH HOH . W 7 HOH B 16 816 7 HOH HOH . W 7 HOH B 17 817 75 HOH HOH . W 7 HOH B 18 818 70 HOH HOH . W 7 HOH B 19 819 55 HOH HOH . W 7 HOH B 20 820 69 HOH HOH . W 7 HOH B 21 821 36 HOH HOH . W 7 HOH B 22 822 22 HOH HOH . W 7 HOH B 23 823 77 HOH HOH . W 7 HOH B 24 824 28 HOH HOH . W 7 HOH B 25 825 65 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 35.145 -26.689 6.006 1 59.19 ? C1 GOL 705 A 1 HETATM 2 O O1 GOL . . . G 4 34.981 -25.949 4.798 1 42.84 ? O1 GOL 705 A 1 HETATM 3 C C2 GOL . . . G 4 33.973 -27.631 6.234 1 65.06 ? C2 GOL 705 A 1 HETATM 4 O O2 GOL . . . G 4 33.765 -28.368 5.025 1 54 ? O2 GOL 705 A 1 HETATM 5 C C3 GOL . . . G 4 34.057 -28.554 7.469 1 67.87 ? C3 GOL 705 A 1 HETATM 6 O O3 GOL . . . G 4 35.372 -28.864 7.963 1 62.07 ? O3 GOL 705 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #