data_8CP9 # _model_server_result.job_id jw8zhPbtGLtQOSeV0lM3-w _model_server_result.datetime_utc '2024-11-18 11:47:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cp9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 8CP9 # _exptl.entry_id 8CP9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8CP9 _cell.length_a 89.94 _cell.length_b 89.94 _cell.length_c 176.958 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CP9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 19 A ASP 14 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc2 C O1B ANP . A ANP 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc3 C O2B ANP . A ANP 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc4 C O2A ANP . A ANP 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc5 D MG MG . A MG 402 1_555 G O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? metalc ? metalc6 D MG MG . A MG 402 1_555 G O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc7 D MG MG . A MG 402 1_555 G O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc8 B OD1 ASP 19 B ASP 14 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc9 E O1B ANP . B ANP 401 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.222 ? metalc ? metalc10 E O2A ANP . B ANP 401 1_555 F MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc11 F MG MG . B MG 402 1_555 H O HOH . B HOH 518 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc12 F MG MG . B MG 402 1_555 H O HOH . B HOH 537 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8CP9 _atom_sites.fract_transf_matrix[1][1] 0.011119 _atom_sites.fract_transf_matrix[1][2] 0.006419 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012839 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005651 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 401 364 ANP ANP . D 3 MG A 1 402 1 MG MG . E 2 ANP B 1 401 364 ANP ANP . F 3 MG B 1 402 2 MG MG . G 4 HOH A 1 501 89 HOH HOH . G 4 HOH A 2 502 35 HOH HOH . G 4 HOH A 3 503 75 HOH HOH . G 4 HOH A 4 504 123 HOH HOH . G 4 HOH A 5 505 55 HOH HOH . G 4 HOH A 6 506 121 HOH HOH . G 4 HOH A 7 507 56 HOH HOH . G 4 HOH A 8 508 58 HOH HOH . G 4 HOH A 9 509 70 HOH HOH . G 4 HOH A 10 510 40 HOH HOH . G 4 HOH A 11 511 90 HOH HOH . G 4 HOH A 12 512 111 HOH HOH . G 4 HOH A 13 513 69 HOH HOH . G 4 HOH A 14 514 112 HOH HOH . G 4 HOH A 15 515 119 HOH HOH . G 4 HOH A 16 516 115 HOH HOH . G 4 HOH A 17 517 95 HOH HOH . G 4 HOH A 18 518 49 HOH HOH . G 4 HOH A 19 519 92 HOH HOH . G 4 HOH A 20 520 28 HOH HOH . G 4 HOH A 21 521 83 HOH HOH . G 4 HOH A 22 522 47 HOH HOH . G 4 HOH A 23 523 59 HOH HOH . G 4 HOH A 24 524 107 HOH HOH . G 4 HOH A 25 525 79 HOH HOH . G 4 HOH A 26 526 29 HOH HOH . G 4 HOH A 27 527 109 HOH HOH . G 4 HOH A 28 528 45 HOH HOH . G 4 HOH A 29 529 81 HOH HOH . G 4 HOH A 30 530 9 HOH HOH . G 4 HOH A 31 531 36 HOH HOH . G 4 HOH A 32 532 78 HOH HOH . G 4 HOH A 33 533 105 HOH HOH . G 4 HOH A 34 534 52 HOH HOH . G 4 HOH A 35 535 38 HOH HOH . G 4 HOH A 36 536 61 HOH HOH . G 4 HOH A 37 537 31 HOH HOH . G 4 HOH A 38 538 46 HOH HOH . G 4 HOH A 39 539 76 HOH HOH . G 4 HOH A 40 540 16 HOH HOH . G 4 HOH A 41 541 101 HOH HOH . G 4 HOH A 42 542 88 HOH HOH . G 4 HOH A 43 543 4 HOH HOH . G 4 HOH A 44 544 99 HOH HOH . G 4 HOH A 45 545 68 HOH HOH . G 4 HOH A 46 546 94 HOH HOH . G 4 HOH A 47 547 15 HOH HOH . G 4 HOH A 48 548 96 HOH HOH . G 4 HOH A 49 549 73 HOH HOH . G 4 HOH A 50 550 98 HOH HOH . G 4 HOH A 51 551 34 HOH HOH . G 4 HOH A 52 552 51 HOH HOH . G 4 HOH A 53 553 85 HOH HOH . G 4 HOH A 54 554 23 HOH HOH . G 4 HOH A 55 555 17 HOH HOH . G 4 HOH A 56 556 48 HOH HOH . G 4 HOH A 57 557 106 HOH HOH . G 4 HOH A 58 558 39 HOH HOH . G 4 HOH A 59 559 37 HOH HOH . G 4 HOH A 60 560 27 HOH HOH . G 4 HOH A 61 561 91 HOH HOH . G 4 HOH A 62 562 66 HOH HOH . H 4 HOH B 1 501 80 HOH HOH . H 4 HOH B 2 502 14 HOH HOH . H 4 HOH B 3 503 77 HOH HOH . H 4 HOH B 4 504 108 HOH HOH . H 4 HOH B 5 505 1 HOH HOH . H 4 HOH B 6 506 3 HOH HOH . H 4 HOH B 7 507 53 HOH HOH . H 4 HOH B 8 508 74 HOH HOH . H 4 HOH B 9 509 64 HOH HOH . H 4 HOH B 10 510 25 HOH HOH . H 4 HOH B 11 511 71 HOH HOH . H 4 HOH B 12 512 30 HOH HOH . H 4 HOH B 13 513 19 HOH HOH . H 4 HOH B 14 514 6 HOH HOH . H 4 HOH B 15 515 114 HOH HOH . H 4 HOH B 16 516 13 HOH HOH . H 4 HOH B 17 517 26 HOH HOH . H 4 HOH B 18 518 122 HOH HOH . H 4 HOH B 19 519 86 HOH HOH . H 4 HOH B 20 520 22 HOH HOH . H 4 HOH B 21 521 21 HOH HOH . H 4 HOH B 22 522 5 HOH HOH . H 4 HOH B 23 523 8 HOH HOH . H 4 HOH B 24 524 87 HOH HOH . H 4 HOH B 25 525 57 HOH HOH . H 4 HOH B 26 526 84 HOH HOH . H 4 HOH B 27 527 54 HOH HOH . H 4 HOH B 28 528 116 HOH HOH . H 4 HOH B 29 529 60 HOH HOH . H 4 HOH B 30 530 93 HOH HOH . H 4 HOH B 31 531 62 HOH HOH . H 4 HOH B 32 532 10 HOH HOH . H 4 HOH B 33 533 72 HOH HOH . H 4 HOH B 34 534 50 HOH HOH . H 4 HOH B 35 535 63 HOH HOH . H 4 HOH B 36 536 113 HOH HOH . H 4 HOH B 37 537 120 HOH HOH . H 4 HOH B 38 538 44 HOH HOH . H 4 HOH B 39 539 43 HOH HOH . H 4 HOH B 40 540 104 HOH HOH . H 4 HOH B 41 541 97 HOH HOH . H 4 HOH B 42 542 24 HOH HOH . H 4 HOH B 43 543 20 HOH HOH . H 4 HOH B 44 544 18 HOH HOH . H 4 HOH B 45 545 67 HOH HOH . H 4 HOH B 46 546 65 HOH HOH . H 4 HOH B 47 547 103 HOH HOH . H 4 HOH B 48 548 41 HOH HOH . H 4 HOH B 49 549 7 HOH HOH . H 4 HOH B 50 550 32 HOH HOH . H 4 HOH B 51 551 2 HOH HOH . H 4 HOH B 52 552 110 HOH HOH . H 4 HOH B 53 553 102 HOH HOH . H 4 HOH B 54 554 12 HOH HOH . H 4 HOH B 55 555 11 HOH HOH . H 4 HOH B 56 556 42 HOH HOH . H 4 HOH B 57 557 82 HOH HOH . H 4 HOH B 58 558 118 HOH HOH . H 4 HOH B 59 559 117 HOH HOH . H 4 HOH B 60 560 33 HOH HOH . H 4 HOH B 61 561 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . E 2 24.011 -23.043 38.305 1 62.76 0 PG ANP 401 B 1 HETATM 2 O O1G ANP . . . E 2 23.707 -23.212 39.723 1 61.87 0 O1G ANP 401 B 1 HETATM 3 O O2G ANP . . . E 2 22.992 -23.667 37.304 1 55.4 0 O2G ANP 401 B 1 HETATM 4 O O3G ANP . . . E 2 24.182 -21.546 37.903 1 66.11 0 O3G ANP 401 B 1 HETATM 5 P PB ANP . . . E 2 26.881 -23.217 37.979 1 47.15 0 PB ANP 401 B 1 HETATM 6 O O1B ANP . . . E 2 27.782 -23.775 36.968 1 51.3 0 O1B ANP 401 B 1 HETATM 7 O O2B ANP . . . E 2 26.84 -21.676 37.883 1 45.96 0 O2B ANP 401 B 1 HETATM 8 N N3B ANP . . . E 2 25.377 -23.847 37.898 1 54.4 0 N3B ANP 401 B 1 HETATM 9 P PA ANP . . . E 2 27.993 -25.057 39.903 1 43.35 0 PA ANP 401 B 1 HETATM 10 O O1A ANP . . . E 2 26.919 -25.706 40.684 1 47.89 0 O1A ANP 401 B 1 HETATM 11 O O2A ANP . . . E 2 28.701 -25.818 38.821 1 47.6 0 O2A ANP 401 B 1 HETATM 12 O O3A ANP . . . E 2 27.495 -23.595 39.398 1 42.22 0 O3A ANP 401 B 1 HETATM 13 O O5' ANP . . . E 2 29.092 -24.587 40.977 1 46.83 0 O5' ANP 401 B 1 HETATM 14 C C5' ANP . . . E 2 30.353 -24.05 40.541 1 47.73 0 C5' ANP 401 B 1 HETATM 15 C C4' ANP . . . E 2 30.957 -23.237 41.668 1 50.03 0 C4' ANP 401 B 1 HETATM 16 O O4' ANP . . . E 2 31.076 -24.017 42.882 1 49.96 0 O4' ANP 401 B 1 HETATM 17 C C3' ANP . . . E 2 32.374 -22.783 41.387 1 46.52 0 C3' ANP 401 B 1 HETATM 18 O O3' ANP . . . E 2 32.445 -21.665 40.492 1 46.36 0 O3' ANP 401 B 1 HETATM 19 C C2' ANP . . . E 2 32.867 -22.456 42.771 1 49.79 0 C2' ANP 401 B 1 HETATM 20 O O2' ANP . . . E 2 32.442 -21.13 43.134 1 52.02 0 O2' ANP 401 B 1 HETATM 21 C C1' ANP . . . E 2 32.126 -23.46 43.655 1 48.05 0 C1' ANP 401 B 1 HETATM 22 N N9 ANP . . . E 2 33.036 -24.488 44.104 1 47.65 0 N9 ANP 401 B 1 HETATM 23 C C8 ANP . . . E 2 33.3 -25.707 43.525 1 50.1 0 C8 ANP 401 B 1 HETATM 24 N N7 ANP . . . E 2 34.22 -26.424 44.183 1 49.05 0 N7 ANP 401 B 1 HETATM 25 C C5 ANP . . . E 2 34.586 -25.603 45.244 1 49.9 0 C5 ANP 401 B 1 HETATM 26 C C6 ANP . . . E 2 35.5 -25.744 46.293 1 52.03 0 C6 ANP 401 B 1 HETATM 27 N N6 ANP . . . E 2 36.233 -26.86 46.436 1 49.82 0 N6 ANP 401 B 1 HETATM 28 N N1 ANP . . . E 2 35.615 -24.712 47.177 1 55.95 0 N1 ANP 401 B 1 HETATM 29 C C2 ANP . . . E 2 34.869 -23.617 47.011 1 52.89 0 C2 ANP 401 B 1 HETATM 30 N N3 ANP . . . E 2 33.975 -23.351 46.067 1 52.06 0 N3 ANP 401 B 1 HETATM 31 C C4 ANP . . . E 2 33.879 -24.398 45.19 1 47.9 0 C4 ANP 401 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 31 #