data_8CPB
#
_model_server_result.job_id            7FaxDN_9XAfwYBVs2mVuZA 
_model_server_result.datetime_utc      '2024-11-29 05:46:10' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cpb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":403}' 
#
_entry.id    8CPB 
#
_exptl.entry_id    8CPB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8CPB 
_cell.length_a            90.67 
_cell.length_b            90.67 
_cell.length_c            171.686 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CPB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        173 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 63' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 I N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 216 n n 
C1 C2 GOL sing 217 n n 
C1 H11 GOL sing 218 n n 
C1 H12 GOL sing 219 n n 
O1 HO1 GOL sing 220 n n 
C2 O2 GOL sing 221 n n 
C2 C3 GOL sing 222 n n 
C2 H2 GOL sing 223 n n 
O2 HO2 GOL sing 224 n n 
C3 O3 GOL sing 225 n n 
C3 H31 GOL sing 226 n n 
C3 H32 GOL sing 227 n n 
O3 HO3 GOL sing 228 n n 
#
_atom_sites.entry_id                     8CPB 
_atom_sites.fract_transf_matrix[1][1]    0.011029 
_atom_sites.fract_transf_matrix[1][2]    0.006368 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012735 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005825 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ANP A 1 401 364 ANP ANP . 
D 3 AH0 A 1 402 365 AH0 AH0 . 
E 4 GOL A 1 403 366 GOL GOL . 
F 5 TLA A 1 404 367 TLA TLA . 
G 2 ANP B 1 401 364 ANP ANP . 
H 3 AH0 B 1 402 365 AH0 AH0 . 
I 4 GOL B 1 403 366 GOL GOL . 
J 5 TLA B 1 404 367 TLA TLA . 
K 6 HOH A 1 501 261 HOH HOH . 
K 6 HOH A 2 502 42 HOH HOH . 
K 6 HOH A 3 503 136 HOH HOH . 
K 6 HOH A 4 504 205 HOH HOH . 
K 6 HOH A 5 505 231 HOH HOH . 
K 6 HOH A 6 506 220 HOH HOH . 
K 6 HOH A 7 507 225 HOH HOH . 
K 6 HOH A 8 508 228 HOH HOH . 
K 6 HOH A 9 509 55 HOH HOH . 
K 6 HOH A 10 510 250 HOH HOH . 
K 6 HOH A 11 511 180 HOH HOH . 
K 6 HOH A 12 512 89 HOH HOH . 
K 6 HOH A 13 513 190 HOH HOH . 
K 6 HOH A 14 514 154 HOH HOH . 
K 6 HOH A 15 515 80 HOH HOH . 
K 6 HOH A 16 516 211 HOH HOH . 
K 6 HOH A 17 517 75 HOH HOH . 
K 6 HOH A 18 518 10 HOH HOH . 
K 6 HOH A 19 519 44 HOH HOH . 
K 6 HOH A 20 520 258 HOH HOH . 
K 6 HOH A 21 521 183 HOH HOH . 
K 6 HOH A 22 522 153 HOH HOH . 
K 6 HOH A 23 523 79 HOH HOH . 
K 6 HOH A 24 524 2 HOH HOH . 
K 6 HOH A 25 525 170 HOH HOH . 
K 6 HOH A 26 526 234 HOH HOH . 
K 6 HOH A 27 527 137 HOH HOH . 
K 6 HOH A 28 528 9 HOH HOH . 
K 6 HOH A 29 529 107 HOH HOH . 
K 6 HOH A 30 530 47 HOH HOH . 
K 6 HOH A 31 531 226 HOH HOH . 
K 6 HOH A 32 532 6 HOH HOH . 
K 6 HOH A 33 533 254 HOH HOH . 
K 6 HOH A 34 534 15 HOH HOH . 
K 6 HOH A 35 535 148 HOH HOH . 
K 6 HOH A 36 536 206 HOH HOH . 
K 6 HOH A 37 537 108 HOH HOH . 
K 6 HOH A 38 538 149 HOH HOH . 
K 6 HOH A 39 539 52 HOH HOH . 
K 6 HOH A 40 540 76 HOH HOH . 
K 6 HOH A 41 541 32 HOH HOH . 
K 6 HOH A 42 542 49 HOH HOH . 
K 6 HOH A 43 543 243 HOH HOH . 
K 6 HOH A 44 544 191 HOH HOH . 
K 6 HOH A 45 545 36 HOH HOH . 
K 6 HOH A 46 546 119 HOH HOH . 
K 6 HOH A 47 547 104 HOH HOH . 
K 6 HOH A 48 548 16 HOH HOH . 
K 6 HOH A 49 549 193 HOH HOH . 
K 6 HOH A 50 550 84 HOH HOH . 
K 6 HOH A 51 551 142 HOH HOH . 
K 6 HOH A 52 552 46 HOH HOH . 
K 6 HOH A 53 553 217 HOH HOH . 
K 6 HOH A 54 554 203 HOH HOH . 
K 6 HOH A 55 555 145 HOH HOH . 
K 6 HOH A 56 556 182 HOH HOH . 
K 6 HOH A 57 557 23 HOH HOH . 
K 6 HOH A 58 558 121 HOH HOH . 
K 6 HOH A 59 559 135 HOH HOH . 
K 6 HOH A 60 560 67 HOH HOH . 
K 6 HOH A 61 561 157 HOH HOH . 
K 6 HOH A 62 562 238 HOH HOH . 
K 6 HOH A 63 563 215 HOH HOH . 
K 6 HOH A 64 564 111 HOH HOH . 
K 6 HOH A 65 565 172 HOH HOH . 
K 6 HOH A 66 566 198 HOH HOH . 
K 6 HOH A 67 567 212 HOH HOH . 
K 6 HOH A 68 568 240 HOH HOH . 
K 6 HOH A 69 569 173 HOH HOH . 
K 6 HOH A 70 570 134 HOH HOH . 
K 6 HOH A 71 571 28 HOH HOH . 
K 6 HOH A 72 572 131 HOH HOH . 
K 6 HOH A 73 573 96 HOH HOH . 
K 6 HOH A 74 574 216 HOH HOH . 
K 6 HOH A 75 575 24 HOH HOH . 
K 6 HOH A 76 576 68 HOH HOH . 
K 6 HOH A 77 577 5 HOH HOH . 
K 6 HOH A 78 578 222 HOH HOH . 
K 6 HOH A 79 579 177 HOH HOH . 
K 6 HOH A 80 580 200 HOH HOH . 
K 6 HOH A 81 581 21 HOH HOH . 
K 6 HOH A 82 582 105 HOH HOH . 
K 6 HOH A 83 583 144 HOH HOH . 
K 6 HOH A 84 584 169 HOH HOH . 
K 6 HOH A 85 585 152 HOH HOH . 
K 6 HOH A 86 586 255 HOH HOH . 
K 6 HOH A 87 587 256 HOH HOH . 
K 6 HOH A 88 588 64 HOH HOH . 
K 6 HOH A 89 589 156 HOH HOH . 
K 6 HOH A 90 590 147 HOH HOH . 
K 6 HOH A 91 591 45 HOH HOH . 
K 6 HOH A 92 592 19 HOH HOH . 
K 6 HOH A 93 593 87 HOH HOH . 
K 6 HOH A 94 594 118 HOH HOH . 
K 6 HOH A 95 595 130 HOH HOH . 
K 6 HOH A 96 596 61 HOH HOH . 
K 6 HOH A 97 597 163 HOH HOH . 
K 6 HOH A 98 598 151 HOH HOH . 
K 6 HOH A 99 599 174 HOH HOH . 
K 6 HOH A 100 600 196 HOH HOH . 
K 6 HOH A 101 601 100 HOH HOH . 
K 6 HOH A 102 602 82 HOH HOH . 
K 6 HOH A 103 603 48 HOH HOH . 
K 6 HOH A 104 604 249 HOH HOH . 
K 6 HOH A 105 605 51 HOH HOH . 
K 6 HOH A 106 606 8 HOH HOH . 
K 6 HOH A 107 607 17 HOH HOH . 
K 6 HOH A 108 608 202 HOH HOH . 
K 6 HOH A 109 609 257 HOH HOH . 
K 6 HOH A 110 610 218 HOH HOH . 
K 6 HOH A 111 611 208 HOH HOH . 
K 6 HOH A 112 612 244 HOH HOH . 
K 6 HOH A 113 613 69 HOH HOH . 
K 6 HOH A 114 614 95 HOH HOH . 
K 6 HOH A 115 615 40 HOH HOH . 
K 6 HOH A 116 616 165 HOH HOH . 
K 6 HOH A 117 617 41 HOH HOH . 
K 6 HOH A 118 618 245 HOH HOH . 
K 6 HOH A 119 619 247 HOH HOH . 
K 6 HOH A 120 620 109 HOH HOH . 
K 6 HOH A 121 621 230 HOH HOH . 
K 6 HOH A 122 622 252 HOH HOH . 
K 6 HOH A 123 623 34 HOH HOH . 
K 6 HOH A 124 624 35 HOH HOH . 
K 6 HOH A 125 625 236 HOH HOH . 
K 6 HOH A 126 626 184 HOH HOH . 
K 6 HOH A 127 627 235 HOH HOH . 
K 6 HOH A 128 628 199 HOH HOH . 
K 6 HOH A 129 629 37 HOH HOH . 
K 6 HOH A 130 630 179 HOH HOH . 
K 6 HOH A 131 631 197 HOH HOH . 
L 6 HOH B 1 501 232 HOH HOH . 
L 6 HOH B 2 502 221 HOH HOH . 
L 6 HOH B 3 503 38 HOH HOH . 
L 6 HOH B 4 504 70 HOH HOH . 
L 6 HOH B 5 505 30 HOH HOH . 
L 6 HOH B 6 506 122 HOH HOH . 
L 6 HOH B 7 507 224 HOH HOH . 
L 6 HOH B 8 508 260 HOH HOH . 
L 6 HOH B 9 509 239 HOH HOH . 
L 6 HOH B 10 510 175 HOH HOH . 
L 6 HOH B 11 511 253 HOH HOH . 
L 6 HOH B 12 512 160 HOH HOH . 
L 6 HOH B 13 513 7 HOH HOH . 
L 6 HOH B 14 514 62 HOH HOH . 
L 6 HOH B 15 515 259 HOH HOH . 
L 6 HOH B 16 516 178 HOH HOH . 
L 6 HOH B 17 517 128 HOH HOH . 
L 6 HOH B 18 518 242 HOH HOH . 
L 6 HOH B 19 519 53 HOH HOH . 
L 6 HOH B 20 520 251 HOH HOH . 
L 6 HOH B 21 521 20 HOH HOH . 
L 6 HOH B 22 522 194 HOH HOH . 
L 6 HOH B 23 523 50 HOH HOH . 
L 6 HOH B 24 524 74 HOH HOH . 
L 6 HOH B 25 525 113 HOH HOH . 
L 6 HOH B 26 526 139 HOH HOH . 
L 6 HOH B 27 527 166 HOH HOH . 
L 6 HOH B 28 528 58 HOH HOH . 
L 6 HOH B 29 529 188 HOH HOH . 
L 6 HOH B 30 530 66 HOH HOH . 
L 6 HOH B 31 531 133 HOH HOH . 
L 6 HOH B 32 532 201 HOH HOH . 
L 6 HOH B 33 533 132 HOH HOH . 
L 6 HOH B 34 534 110 HOH HOH . 
L 6 HOH B 35 535 213 HOH HOH . 
L 6 HOH B 36 536 31 HOH HOH . 
L 6 HOH B 37 537 106 HOH HOH . 
L 6 HOH B 38 538 4 HOH HOH . 
L 6 HOH B 39 539 204 HOH HOH . 
L 6 HOH B 40 540 167 HOH HOH . 
L 6 HOH B 41 541 1 HOH HOH . 
L 6 HOH B 42 542 143 HOH HOH . 
L 6 HOH B 43 543 78 HOH HOH . 
L 6 HOH B 44 544 54 HOH HOH . 
L 6 HOH B 45 545 123 HOH HOH . 
L 6 HOH B 46 546 233 HOH HOH . 
L 6 HOH B 47 547 73 HOH HOH . 
L 6 HOH B 48 548 12 HOH HOH . 
L 6 HOH B 49 549 140 HOH HOH . 
L 6 HOH B 50 550 63 HOH HOH . 
L 6 HOH B 51 551 11 HOH HOH . 
L 6 HOH B 52 552 27 HOH HOH . 
L 6 HOH B 53 553 187 HOH HOH . 
L 6 HOH B 54 554 22 HOH HOH . 
L 6 HOH B 55 555 14 HOH HOH . 
L 6 HOH B 56 556 114 HOH HOH . 
L 6 HOH B 57 557 112 HOH HOH . 
L 6 HOH B 58 558 98 HOH HOH . 
L 6 HOH B 59 559 241 HOH HOH . 
L 6 HOH B 60 560 102 HOH HOH . 
L 6 HOH B 61 561 29 HOH HOH . 
L 6 HOH B 62 562 101 HOH HOH . 
L 6 HOH B 63 563 13 HOH HOH . 
L 6 HOH B 64 564 164 HOH HOH . 
L 6 HOH B 65 565 186 HOH HOH . 
L 6 HOH B 66 566 43 HOH HOH . 
L 6 HOH B 67 567 116 HOH HOH . 
L 6 HOH B 68 568 91 HOH HOH . 
L 6 HOH B 69 569 138 HOH HOH . 
L 6 HOH B 70 570 93 HOH HOH . 
L 6 HOH B 71 571 150 HOH HOH . 
L 6 HOH B 72 572 57 HOH HOH . 
L 6 HOH B 73 573 209 HOH HOH . 
L 6 HOH B 74 574 117 HOH HOH . 
L 6 HOH B 75 575 90 HOH HOH . 
L 6 HOH B 76 576 25 HOH HOH . 
L 6 HOH B 77 577 159 HOH HOH . 
L 6 HOH B 78 578 115 HOH HOH . 
L 6 HOH B 79 579 72 HOH HOH . 
L 6 HOH B 80 580 71 HOH HOH . 
L 6 HOH B 81 581 214 HOH HOH . 
L 6 HOH B 82 582 77 HOH HOH . 
L 6 HOH B 83 583 141 HOH HOH . 
L 6 HOH B 84 584 125 HOH HOH . 
L 6 HOH B 85 585 3 HOH HOH . 
L 6 HOH B 86 586 59 HOH HOH . 
L 6 HOH B 87 587 223 HOH HOH . 
L 6 HOH B 88 588 227 HOH HOH . 
L 6 HOH B 89 589 171 HOH HOH . 
L 6 HOH B 90 590 207 HOH HOH . 
L 6 HOH B 91 591 65 HOH HOH . 
L 6 HOH B 92 592 155 HOH HOH . 
L 6 HOH B 93 593 99 HOH HOH . 
L 6 HOH B 94 594 26 HOH HOH . 
L 6 HOH B 95 595 162 HOH HOH . 
L 6 HOH B 96 596 60 HOH HOH . 
L 6 HOH B 97 597 127 HOH HOH . 
L 6 HOH B 98 598 158 HOH HOH . 
L 6 HOH B 99 599 126 HOH HOH . 
L 6 HOH B 100 600 81 HOH HOH . 
L 6 HOH B 101 601 120 HOH HOH . 
L 6 HOH B 102 602 124 HOH HOH . 
L 6 HOH B 103 603 18 HOH HOH . 
L 6 HOH B 104 604 85 HOH HOH . 
L 6 HOH B 105 605 56 HOH HOH . 
L 6 HOH B 106 606 229 HOH HOH . 
L 6 HOH B 107 607 219 HOH HOH . 
L 6 HOH B 108 608 189 HOH HOH . 
L 6 HOH B 109 609 185 HOH HOH . 
L 6 HOH B 110 610 94 HOH HOH . 
L 6 HOH B 111 611 168 HOH HOH . 
L 6 HOH B 112 612 92 HOH HOH . 
L 6 HOH B 113 613 210 HOH HOH . 
L 6 HOH B 114 614 39 HOH HOH . 
L 6 HOH B 115 615 237 HOH HOH . 
L 6 HOH B 116 616 195 HOH HOH . 
L 6 HOH B 117 617 129 HOH HOH . 
L 6 HOH B 118 618 103 HOH HOH . 
L 6 HOH B 119 619 88 HOH HOH . 
L 6 HOH B 120 620 97 HOH HOH . 
L 6 HOH B 121 621 192 HOH HOH . 
L 6 HOH B 122 622 33 HOH HOH . 
L 6 HOH B 123 623 176 HOH HOH . 
L 6 HOH B 124 624 181 HOH HOH . 
L 6 HOH B 125 625 83 HOH HOH . 
L 6 HOH B 126 626 86 HOH HOH . 
L 6 HOH B 127 627 146 HOH HOH . 
L 6 HOH B 128 628 161 HOH HOH . 
L 6 HOH B 129 629 248 HOH HOH . 
L 6 HOH B 130 630 246 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . E 4 8.14 12.93 3.646 1 43.67 0 C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . E 4 8.45 13.026 5.031 1 42.52 0 O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . E 4 7.992 11.491 3.204 1 45.15 0 C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . E 4 6.69 11.013 3.538 1 47.04 0 O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . E 4 8.247 11.295 1.725 1 45.9 0 C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . E 4 9.594 10.901 1.477 1 44.6 0 O3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           6 
#