data_8CQA # _model_server_result.job_id Fdi0KYhmDrerKqFIdw_csg _model_server_result.datetime_utc '2024-11-26 19:47:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cqa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 8CQA # _exptl.entry_id 8CQA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 311.382 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[4-[2,6-bis(azanyl)-5-(2-cyclopropylethyl)pyrimidin-4-yl]phenyl]ethanamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CQA _cell.length_a 61.349 _cell.length_b 72.058 _cell.length_c 72.248 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CQA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 157 A HIS 157 1_555 F CO CO . A CO 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? metalc ? metalc2 E CO CO . A CO 303 1_555 B NE2 HIS 157 B HIS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc3 F CO CO . A CO 304 1_555 B NE2 HIS 38 B HIS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? # _chem_comp.formula 'C17 H21 N5 O' _chem_comp.formula_weight 311.382 _chem_comp.id VF6 _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[4-[2,6-bis(azanyl)-5-(2-cyclopropylethyl)pyrimidin-4-yl]phenyl]ethanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N05 C04 VF6 sing 487 n n C10 C09 VF6 sing 488 n n C10 C11 VF6 sing 489 n n C04 N03 VF6 doub 490 n y C04 C06 VF6 sing 491 n y N03 C02 VF6 sing 492 n y C09 C08 VF6 sing 493 n n C09 C11 VF6 sing 494 n n C07 C08 VF6 sing 495 n n C07 C06 VF6 sing 496 n n C06 C12 VF6 doub 497 n y C02 N01 VF6 sing 498 n n C02 N23 VF6 doub 499 n y C12 N23 VF6 sing 500 n y C12 C13 VF6 sing 501 n n C13 C22 VF6 doub 502 n y C13 C14 VF6 sing 503 n y C22 C21 VF6 sing 504 n y C14 C15 VF6 doub 505 n y C21 C16 VF6 doub 506 n y C15 C16 VF6 sing 507 n y C16 N17 VF6 sing 508 n n N17 C18 VF6 sing 509 n n C18 C19 VF6 sing 510 n n C18 O20 VF6 doub 511 n n C10 H1 VF6 sing 512 n n C10 H2 VF6 sing 513 n n C15 H3 VF6 sing 514 n n C21 H4 VF6 sing 515 n n C22 H5 VF6 sing 516 n n C07 H6 VF6 sing 517 n n C07 H7 VF6 sing 518 n n C08 H8 VF6 sing 519 n n C08 H9 VF6 sing 520 n n C09 H10 VF6 sing 521 n n C11 H11 VF6 sing 522 n n C11 H12 VF6 sing 523 n n C14 H13 VF6 sing 524 n n C19 H14 VF6 sing 525 n n C19 H15 VF6 sing 526 n n C19 H16 VF6 sing 527 n n N01 H17 VF6 sing 528 n n N01 H18 VF6 sing 529 n n N05 H19 VF6 sing 530 n n N05 H20 VF6 sing 531 n n N17 H21 VF6 sing 532 n n # _atom_sites.entry_id 8CQA _atom_sites.fract_transf_matrix[1][1] 0.0163 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013841 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VF6 A 1 301 301 VF6 LIG . D 3 NDP A 1 302 201 NDP NDP . E 4 CO A 1 303 1 CO CO . F 4 CO A 1 304 2 CO CO . G 5 SO4 A 1 305 2 SO4 SO4 . H 5 SO4 A 1 306 3 SO4 SO4 . I 5 SO4 A 1 307 5 SO4 SO4 . J 2 VF6 B 1 301 301 VF6 LIG . K 6 MES B 1 302 401 MES MES . L 3 NDP B 1 303 201 NDP NDP . M 5 SO4 B 1 304 4 SO4 SO4 . N 7 HOH A 1 401 44 HOH HOH . N 7 HOH A 2 402 13 HOH HOH . N 7 HOH A 3 403 1 HOH HOH . N 7 HOH A 4 404 41 HOH HOH . N 7 HOH A 5 405 20 HOH HOH . N 7 HOH A 6 406 5 HOH HOH . N 7 HOH A 7 407 32 HOH HOH . N 7 HOH A 8 408 23 HOH HOH . N 7 HOH A 9 409 39 HOH HOH . N 7 HOH A 10 410 12 HOH HOH . N 7 HOH A 11 411 46 HOH HOH . N 7 HOH A 12 412 4 HOH HOH . N 7 HOH A 13 413 8 HOH HOH . N 7 HOH A 14 414 35 HOH HOH . N 7 HOH A 15 415 2 HOH HOH . N 7 HOH A 16 416 50 HOH HOH . N 7 HOH A 17 417 48 HOH HOH . N 7 HOH A 18 418 34 HOH HOH . N 7 HOH A 19 419 18 HOH HOH . N 7 HOH A 20 420 45 HOH HOH . N 7 HOH A 21 421 16 HOH HOH . N 7 HOH A 22 422 21 HOH HOH . N 7 HOH A 23 423 49 HOH HOH . N 7 HOH A 24 424 47 HOH HOH . N 7 HOH A 25 425 37 HOH HOH . N 7 HOH A 26 426 15 HOH HOH . N 7 HOH A 27 427 24 HOH HOH . N 7 HOH A 28 428 52 HOH HOH . N 7 HOH A 29 429 51 HOH HOH . N 7 HOH A 30 430 6 HOH HOH . O 7 HOH B 1 401 43 HOH HOH . O 7 HOH B 2 402 30 HOH HOH . O 7 HOH B 3 403 11 HOH HOH . O 7 HOH B 4 404 26 HOH HOH . O 7 HOH B 5 405 28 HOH HOH . O 7 HOH B 6 406 31 HOH HOH . O 7 HOH B 7 407 22 HOH HOH . O 7 HOH B 8 408 29 HOH HOH . O 7 HOH B 9 409 3 HOH HOH . O 7 HOH B 10 410 9 HOH HOH . O 7 HOH B 11 411 14 HOH HOH . O 7 HOH B 12 412 10 HOH HOH . O 7 HOH B 13 413 17 HOH HOH . O 7 HOH B 14 414 42 HOH HOH . O 7 HOH B 15 415 19 HOH HOH . O 7 HOH B 16 416 40 HOH HOH . O 7 HOH B 17 417 33 HOH HOH . O 7 HOH B 18 418 25 HOH HOH . O 7 HOH B 19 419 36 HOH HOH . O 7 HOH B 20 420 38 HOH HOH . O 7 HOH B 21 421 27 HOH HOH . O 7 HOH B 22 422 54 HOH HOH . O 7 HOH B 23 423 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 VF6 . . . J 2 38.647 -7.561 7.824 1 35.19 ? C10 VF6 301 B 1 HETATM 2 C C13 VF6 . . . J 2 36.332 -9.626 11.802 1 32.08 ? C13 VF6 301 B 1 HETATM 3 C C15 VF6 . . . J 2 37.955 -11.192 10.924 1 32.74 ? C15 VF6 301 B 1 HETATM 4 C C21 VF6 . . . J 2 35.589 -11.491 10.492 1 35.1 ? C21 VF6 301 B 1 HETATM 5 C C22 VF6 . . . J 2 35.296 -10.343 11.213 1 32.95 ? C22 VF6 301 B 1 HETATM 6 C C02 VF6 . . . J 2 34.902 -7.298 14.261 1 26.45 ? C02 VF6 301 B 1 HETATM 7 C C04 VF6 . . . J 2 36.03 -5.983 12.81 1 29.85 ? C04 VF6 301 B 1 HETATM 8 C C06 VF6 . . . J 2 36.394 -7.116 12.102 1 30.97 ? C06 VF6 301 B 1 HETATM 9 C C07 VF6 . . . J 2 37.271 -7.158 10.838 1 29.88 ? C07 VF6 301 B 1 HETATM 10 C C08 VF6 . . . J 2 37.927 -6.215 10.188 1 33.59 ? C08 VF6 301 B 1 HETATM 11 C C09 VF6 . . . J 2 38.674 -6.816 8.991 1 30.17 ? C09 VF6 301 B 1 HETATM 12 C C11 VF6 . . . J 2 39.847 -7.095 8.314 1 35.15 ? C11 VF6 301 B 1 HETATM 13 C C12 VF6 . . . J 2 35.975 -8.356 12.572 1 29.39 ? C12 VF6 301 B 1 HETATM 14 C C14 VF6 . . . J 2 37.653 -10.05 11.651 1 36.18 ? C14 VF6 301 B 1 HETATM 15 C C16 VF6 . . . J 2 36.913 -11.903 10.363 1 35.03 ? C16 VF6 301 B 1 HETATM 16 C C18 VF6 . . . J 2 37.022 -14.42 10.157 1 40.41 ? C18 VF6 301 B 1 HETATM 17 C C19 VF6 . . . J 2 36.491 -14.627 11.596 1 41.67 ? C19 VF6 301 B 1 HETATM 18 N N01 VF6 . . . J 2 34.085 -7.438 15.44 1 31.87 ? N01 VF6 301 B 1 HETATM 19 N N03 VF6 . . . J 2 35.276 -6.102 13.88 1 31.25 ? N03 VF6 301 B 1 HETATM 20 N N05 VF6 . . . J 2 36.457 -4.655 12.413 1 32.27 ? N05 VF6 301 B 1 HETATM 21 N N17 VF6 . . . J 2 37.216 -13.096 9.597 1 38.67 ? N17 VF6 301 B 1 HETATM 22 N N23 VF6 . . . J 2 35.224 -8.402 13.632 1 30.83 ? N23 VF6 301 B 1 HETATM 23 O O20 VF6 . . . J 2 37.269 -15.335 9.451 1 43.46 ? O20 VF6 301 B 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 37 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 1150 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 23 #