data_8CQA # _model_server_result.job_id OSiSduLiKZbtCqymFyNl_g _model_server_result.datetime_utc '2024-11-15 01:50:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cqa # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 8CQA # _exptl.entry_id 8CQA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CQA _cell.length_a 61.349 _cell.length_b 72.058 _cell.length_c 72.248 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CQA _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 157 A HIS 157 1_555 F CO CO . A CO 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.866 ? metalc ? metalc2 E CO CO . A CO 303 1_555 B NE2 HIS 157 B HIS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc3 F CO CO . A CO 304 1_555 B NE2 HIS 38 B HIS 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 262 n n PA O2A NDP sing 263 n n PA O5B NDP sing 264 n n PA O3 NDP sing 265 n n O2A HOA2 NDP sing 266 n n O5B C5B NDP sing 267 n n C5B C4B NDP sing 268 n n C5B H51A NDP sing 269 n n C5B H52A NDP sing 270 n n C4B O4B NDP sing 271 n n C4B C3B NDP sing 272 n n C4B H4B NDP sing 273 n n O4B C1B NDP sing 274 n n C3B O3B NDP sing 275 n n C3B C2B NDP sing 276 n n C3B H3B NDP sing 277 n n O3B HO3A NDP sing 278 n n C2B O2B NDP sing 279 n n C2B C1B NDP sing 280 n n C2B H2B NDP sing 281 n n O2B P2B NDP sing 282 n n C1B N9A NDP sing 283 n n C1B H1B NDP sing 284 n n N9A C8A NDP sing 285 n y N9A C4A NDP sing 286 n y C8A N7A NDP doub 287 n y C8A H8A NDP sing 288 n n N7A C5A NDP sing 289 n y C5A C6A NDP sing 290 n y C5A C4A NDP doub 291 n y C6A N6A NDP sing 292 n n C6A N1A NDP doub 293 n y N6A H61A NDP sing 294 n n N6A H62A NDP sing 295 n n N1A C2A NDP sing 296 n y C2A N3A NDP doub 297 n y C2A H2A NDP sing 298 n n N3A C4A NDP sing 299 n y O3 PN NDP sing 300 n n PN O1N NDP doub 301 n n PN O2N NDP sing 302 n n PN O5D NDP sing 303 n n O2N H21N NDP sing 304 n n O5D C5D NDP sing 305 n n C5D C4D NDP sing 306 n n C5D H51N NDP sing 307 n n C5D H52N NDP sing 308 n n C4D O4D NDP sing 309 n n C4D C3D NDP sing 310 n n C4D H4D NDP sing 311 n n O4D C1D NDP sing 312 n n C3D O3D NDP sing 313 n n C3D C2D NDP sing 314 n n C3D H3D NDP sing 315 n n O3D HO3N NDP sing 316 n n C2D O2D NDP sing 317 n n C2D C1D NDP sing 318 n n C2D H2D NDP sing 319 n n O2D HO2N NDP sing 320 n n C1D N1N NDP sing 321 n n C1D H1D NDP sing 322 n n N1N C2N NDP sing 323 n n N1N C6N NDP sing 324 n n C2N C3N NDP doub 325 n n C2N H2N NDP sing 326 n n C3N C7N NDP sing 327 n n C3N C4N NDP sing 328 n n C7N O7N NDP doub 329 n n C7N N7N NDP sing 330 n n N7N H71N NDP sing 331 n n N7N H72N NDP sing 332 n n C4N C5N NDP sing 333 n n C4N H41N NDP sing 334 n n C4N H42N NDP sing 335 n n C5N C6N NDP doub 336 n n C5N H5N NDP sing 337 n n C6N H6N NDP sing 338 n n P2B O1X NDP doub 339 n n P2B O2X NDP sing 340 n n P2B O3X NDP sing 341 n n O2X HOP2 NDP sing 342 n n O3X HOP3 NDP sing 343 n n # _atom_sites.entry_id 8CQA _atom_sites.fract_transf_matrix[1][1] 0.0163 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013878 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013841 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 VF6 A 1 301 301 VF6 LIG . D 3 NDP A 1 302 201 NDP NDP . E 4 CO A 1 303 1 CO CO . F 4 CO A 1 304 2 CO CO . G 5 SO4 A 1 305 2 SO4 SO4 . H 5 SO4 A 1 306 3 SO4 SO4 . I 5 SO4 A 1 307 5 SO4 SO4 . J 2 VF6 B 1 301 301 VF6 LIG . K 6 MES B 1 302 401 MES MES . L 3 NDP B 1 303 201 NDP NDP . M 5 SO4 B 1 304 4 SO4 SO4 . N 7 HOH A 1 401 44 HOH HOH . N 7 HOH A 2 402 13 HOH HOH . N 7 HOH A 3 403 1 HOH HOH . N 7 HOH A 4 404 41 HOH HOH . N 7 HOH A 5 405 20 HOH HOH . N 7 HOH A 6 406 5 HOH HOH . N 7 HOH A 7 407 32 HOH HOH . N 7 HOH A 8 408 23 HOH HOH . N 7 HOH A 9 409 39 HOH HOH . N 7 HOH A 10 410 12 HOH HOH . N 7 HOH A 11 411 46 HOH HOH . N 7 HOH A 12 412 4 HOH HOH . N 7 HOH A 13 413 8 HOH HOH . N 7 HOH A 14 414 35 HOH HOH . N 7 HOH A 15 415 2 HOH HOH . N 7 HOH A 16 416 50 HOH HOH . N 7 HOH A 17 417 48 HOH HOH . N 7 HOH A 18 418 34 HOH HOH . N 7 HOH A 19 419 18 HOH HOH . N 7 HOH A 20 420 45 HOH HOH . N 7 HOH A 21 421 16 HOH HOH . N 7 HOH A 22 422 21 HOH HOH . N 7 HOH A 23 423 49 HOH HOH . N 7 HOH A 24 424 47 HOH HOH . N 7 HOH A 25 425 37 HOH HOH . N 7 HOH A 26 426 15 HOH HOH . N 7 HOH A 27 427 24 HOH HOH . N 7 HOH A 28 428 52 HOH HOH . N 7 HOH A 29 429 51 HOH HOH . N 7 HOH A 30 430 6 HOH HOH . O 7 HOH B 1 401 43 HOH HOH . O 7 HOH B 2 402 30 HOH HOH . O 7 HOH B 3 403 11 HOH HOH . O 7 HOH B 4 404 26 HOH HOH . O 7 HOH B 5 405 28 HOH HOH . O 7 HOH B 6 406 31 HOH HOH . O 7 HOH B 7 407 22 HOH HOH . O 7 HOH B 8 408 29 HOH HOH . O 7 HOH B 9 409 3 HOH HOH . O 7 HOH B 10 410 9 HOH HOH . O 7 HOH B 11 411 14 HOH HOH . O 7 HOH B 12 412 10 HOH HOH . O 7 HOH B 13 413 17 HOH HOH . O 7 HOH B 14 414 42 HOH HOH . O 7 HOH B 15 415 19 HOH HOH . O 7 HOH B 16 416 40 HOH HOH . O 7 HOH B 17 417 33 HOH HOH . O 7 HOH B 18 418 25 HOH HOH . O 7 HOH B 19 419 36 HOH HOH . O 7 HOH B 20 420 38 HOH HOH . O 7 HOH B 21 421 27 HOH HOH . O 7 HOH B 22 422 54 HOH HOH . O 7 HOH B 23 423 7 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . D 3 0.141 7.413 18.793 1 38.05 ? PA NDP 302 A 1 HETATM 2 O O1A NDP . . . D 3 0.569 6.476 17.726 1 42.27 ? O1A NDP 302 A 1 HETATM 3 O O2A NDP . . . D 3 1.066 7.855 19.889 1 42.5 -1 O2A NDP 302 A 1 HETATM 4 O O5B NDP . . . D 3 -0.364 8.761 18.095 1 40.22 ? O5B NDP 302 A 1 HETATM 5 C C5B NDP . . . D 3 -1.189 8.348 17.053 1 42.01 ? C5B NDP 302 A 1 HETATM 6 C C4B NDP . . . D 3 -1.541 9.612 16.26 1 41.96 ? C4B NDP 302 A 1 HETATM 7 O O4B NDP . . . D 3 -0.535 9.905 15.333 1 43.59 ? O4B NDP 302 A 1 HETATM 8 C C3B NDP . . . D 3 -2.873 9.5 15.477 1 44.36 ? C3B NDP 302 A 1 HETATM 9 O O3B NDP . . . D 3 -3.919 9.795 16.293 1 44.31 ? O3B NDP 302 A 1 HETATM 10 C C2B NDP . . . D 3 -2.695 10.705 14.557 1 45.27 ? C2B NDP 302 A 1 HETATM 11 O O2B NDP . . . D 3 -2.759 11.893 15.203 1 49.15 ? O2B NDP 302 A 1 HETATM 12 C C1B NDP . . . D 3 -1.173 10.459 14.172 1 42.39 ? C1B NDP 302 A 1 HETATM 13 N N9A NDP . . . D 3 -0.901 9.529 13.027 1 43.05 ? N9A NDP 302 A 1 HETATM 14 C C8A NDP . . . D 3 -0.943 8.136 13.007 1 41.83 ? C8A NDP 302 A 1 HETATM 15 N N7A NDP . . . D 3 -0.609 7.608 11.815 1 42.35 ? N7A NDP 302 A 1 HETATM 16 C C5A NDP . . . D 3 -0.322 8.733 11.025 1 40.87 ? C5A NDP 302 A 1 HETATM 17 C C6A NDP . . . D 3 0.087 8.864 9.709 1 44.94 ? C6A NDP 302 A 1 HETATM 18 N N6A NDP . . . D 3 0.271 7.752 8.926 1 52.58 ? N6A NDP 302 A 1 HETATM 19 N N1A NDP . . . D 3 0.315 10.065 9.151 1 45.63 ? N1A NDP 302 A 1 HETATM 20 C C2A NDP . . . D 3 0.106 11.118 9.956 1 44.15 ? C2A NDP 302 A 1 HETATM 21 N N3A NDP . . . D 3 -0.273 11.167 11.216 1 49.27 ? N3A NDP 302 A 1 HETATM 22 C C4A NDP . . . D 3 -0.487 9.922 11.75 1 42.9 ? C4A NDP 302 A 1 HETATM 23 O O3 NDP . . . D 3 -1.21 6.672 19.464 1 38.56 ? O3 NDP 302 A 1 HETATM 24 P PN NDP . . . D 3 -0.956 5.295 20.294 1 41.76 ? PN NDP 302 A 1 HETATM 25 O O1N NDP . . . D 3 -2.064 5.134 21.249 1 42.07 ? O1N NDP 302 A 1 HETATM 26 O O2N NDP . . . D 3 -0.485 4.119 19.471 1 44.02 -1 O2N NDP 302 A 1 HETATM 27 O O5D NDP . . . D 3 0.294 5.437 21.51 1 41.59 ? O5D NDP 302 A 1 HETATM 28 C C5D NDP . . . D 3 -0.24 5.856 22.724 1 39.06 ? C5D NDP 302 A 1 HETATM 29 C C4D NDP . . . D 3 0.45 5.063 23.92 1 46.6 ? C4D NDP 302 A 1 HETATM 30 O O4D NDP . . . D 3 1.843 4.604 23.67 1 51.55 ? O4D NDP 302 A 1 HETATM 31 C C3D NDP . . . D 3 0.571 5.952 25.224 1 42.79 ? C3D NDP 302 A 1 HETATM 32 O O3D NDP . . . D 3 0.064 5.199 26.285 1 41.45 ? O3D NDP 302 A 1 HETATM 33 C C2D NDP . . . D 3 2.116 6.122 25.32 1 38.85 ? C2D NDP 302 A 1 HETATM 34 O O2D NDP . . . D 3 2.625 6.341 26.586 1 45.39 ? O2D NDP 302 A 1 HETATM 35 C C1D NDP . . . D 3 2.51 4.728 24.923 1 36.95 ? C1D NDP 302 A 1 HETATM 36 N N1N NDP . . . D 3 3.902 4.704 24.718 1 36.95 ? N1N NDP 302 A 1 HETATM 37 C C2N NDP . . . D 3 4.653 3.743 25.299 1 37.48 ? C2N NDP 302 A 1 HETATM 38 C C3N NDP . . . D 3 5.875 3.451 24.78 1 35.54 ? C3N NDP 302 A 1 HETATM 39 C C7N NDP . . . D 3 6.602 2.411 25.429 1 32.25 ? C7N NDP 302 A 1 HETATM 40 O O7N NDP . . . D 3 7.765 2.149 25.194 1 31.39 ? O7N NDP 302 A 1 HETATM 41 N N7N NDP . . . D 3 5.922 1.636 26.355 1 32.47 ? N7N NDP 302 A 1 HETATM 42 C C4N NDP . . . D 3 6.424 4.151 23.599 1 33.6 ? C4N NDP 302 A 1 HETATM 43 C C5N NDP . . . D 3 5.7 5.406 23.353 1 35.86 ? C5N NDP 302 A 1 HETATM 44 C C6N NDP . . . D 3 4.506 5.652 23.9 1 41.38 ? C6N NDP 302 A 1 HETATM 45 P P2B NDP . . . D 3 -4.183 12.94 14.819 1 43.33 ? P2B NDP 302 A 1 HETATM 46 O O1X NDP . . . D 3 -5.069 11.959 15.513 1 37.94 ? O1X NDP 302 A 1 HETATM 47 O O2X NDP . . . D 3 -4.181 12.96 13.294 1 40.65 -1 O2X NDP 302 A 1 HETATM 48 O O3X NDP . . . D 3 -3.858 14.221 15.531 1 30.73 -1 O3X NDP 302 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 48 #