data_8CPB # _model_server_result.job_id GlOXSVq08M8wWrV0vIbjsw _model_server_result.datetime_utc '2024-11-29 05:51:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cpb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":402}' # _entry.id 8CPB # _exptl.entry_id 8CPB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 275.255 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8CPB _cell.length_a 90.67 _cell.length_b 90.67 _cell.length_c 171.686 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CPB _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 H N N # _chem_comp.formula 'C11 H17 N O7' _chem_comp.formula_weight 275.255 _chem_comp.id AH0 _chem_comp.mon_nstd_flag . _chem_comp.name '2-(2-ACETYLAMINO-4-HYDROXY-6,8-DIOXA-BICYCLO[3.2.1]OCT-3-YLOXY)-PROPIONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '1,6-anhydro-N-acetylmuramic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 AH0 sing 1 n n C1 O5 AH0 sing 2 n n C1 O6 AH0 sing 3 n n C1 H1 AH0 sing 4 n n C2 N2 AH0 sing 5 n n C2 C3 AH0 sing 6 n n C2 H2 AH0 sing 7 n n N2 C7 AH0 sing 8 n n N2 HN2 AH0 sing 9 n n C7 O7 AH0 doub 10 n n C7 C8 AH0 sing 11 n n C8 H81 AH0 sing 12 n n C8 H82 AH0 sing 13 n n C8 H83 AH0 sing 14 n n C3 O3 AH0 sing 15 n n C3 C4 AH0 sing 16 n n C3 H3 AH0 sing 17 n n O3 CA AH0 sing 18 n n C4 O4 AH0 sing 19 n n C4 C5 AH0 sing 20 n n C4 H4 AH0 sing 21 n n O4 HO4 AH0 sing 22 n n C5 O5 AH0 sing 23 n n C5 C6 AH0 sing 24 n n C5 H5 AH0 sing 25 n n C6 O6 AH0 sing 26 n n C6 H61 AH0 sing 27 n n C6 H62 AH0 sing 28 n n CA CB AH0 sing 29 n n CA C AH0 sing 30 n n CA HA AH0 sing 31 n n CB HB1 AH0 sing 32 n n CB HB2 AH0 sing 33 n n CB HB3 AH0 sing 34 n n C O AH0 doub 35 n n C OXT AH0 sing 36 n n OXT HXT AH0 sing 37 n n # _atom_sites.entry_id 8CPB _atom_sites.fract_transf_matrix[1][1] 0.011029 _atom_sites.fract_transf_matrix[1][2] 0.006368 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012735 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005825 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ANP A 1 401 364 ANP ANP . D 3 AH0 A 1 402 365 AH0 AH0 . E 4 GOL A 1 403 366 GOL GOL . F 5 TLA A 1 404 367 TLA TLA . G 2 ANP B 1 401 364 ANP ANP . H 3 AH0 B 1 402 365 AH0 AH0 . I 4 GOL B 1 403 366 GOL GOL . J 5 TLA B 1 404 367 TLA TLA . K 6 HOH A 1 501 261 HOH HOH . K 6 HOH A 2 502 42 HOH HOH . K 6 HOH A 3 503 136 HOH HOH . K 6 HOH A 4 504 205 HOH HOH . K 6 HOH A 5 505 231 HOH HOH . K 6 HOH A 6 506 220 HOH HOH . K 6 HOH A 7 507 225 HOH HOH . K 6 HOH A 8 508 228 HOH HOH . K 6 HOH A 9 509 55 HOH HOH . K 6 HOH A 10 510 250 HOH HOH . K 6 HOH A 11 511 180 HOH HOH . K 6 HOH A 12 512 89 HOH HOH . K 6 HOH A 13 513 190 HOH HOH . K 6 HOH A 14 514 154 HOH HOH . K 6 HOH A 15 515 80 HOH HOH . K 6 HOH A 16 516 211 HOH HOH . K 6 HOH A 17 517 75 HOH HOH . K 6 HOH A 18 518 10 HOH HOH . K 6 HOH A 19 519 44 HOH HOH . K 6 HOH A 20 520 258 HOH HOH . K 6 HOH A 21 521 183 HOH HOH . K 6 HOH A 22 522 153 HOH HOH . K 6 HOH A 23 523 79 HOH HOH . K 6 HOH A 24 524 2 HOH HOH . K 6 HOH A 25 525 170 HOH HOH . K 6 HOH A 26 526 234 HOH HOH . K 6 HOH A 27 527 137 HOH HOH . K 6 HOH A 28 528 9 HOH HOH . K 6 HOH A 29 529 107 HOH HOH . K 6 HOH A 30 530 47 HOH HOH . K 6 HOH A 31 531 226 HOH HOH . K 6 HOH A 32 532 6 HOH HOH . K 6 HOH A 33 533 254 HOH HOH . K 6 HOH A 34 534 15 HOH HOH . K 6 HOH A 35 535 148 HOH HOH . K 6 HOH A 36 536 206 HOH HOH . K 6 HOH A 37 537 108 HOH HOH . K 6 HOH A 38 538 149 HOH HOH . K 6 HOH A 39 539 52 HOH HOH . K 6 HOH A 40 540 76 HOH HOH . K 6 HOH A 41 541 32 HOH HOH . K 6 HOH A 42 542 49 HOH HOH . K 6 HOH A 43 543 243 HOH HOH . K 6 HOH A 44 544 191 HOH HOH . K 6 HOH A 45 545 36 HOH HOH . K 6 HOH A 46 546 119 HOH HOH . K 6 HOH A 47 547 104 HOH HOH . K 6 HOH A 48 548 16 HOH HOH . K 6 HOH A 49 549 193 HOH HOH . K 6 HOH A 50 550 84 HOH HOH . K 6 HOH A 51 551 142 HOH HOH . K 6 HOH A 52 552 46 HOH HOH . K 6 HOH A 53 553 217 HOH HOH . K 6 HOH A 54 554 203 HOH HOH . K 6 HOH A 55 555 145 HOH HOH . K 6 HOH A 56 556 182 HOH HOH . K 6 HOH A 57 557 23 HOH HOH . K 6 HOH A 58 558 121 HOH HOH . K 6 HOH A 59 559 135 HOH HOH . K 6 HOH A 60 560 67 HOH HOH . K 6 HOH A 61 561 157 HOH HOH . K 6 HOH A 62 562 238 HOH HOH . K 6 HOH A 63 563 215 HOH HOH . K 6 HOH A 64 564 111 HOH HOH . K 6 HOH A 65 565 172 HOH HOH . K 6 HOH A 66 566 198 HOH HOH . K 6 HOH A 67 567 212 HOH HOH . K 6 HOH A 68 568 240 HOH HOH . K 6 HOH A 69 569 173 HOH HOH . K 6 HOH A 70 570 134 HOH HOH . K 6 HOH A 71 571 28 HOH HOH . K 6 HOH A 72 572 131 HOH HOH . K 6 HOH A 73 573 96 HOH HOH . K 6 HOH A 74 574 216 HOH HOH . K 6 HOH A 75 575 24 HOH HOH . K 6 HOH A 76 576 68 HOH HOH . K 6 HOH A 77 577 5 HOH HOH . K 6 HOH A 78 578 222 HOH HOH . K 6 HOH A 79 579 177 HOH HOH . K 6 HOH A 80 580 200 HOH HOH . K 6 HOH A 81 581 21 HOH HOH . K 6 HOH A 82 582 105 HOH HOH . K 6 HOH A 83 583 144 HOH HOH . K 6 HOH A 84 584 169 HOH HOH . K 6 HOH A 85 585 152 HOH HOH . K 6 HOH A 86 586 255 HOH HOH . K 6 HOH A 87 587 256 HOH HOH . K 6 HOH A 88 588 64 HOH HOH . K 6 HOH A 89 589 156 HOH HOH . K 6 HOH A 90 590 147 HOH HOH . K 6 HOH A 91 591 45 HOH HOH . K 6 HOH A 92 592 19 HOH HOH . K 6 HOH A 93 593 87 HOH HOH . K 6 HOH A 94 594 118 HOH HOH . K 6 HOH A 95 595 130 HOH HOH . K 6 HOH A 96 596 61 HOH HOH . K 6 HOH A 97 597 163 HOH HOH . K 6 HOH A 98 598 151 HOH HOH . K 6 HOH A 99 599 174 HOH HOH . K 6 HOH A 100 600 196 HOH HOH . K 6 HOH A 101 601 100 HOH HOH . K 6 HOH A 102 602 82 HOH HOH . K 6 HOH A 103 603 48 HOH HOH . K 6 HOH A 104 604 249 HOH HOH . K 6 HOH A 105 605 51 HOH HOH . K 6 HOH A 106 606 8 HOH HOH . K 6 HOH A 107 607 17 HOH HOH . K 6 HOH A 108 608 202 HOH HOH . K 6 HOH A 109 609 257 HOH HOH . K 6 HOH A 110 610 218 HOH HOH . K 6 HOH A 111 611 208 HOH HOH . K 6 HOH A 112 612 244 HOH HOH . K 6 HOH A 113 613 69 HOH HOH . K 6 HOH A 114 614 95 HOH HOH . K 6 HOH A 115 615 40 HOH HOH . K 6 HOH A 116 616 165 HOH HOH . K 6 HOH A 117 617 41 HOH HOH . K 6 HOH A 118 618 245 HOH HOH . K 6 HOH A 119 619 247 HOH HOH . K 6 HOH A 120 620 109 HOH HOH . K 6 HOH A 121 621 230 HOH HOH . K 6 HOH A 122 622 252 HOH HOH . K 6 HOH A 123 623 34 HOH HOH . K 6 HOH A 124 624 35 HOH HOH . K 6 HOH A 125 625 236 HOH HOH . K 6 HOH A 126 626 184 HOH HOH . K 6 HOH A 127 627 235 HOH HOH . K 6 HOH A 128 628 199 HOH HOH . K 6 HOH A 129 629 37 HOH HOH . K 6 HOH A 130 630 179 HOH HOH . K 6 HOH A 131 631 197 HOH HOH . L 6 HOH B 1 501 232 HOH HOH . L 6 HOH B 2 502 221 HOH HOH . L 6 HOH B 3 503 38 HOH HOH . L 6 HOH B 4 504 70 HOH HOH . L 6 HOH B 5 505 30 HOH HOH . L 6 HOH B 6 506 122 HOH HOH . L 6 HOH B 7 507 224 HOH HOH . L 6 HOH B 8 508 260 HOH HOH . L 6 HOH B 9 509 239 HOH HOH . L 6 HOH B 10 510 175 HOH HOH . L 6 HOH B 11 511 253 HOH HOH . L 6 HOH B 12 512 160 HOH HOH . L 6 HOH B 13 513 7 HOH HOH . L 6 HOH B 14 514 62 HOH HOH . L 6 HOH B 15 515 259 HOH HOH . L 6 HOH B 16 516 178 HOH HOH . L 6 HOH B 17 517 128 HOH HOH . L 6 HOH B 18 518 242 HOH HOH . L 6 HOH B 19 519 53 HOH HOH . L 6 HOH B 20 520 251 HOH HOH . L 6 HOH B 21 521 20 HOH HOH . L 6 HOH B 22 522 194 HOH HOH . L 6 HOH B 23 523 50 HOH HOH . L 6 HOH B 24 524 74 HOH HOH . L 6 HOH B 25 525 113 HOH HOH . L 6 HOH B 26 526 139 HOH HOH . L 6 HOH B 27 527 166 HOH HOH . L 6 HOH B 28 528 58 HOH HOH . L 6 HOH B 29 529 188 HOH HOH . L 6 HOH B 30 530 66 HOH HOH . L 6 HOH B 31 531 133 HOH HOH . L 6 HOH B 32 532 201 HOH HOH . L 6 HOH B 33 533 132 HOH HOH . L 6 HOH B 34 534 110 HOH HOH . L 6 HOH B 35 535 213 HOH HOH . L 6 HOH B 36 536 31 HOH HOH . L 6 HOH B 37 537 106 HOH HOH . L 6 HOH B 38 538 4 HOH HOH . L 6 HOH B 39 539 204 HOH HOH . L 6 HOH B 40 540 167 HOH HOH . L 6 HOH B 41 541 1 HOH HOH . L 6 HOH B 42 542 143 HOH HOH . L 6 HOH B 43 543 78 HOH HOH . L 6 HOH B 44 544 54 HOH HOH . L 6 HOH B 45 545 123 HOH HOH . L 6 HOH B 46 546 233 HOH HOH . L 6 HOH B 47 547 73 HOH HOH . L 6 HOH B 48 548 12 HOH HOH . L 6 HOH B 49 549 140 HOH HOH . L 6 HOH B 50 550 63 HOH HOH . L 6 HOH B 51 551 11 HOH HOH . L 6 HOH B 52 552 27 HOH HOH . L 6 HOH B 53 553 187 HOH HOH . L 6 HOH B 54 554 22 HOH HOH . L 6 HOH B 55 555 14 HOH HOH . L 6 HOH B 56 556 114 HOH HOH . L 6 HOH B 57 557 112 HOH HOH . L 6 HOH B 58 558 98 HOH HOH . L 6 HOH B 59 559 241 HOH HOH . L 6 HOH B 60 560 102 HOH HOH . L 6 HOH B 61 561 29 HOH HOH . L 6 HOH B 62 562 101 HOH HOH . L 6 HOH B 63 563 13 HOH HOH . L 6 HOH B 64 564 164 HOH HOH . L 6 HOH B 65 565 186 HOH HOH . L 6 HOH B 66 566 43 HOH HOH . L 6 HOH B 67 567 116 HOH HOH . L 6 HOH B 68 568 91 HOH HOH . L 6 HOH B 69 569 138 HOH HOH . L 6 HOH B 70 570 93 HOH HOH . L 6 HOH B 71 571 150 HOH HOH . L 6 HOH B 72 572 57 HOH HOH . L 6 HOH B 73 573 209 HOH HOH . L 6 HOH B 74 574 117 HOH HOH . L 6 HOH B 75 575 90 HOH HOH . L 6 HOH B 76 576 25 HOH HOH . L 6 HOH B 77 577 159 HOH HOH . L 6 HOH B 78 578 115 HOH HOH . L 6 HOH B 79 579 72 HOH HOH . L 6 HOH B 80 580 71 HOH HOH . L 6 HOH B 81 581 214 HOH HOH . L 6 HOH B 82 582 77 HOH HOH . L 6 HOH B 83 583 141 HOH HOH . L 6 HOH B 84 584 125 HOH HOH . L 6 HOH B 85 585 3 HOH HOH . L 6 HOH B 86 586 59 HOH HOH . L 6 HOH B 87 587 223 HOH HOH . L 6 HOH B 88 588 227 HOH HOH . L 6 HOH B 89 589 171 HOH HOH . L 6 HOH B 90 590 207 HOH HOH . L 6 HOH B 91 591 65 HOH HOH . L 6 HOH B 92 592 155 HOH HOH . L 6 HOH B 93 593 99 HOH HOH . L 6 HOH B 94 594 26 HOH HOH . L 6 HOH B 95 595 162 HOH HOH . L 6 HOH B 96 596 60 HOH HOH . L 6 HOH B 97 597 127 HOH HOH . L 6 HOH B 98 598 158 HOH HOH . L 6 HOH B 99 599 126 HOH HOH . L 6 HOH B 100 600 81 HOH HOH . L 6 HOH B 101 601 120 HOH HOH . L 6 HOH B 102 602 124 HOH HOH . L 6 HOH B 103 603 18 HOH HOH . L 6 HOH B 104 604 85 HOH HOH . L 6 HOH B 105 605 56 HOH HOH . L 6 HOH B 106 606 229 HOH HOH . L 6 HOH B 107 607 219 HOH HOH . L 6 HOH B 108 608 189 HOH HOH . L 6 HOH B 109 609 185 HOH HOH . L 6 HOH B 110 610 94 HOH HOH . L 6 HOH B 111 611 168 HOH HOH . L 6 HOH B 112 612 92 HOH HOH . L 6 HOH B 113 613 210 HOH HOH . L 6 HOH B 114 614 39 HOH HOH . L 6 HOH B 115 615 237 HOH HOH . L 6 HOH B 116 616 195 HOH HOH . L 6 HOH B 117 617 129 HOH HOH . L 6 HOH B 118 618 103 HOH HOH . L 6 HOH B 119 619 88 HOH HOH . L 6 HOH B 120 620 97 HOH HOH . L 6 HOH B 121 621 192 HOH HOH . L 6 HOH B 122 622 33 HOH HOH . L 6 HOH B 123 623 176 HOH HOH . L 6 HOH B 124 624 181 HOH HOH . L 6 HOH B 125 625 83 HOH HOH . L 6 HOH B 126 626 86 HOH HOH . L 6 HOH B 127 627 146 HOH HOH . L 6 HOH B 128 628 161 HOH HOH . L 6 HOH B 129 629 248 HOH HOH . L 6 HOH B 130 630 246 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 AH0 . . . H 3 28.688 7.94 36.622 1 20.05 0 C1 AH0 402 B 1 HETATM 2 C C2 AH0 . . . H 3 28.767 6.793 35.609 1 20.75 0 C2 AH0 402 B 1 HETATM 3 N N2 AH0 . . . H 3 27.52 6.597 34.948 1 20 0 N2 AH0 402 B 1 HETATM 4 C C7 AH0 . . . H 3 27.431 6.871 33.561 1 20.35 0 C7 AH0 402 B 1 HETATM 5 O O7 AH0 . . . H 3 28.417 7.291 32.905 1 19.38 0 O7 AH0 402 B 1 HETATM 6 C C8 AH0 . . . H 3 26.059 6.624 32.893 1 20.12 0 C8 AH0 402 B 1 HETATM 7 C C3 AH0 . . . H 3 29.125 5.476 36.298 1 20.44 0 C3 AH0 402 B 1 HETATM 8 O O3 AH0 . . . H 3 30.578 5.384 36.255 1 22.16 0 O3 AH0 402 B 1 HETATM 9 C C4 AH0 . . . H 3 28.703 5.377 37.78 1 20.94 0 C4 AH0 402 B 1 HETATM 10 O O4 AH0 . . . H 3 27.431 4.735 37.874 1 22.26 0 O4 AH0 402 B 1 HETATM 11 C C5 AH0 . . . H 3 28.618 6.73 38.475 1 20.76 0 C5 AH0 402 B 1 HETATM 12 O O5 AH0 . . . H 3 27.801 7.601 37.68 1 20.72 0 O5 AH0 402 B 1 HETATM 13 C C6 AH0 . . . H 3 29.907 7.465 38.491 1 20.11 0 C6 AH0 402 B 1 HETATM 14 O O6 AH0 . . . H 3 29.958 8.164 37.236 1 21.66 0 O6 AH0 402 B 1 HETATM 15 C CA AH0 . . . H 3 31.364 4.362 36.875 1 23.45 0 CA AH0 402 B 1 HETATM 16 C CB AH0 . . . H 3 32.715 4.291 36.126 1 24 0 CB AH0 402 B 1 HETATM 17 C C AH0 . . . H 3 30.686 3.01 36.805 1 23.88 0 C AH0 402 B 1 HETATM 18 O O AH0 . . . H 3 29.936 2.699 35.882 1 21.98 0 O AH0 402 B 1 HETATM 19 O OXT AH0 . . . H 3 30.943 2.182 37.779 1 25.42 0 OXT AH0 402 B 1 # _model_server_stats.io_time_ms 22 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 19 #