data_8CQA
#
_model_server_result.job_id            d43kG_oV-3cBRGR0W3SV-w 
_model_server_result.datetime_utc      '2024-11-30 04:09:40' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cqa 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    8CQA 
#
_exptl.entry_id    8CQA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              311.382 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ~{N}-[4-[2,6-bis(azanyl)-5-(2-cyclopropylethyl)pyrimidin-4-yl]phenyl]ethanamide 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8CQA 
_cell.length_a            61.349 
_cell.length_b            72.058 
_cell.length_c            72.248 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CQA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 157 A HIS 157 1_555 F CO CO . A CO 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? 
metalc ? metalc2 E CO CO . A CO 303 1_555 B NE2 HIS 157 B HIS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? 
metalc ? metalc3 F CO CO . A CO 304 1_555 B NE2 HIS 38 B HIS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? 
#
_chem_comp.formula           'C17 H21 N5 O' 
_chem_comp.formula_weight    311.382 
_chem_comp.id                VF6 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ~{N}-[4-[2,6-bis(azanyl)-5-(2-cyclopropylethyl)pyrimidin-4-yl]phenyl]ethanamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N05 C04 VF6 sing 487 n n 
C10 C09 VF6 sing 488 n n 
C10 C11 VF6 sing 489 n n 
C04 N03 VF6 doub 490 n y 
C04 C06 VF6 sing 491 n y 
N03 C02 VF6 sing 492 n y 
C09 C08 VF6 sing 493 n n 
C09 C11 VF6 sing 494 n n 
C07 C08 VF6 sing 495 n n 
C07 C06 VF6 sing 496 n n 
C06 C12 VF6 doub 497 n y 
C02 N01 VF6 sing 498 n n 
C02 N23 VF6 doub 499 n y 
C12 N23 VF6 sing 500 n y 
C12 C13 VF6 sing 501 n n 
C13 C22 VF6 doub 502 n y 
C13 C14 VF6 sing 503 n y 
C22 C21 VF6 sing 504 n y 
C14 C15 VF6 doub 505 n y 
C21 C16 VF6 doub 506 n y 
C15 C16 VF6 sing 507 n y 
C16 N17 VF6 sing 508 n n 
N17 C18 VF6 sing 509 n n 
C18 C19 VF6 sing 510 n n 
C18 O20 VF6 doub 511 n n 
C10 H1 VF6 sing 512 n n 
C10 H2 VF6 sing 513 n n 
C15 H3 VF6 sing 514 n n 
C21 H4 VF6 sing 515 n n 
C22 H5 VF6 sing 516 n n 
C07 H6 VF6 sing 517 n n 
C07 H7 VF6 sing 518 n n 
C08 H8 VF6 sing 519 n n 
C08 H9 VF6 sing 520 n n 
C09 H10 VF6 sing 521 n n 
C11 H11 VF6 sing 522 n n 
C11 H12 VF6 sing 523 n n 
C14 H13 VF6 sing 524 n n 
C19 H14 VF6 sing 525 n n 
C19 H15 VF6 sing 526 n n 
C19 H16 VF6 sing 527 n n 
N01 H17 VF6 sing 528 n n 
N01 H18 VF6 sing 529 n n 
N05 H19 VF6 sing 530 n n 
N05 H20 VF6 sing 531 n n 
N17 H21 VF6 sing 532 n n 
#
_atom_sites.entry_id                     8CQA 
_atom_sites.fract_transf_matrix[1][1]    0.0163 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013878 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013841 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 VF6 A 1 301 301 VF6 LIG . 
D 3 NDP A 1 302 201 NDP NDP . 
E 4 CO A 1 303 1 CO CO . 
F 4 CO A 1 304 2 CO CO . 
G 5 SO4 A 1 305 2 SO4 SO4 . 
H 5 SO4 A 1 306 3 SO4 SO4 . 
I 5 SO4 A 1 307 5 SO4 SO4 . 
J 2 VF6 B 1 301 301 VF6 LIG . 
K 6 MES B 1 302 401 MES MES . 
L 3 NDP B 1 303 201 NDP NDP . 
M 5 SO4 B 1 304 4 SO4 SO4 . 
N 7 HOH A 1 401 44 HOH HOH . 
N 7 HOH A 2 402 13 HOH HOH . 
N 7 HOH A 3 403 1 HOH HOH . 
N 7 HOH A 4 404 41 HOH HOH . 
N 7 HOH A 5 405 20 HOH HOH . 
N 7 HOH A 6 406 5 HOH HOH . 
N 7 HOH A 7 407 32 HOH HOH . 
N 7 HOH A 8 408 23 HOH HOH . 
N 7 HOH A 9 409 39 HOH HOH . 
N 7 HOH A 10 410 12 HOH HOH . 
N 7 HOH A 11 411 46 HOH HOH . 
N 7 HOH A 12 412 4 HOH HOH . 
N 7 HOH A 13 413 8 HOH HOH . 
N 7 HOH A 14 414 35 HOH HOH . 
N 7 HOH A 15 415 2 HOH HOH . 
N 7 HOH A 16 416 50 HOH HOH . 
N 7 HOH A 17 417 48 HOH HOH . 
N 7 HOH A 18 418 34 HOH HOH . 
N 7 HOH A 19 419 18 HOH HOH . 
N 7 HOH A 20 420 45 HOH HOH . 
N 7 HOH A 21 421 16 HOH HOH . 
N 7 HOH A 22 422 21 HOH HOH . 
N 7 HOH A 23 423 49 HOH HOH . 
N 7 HOH A 24 424 47 HOH HOH . 
N 7 HOH A 25 425 37 HOH HOH . 
N 7 HOH A 26 426 15 HOH HOH . 
N 7 HOH A 27 427 24 HOH HOH . 
N 7 HOH A 28 428 52 HOH HOH . 
N 7 HOH A 29 429 51 HOH HOH . 
N 7 HOH A 30 430 6 HOH HOH . 
O 7 HOH B 1 401 43 HOH HOH . 
O 7 HOH B 2 402 30 HOH HOH . 
O 7 HOH B 3 403 11 HOH HOH . 
O 7 HOH B 4 404 26 HOH HOH . 
O 7 HOH B 5 405 28 HOH HOH . 
O 7 HOH B 6 406 31 HOH HOH . 
O 7 HOH B 7 407 22 HOH HOH . 
O 7 HOH B 8 408 29 HOH HOH . 
O 7 HOH B 9 409 3 HOH HOH . 
O 7 HOH B 10 410 9 HOH HOH . 
O 7 HOH B 11 411 14 HOH HOH . 
O 7 HOH B 12 412 10 HOH HOH . 
O 7 HOH B 13 413 17 HOH HOH . 
O 7 HOH B 14 414 42 HOH HOH . 
O 7 HOH B 15 415 19 HOH HOH . 
O 7 HOH B 16 416 40 HOH HOH . 
O 7 HOH B 17 417 33 HOH HOH . 
O 7 HOH B 18 418 25 HOH HOH . 
O 7 HOH B 19 419 36 HOH HOH . 
O 7 HOH B 20 420 38 HOH HOH . 
O 7 HOH B 21 421 27 HOH HOH . 
O 7 HOH B 22 422 54 HOH HOH . 
O 7 HOH B 23 423 7 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C10 VF6 . . . C 2 7.036 9.098 24.12 1 33.99 ? C10 VF6 301 A 1 
HETATM 2 C C13 VF6 . . . C 2 10.088 5.837 27.971 1 28.66 ? C13 VF6 301 A 1 
HETATM 3 C C15 VF6 . . . C 2 10.807 7.104 29.87 1 33.53 ? C15 VF6 301 A 1 
HETATM 4 C C21 VF6 . . . C 2 8.468 6.938 29.385 1 34.97 ? C21 VF6 301 A 1 
HETATM 5 C C22 VF6 . . . C 2 8.768 6.135 28.298 1 37.51 ? C22 VF6 301 A 1 
HETATM 6 C C02 VF6 . . . C 2 11.591 3.187 25.967 1 23.16 ? C02 VF6 301 A 1 
HETATM 7 C C04 VF6 . . . C 2 10.434 4.394 24.438 1 26.21 ? C04 VF6 301 A 1 
HETATM 8 C C06 VF6 . . . C 2 10 5.237 25.458 1 27.04 ? C06 VF6 301 A 1 
HETATM 9 C C07 VF6 . . . C 2 9.14 6.479 25.196 1 28.73 ? C07 VF6 301 A 1 
HETATM 10 C C08 VF6 . . . C 2 7.846 6.687 25.355 1 34.22 ? C08 VF6 301 A 1 
HETATM 11 C C09 VF6 . . . C 2 7.409 8.123 25.029 1 32.18 ? C09 VF6 301 A 1 
HETATM 12 C C11 VF6 . . . C 2 7.157 9.426 25.459 1 31.47 ? C11 VF6 301 A 1 
HETATM 13 C C12 VF6 . . . C 2 10.442 4.98 26.757 1 26.19 ? C12 VF6 301 A 1 
HETATM 14 C C14 VF6 . . . C 2 11.109 6.317 28.768 1 30.27 ? C14 VF6 301 A 1 
HETATM 15 C C16 VF6 . . . C 2 9.495 7.402 30.192 1 34.46 ? C16 VF6 301 A 1 
HETATM 16 C C18 VF6 . . . C 2 8.266 7.988 32.413 1 42.28 ? C18 VF6 301 A 1 
HETATM 17 C C19 VF6 . . . C 2 7.375 6.728 32.458 1 47.79 ? C19 VF6 301 A 1 
HETATM 18 N N01 VF6 . . . C 2 12.426 2.043 26.264 1 26.61 ? N01 VF6 301 A 1 
HETATM 19 N N03 VF6 . . . C 2 11.206 3.381 24.728 1 28.18 ? N03 VF6 301 A 1 
HETATM 20 N N05 VF6 . . . C 2 10.06 4.527 23.038 1 27.68 ? N05 VF6 301 A 1 
HETATM 21 N N17 VF6 . . . C 2 9.23 8.255 31.356 1 42.59 ? N17 VF6 301 A 1 
HETATM 22 N N23 VF6 . . . C 2 11.234 3.968 26.955 1 27.47 ? N23 VF6 301 A 1 
HETATM 23 O O20 VF6 . . . C 2 8.189 8.806 33.258 1 45.65 ? O20 VF6 301 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           238 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           23 
#