data_8CQ8
#
_model_server_result.job_id            OEAvBj1roTyuLqZ-QLCwyA 
_model_server_result.datetime_utc      '2024-12-03 17:30:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cq8 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    8CQ8 
#
_exptl.entry_id    8CQ8 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              308.335 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'methyl 4-[2,6-bis(azanyl)-5-(2-cyclopropylethynyl)pyrimidin-4-yl]benzoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8CQ8 
_cell.length_a            60.9 
_cell.length_b            71.453 
_cell.length_c            72.26 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CQ8 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 40 A HIS 38 1_555 F CO CO . A CO 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc2 F CO CO . A CO 304 1_555 P O HOH . A HOH 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? 
metalc ? metalc3 F CO CO . A CO 304 1_555 P O HOH . A HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc4 F CO CO . A CO 304 1_555 B NE2 HIS 159 B HIS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.158 ? 
metalc ? metalc5 F CO CO . A CO 304 1_555 Q O HOH . B HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.848 ? 
metalc ? metalc6 F CO CO . A CO 304 1_555 Q O HOH . B HOH 452 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc7 B NE2 HIS 40 B HIS 38 1_555 M CO CO . B CO 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc8 M CO CO . B CO 305 1_555 Q O HOH . B HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.776 ? 
metalc ? metalc9 M CO CO . B CO 305 1_555 Q O HOH . B HOH 436 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
metalc ? metalc10 M CO CO . B CO 305 1_555 Q O HOH . B HOH 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
#
_chem_comp.formula           'C17 H16 N4 O2' 
_chem_comp.formula_weight    308.335 
_chem_comp.id                VFF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'methyl 4-[2,6-bis(azanyl)-5-(2-cyclopropylethynyl)pyrimidin-4-yl]benzoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N05 C04 VFF sing 487 n n 
C04 N03 VFF doub 488 n y 
C04 C06 VFF sing 489 n y 
N03 C02 VFF sing 490 n y 
C11 C09 VFF sing 491 n n 
C11 C10 VFF sing 492 n n 
C08 C07 VFF trip 493 n n 
C08 C09 VFF sing 494 n n 
C07 C06 VFF sing 495 n n 
C09 C10 VFF sing 496 n n 
C06 C12 VFF doub 497 n y 
C02 N01 VFF sing 498 n n 
C02 N23 VFF doub 499 n y 
C12 N23 VFF sing 500 n y 
C12 C13 VFF sing 501 n n 
C13 C14 VFF doub 502 n y 
C13 C22 VFF sing 503 n y 
C14 C15 VFF sing 504 n y 
C22 C21 VFF doub 505 n y 
C15 C16 VFF doub 506 n y 
C21 C16 VFF sing 507 n y 
C16 C17 VFF sing 508 n n 
C17 O20 VFF doub 509 n n 
C17 O18 VFF sing 510 n n 
O18 C19 VFF sing 511 n n 
C10 H1 VFF sing 512 n n 
C10 H2 VFF sing 513 n n 
C15 H3 VFF sing 514 n n 
C21 H4 VFF sing 515 n n 
C22 H5 VFF sing 516 n n 
C09 H6 VFF sing 517 n n 
C11 H7 VFF sing 518 n n 
C11 H8 VFF sing 519 n n 
C14 H9 VFF sing 520 n n 
C19 H10 VFF sing 521 n n 
C19 H11 VFF sing 522 n n 
C19 H12 VFF sing 523 n n 
N01 H13 VFF sing 524 n n 
N01 H14 VFF sing 525 n n 
N05 H15 VFF sing 526 n n 
N05 H16 VFF sing 527 n n 
#
_atom_sites.entry_id                     8CQ8 
_atom_sites.fract_transf_matrix[1][1]    0.01642 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013995 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013839 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 VFF A 1 301 301 VFF LIG . 
D 3 MES A 1 302 401 MES MES . 
E 4 NDP A 1 303 201 NDP NDP . 
F 5 CO A 1 304 1 CO CO . 
G 6 SO4 A 1 305 2 SO4 SO4 . 
H 6 SO4 A 1 306 4 SO4 SO4 . 
I 2 VFF B 1 301 301 VFF LIG . 
J 3 MES B 1 302 401 MES MES . 
K 3 MES B 1 303 501 MES MES . 
L 4 NDP B 1 304 201 NDP NDP . 
M 5 CO B 1 305 2 CO CO . 
N 6 SO4 B 1 306 1 SO4 SO4 . 
O 6 SO4 B 1 307 3 SO4 SO4 . 
P 7 HOH A 1 401 45 HOH HOH . 
P 7 HOH A 2 402 121 HOH HOH . 
P 7 HOH A 3 403 55 HOH HOH . 
P 7 HOH A 4 404 123 HOH HOH . 
P 7 HOH A 5 405 49 HOH HOH . 
P 7 HOH A 6 406 36 HOH HOH . 
P 7 HOH A 7 407 99 HOH HOH . 
P 7 HOH A 8 408 61 HOH HOH . 
P 7 HOH A 9 409 78 HOH HOH . 
P 7 HOH A 10 410 4 HOH HOH . 
P 7 HOH A 11 411 82 HOH HOH . 
P 7 HOH A 12 412 56 HOH HOH . 
P 7 HOH A 13 413 72 HOH HOH . 
P 7 HOH A 14 414 6 HOH HOH . 
P 7 HOH A 15 415 92 HOH HOH . 
P 7 HOH A 16 416 94 HOH HOH . 
P 7 HOH A 17 417 27 HOH HOH . 
P 7 HOH A 18 418 30 HOH HOH . 
P 7 HOH A 19 419 119 HOH HOH . 
P 7 HOH A 20 420 57 HOH HOH . 
P 7 HOH A 21 421 65 HOH HOH . 
P 7 HOH A 22 422 25 HOH HOH . 
P 7 HOH A 23 423 13 HOH HOH . 
P 7 HOH A 24 424 101 HOH HOH . 
P 7 HOH A 25 425 110 HOH HOH . 
P 7 HOH A 26 426 34 HOH HOH . 
P 7 HOH A 27 427 103 HOH HOH . 
P 7 HOH A 28 428 76 HOH HOH . 
P 7 HOH A 29 429 17 HOH HOH . 
P 7 HOH A 30 430 50 HOH HOH . 
P 7 HOH A 31 431 85 HOH HOH . 
P 7 HOH A 32 432 46 HOH HOH . 
P 7 HOH A 33 433 117 HOH HOH . 
P 7 HOH A 34 434 59 HOH HOH . 
P 7 HOH A 35 435 81 HOH HOH . 
P 7 HOH A 36 436 2 HOH HOH . 
P 7 HOH A 37 437 63 HOH HOH . 
P 7 HOH A 38 438 42 HOH HOH . 
P 7 HOH A 39 439 16 HOH HOH . 
P 7 HOH A 40 440 18 HOH HOH . 
P 7 HOH A 41 441 38 HOH HOH . 
P 7 HOH A 42 442 83 HOH HOH . 
P 7 HOH A 43 443 21 HOH HOH . 
P 7 HOH A 44 444 64 HOH HOH . 
P 7 HOH A 45 445 106 HOH HOH . 
P 7 HOH A 46 446 108 HOH HOH . 
P 7 HOH A 47 447 124 HOH HOH . 
P 7 HOH A 48 448 91 HOH HOH . 
P 7 HOH A 49 449 33 HOH HOH . 
P 7 HOH A 50 450 52 HOH HOH . 
P 7 HOH A 51 451 58 HOH HOH . 
P 7 HOH A 52 452 74 HOH HOH . 
P 7 HOH A 53 453 95 HOH HOH . 
P 7 HOH A 54 454 70 HOH HOH . 
P 7 HOH A 55 455 20 HOH HOH . 
P 7 HOH A 56 456 24 HOH HOH . 
P 7 HOH A 57 457 51 HOH HOH . 
P 7 HOH A 58 458 112 HOH HOH . 
P 7 HOH A 59 459 118 HOH HOH . 
P 7 HOH A 60 460 60 HOH HOH . 
P 7 HOH A 61 461 120 HOH HOH . 
P 7 HOH A 62 462 122 HOH HOH . 
Q 7 HOH B 1 401 115 HOH HOH . 
Q 7 HOH B 2 402 127 HOH HOH . 
Q 7 HOH B 3 403 104 HOH HOH . 
Q 7 HOH B 4 404 80 HOH HOH . 
Q 7 HOH B 5 405 79 HOH HOH . 
Q 7 HOH B 6 406 125 HOH HOH . 
Q 7 HOH B 7 407 100 HOH HOH . 
Q 7 HOH B 8 408 109 HOH HOH . 
Q 7 HOH B 9 409 68 HOH HOH . 
Q 7 HOH B 10 410 62 HOH HOH . 
Q 7 HOH B 11 411 14 HOH HOH . 
Q 7 HOH B 12 412 47 HOH HOH . 
Q 7 HOH B 13 413 67 HOH HOH . 
Q 7 HOH B 14 414 9 HOH HOH . 
Q 7 HOH B 15 415 5 HOH HOH . 
Q 7 HOH B 16 416 7 HOH HOH . 
Q 7 HOH B 17 417 29 HOH HOH . 
Q 7 HOH B 18 418 114 HOH HOH . 
Q 7 HOH B 19 419 43 HOH HOH . 
Q 7 HOH B 20 420 23 HOH HOH . 
Q 7 HOH B 21 421 96 HOH HOH . 
Q 7 HOH B 22 422 39 HOH HOH . 
Q 7 HOH B 23 423 84 HOH HOH . 
Q 7 HOH B 24 424 10 HOH HOH . 
Q 7 HOH B 25 425 37 HOH HOH . 
Q 7 HOH B 26 426 116 HOH HOH . 
Q 7 HOH B 27 427 93 HOH HOH . 
Q 7 HOH B 28 428 113 HOH HOH . 
Q 7 HOH B 29 429 107 HOH HOH . 
Q 7 HOH B 30 430 86 HOH HOH . 
Q 7 HOH B 31 431 44 HOH HOH . 
Q 7 HOH B 32 432 105 HOH HOH . 
Q 7 HOH B 33 433 40 HOH HOH . 
Q 7 HOH B 34 434 87 HOH HOH . 
Q 7 HOH B 35 435 1 HOH HOH . 
Q 7 HOH B 36 436 41 HOH HOH . 
Q 7 HOH B 37 437 111 HOH HOH . 
Q 7 HOH B 38 438 31 HOH HOH . 
Q 7 HOH B 39 439 48 HOH HOH . 
Q 7 HOH B 40 440 11 HOH HOH . 
Q 7 HOH B 41 441 15 HOH HOH . 
Q 7 HOH B 42 442 8 HOH HOH . 
Q 7 HOH B 43 443 35 HOH HOH . 
Q 7 HOH B 44 444 53 HOH HOH . 
Q 7 HOH B 45 445 26 HOH HOH . 
Q 7 HOH B 46 446 32 HOH HOH . 
Q 7 HOH B 47 447 97 HOH HOH . 
Q 7 HOH B 48 448 12 HOH HOH . 
Q 7 HOH B 49 449 66 HOH HOH . 
Q 7 HOH B 50 450 77 HOH HOH . 
Q 7 HOH B 51 451 28 HOH HOH . 
Q 7 HOH B 52 452 3 HOH HOH . 
Q 7 HOH B 53 453 69 HOH HOH . 
Q 7 HOH B 54 454 89 HOH HOH . 
Q 7 HOH B 55 455 90 HOH HOH . 
Q 7 HOH B 56 456 88 HOH HOH . 
Q 7 HOH B 57 457 98 HOH HOH . 
Q 7 HOH B 58 458 126 HOH HOH . 
Q 7 HOH B 59 459 102 HOH HOH . 
Q 7 HOH B 60 460 19 HOH HOH . 
Q 7 HOH B 61 461 73 HOH HOH . 
Q 7 HOH B 62 462 22 HOH HOH . 
Q 7 HOH B 63 463 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 VFF . . . C 2 6.202 8.848 26.222 1 27 ? C10 VFF 301 A 1 
HETATM 2 C C13 VFF . . . C 2 9.625 5.175 28.548 1 26.2 ? C13 VFF 301 A 1 
HETATM 3 C C15 VFF . . . C 2 7.96 6.131 30.059 1 28.53 ? C15 VFF 301 A 1 
HETATM 4 C C17 VFF . . . C 2 8.458 7.397 32.137 1 31.66 ? C17 VFF 301 A 1 
HETATM 5 C C21 VFF . . . C 2 10.237 6.434 30.573 1 29.9 ? C21 VFF 301 A 1 
HETATM 6 C C22 VFF . . . C 2 10.587 5.708 29.415 1 26.42 ? C22 VFF 301 A 1 
HETATM 7 C C02 VFF . . . C 2 11.251 2.652 26.422 1 22.75 ? C02 VFF 301 A 1 
HETATM 8 C C04 VFF . . . C 2 10.102 4.05 24.937 1 21.55 ? C04 VFF 301 A 1 
HETATM 9 C C06 VFF . . . C 2 9.635 4.825 26.026 1 23.47 ? C06 VFF 301 A 1 
HETATM 10 C C07 VFF . . . C 2 8.81 5.923 25.799 1 23.15 ? C07 VFF 301 A 1 
HETATM 11 C C08 VFF . . . C 2 8.157 6.891 25.748 1 22.59 ? C08 VFF 301 A 1 
HETATM 12 C C09 VFF . . . C 2 7.441 8.098 25.822 1 23.7 ? C09 VFF 301 A 1 
HETATM 13 C C11 VFF . . . C 2 7.482 9.578 25.736 1 30.5 ? C11 VFF 301 A 1 
HETATM 14 C C12 VFF . . . C 2 10.025 4.419 27.297 1 22.65 ? C12 VFF 301 A 1 
HETATM 15 C C14 VFF . . . C 2 8.305 5.413 28.918 1 28.06 ? C14 VFF 301 A 1 
HETATM 16 C C16 VFF . . . C 2 8.91 6.652 30.922 1 28.72 ? C16 VFF 301 A 1 
HETATM 17 C C19 VFF . . . C 2 8.936 8.531 34.173 1 36.02 ? C19 VFF 301 A 1 
HETATM 18 N N01 VFF . . . C 2 12.083 1.539 26.57 1 22.09 ? N01 VFF 301 A 1 
HETATM 19 N N03 VFF . . . C 2 10.916 2.946 25.107 1 20.82 ? N03 VFF 301 A 1 
HETATM 20 N N05 VFF . . . C 2 9.791 4.313 23.648 1 21.15 ? N05 VFF 301 A 1 
HETATM 21 N N23 VFF . . . C 2 10.837 3.37 27.529 1 23.64 ? N23 VFF 301 A 1 
HETATM 22 O O18 VFF . . . C 2 9.389 7.819 33.022 1 36.83 ? O18 VFF 301 A 1 
HETATM 23 O O20 VFF . . . C 2 7.299 7.659 32.405 1 35.09 ? O20 VFF 301 A 1 
#
_model_server_stats.io_time_ms              103 
_model_server_stats.parse_time_ms           25 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           23 
#