data_8CQI
#
_model_server_result.job_id            qyqaYJImURLBfVvBiUDpVw 
_model_server_result.datetime_utc      '2024-10-15 03:25:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cqi 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":601}' 
#
_entry.id    8CQI 
#
_exptl.entry_id    8CQI 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              221.208 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-acetamido-2-deoxy-beta-D-glucopyranose 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.27 
_cell.angle_gamma         90 
_cell.entry_id            8CQI 
_cell.length_a            46.769 
_cell.length_b            71.519 
_cell.length_c            79.32 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CQI 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 283 A CYS 437 1_555 A SG CYS 388 A CYS 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? 
covale ? covale1 A ND2 ASN 8 A ASN 162 1_555 F C1 NAG . A NAG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? 
covale ? covale2 A ND2 ASN 46 A ASN 200 1_555 C C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? 
covale ? covale3 A ND2 ASN 63 A ASN 217 1_555 D C1 NAG . A NAG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? 
covale ? covale4 A ND2 ASN 84 A ASN 238 1_555 E C1 NAG . A NAG 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.461 ? 
#
_chem_comp.formula           'C8 H15 N O6' 
_chem_comp.formula_weight    221.208 
_chem_comp.id                NAG 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-acetamido-2-deoxy-beta-D-glucopyranose 
_chem_comp.type              'd-saccharide, beta linking' 
_chem_comp.pdbx_synonyms     N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 NAG sing 265 n n 
C1 O1 NAG sing 266 n n 
C1 O5 NAG sing 267 n n 
C1 H1 NAG sing 268 n n 
C2 C3 NAG sing 269 n n 
C2 N2 NAG sing 270 n n 
C2 H2 NAG sing 271 n n 
C3 C4 NAG sing 272 n n 
C3 O3 NAG sing 273 n n 
C3 H3 NAG sing 274 n n 
C4 C5 NAG sing 275 n n 
C4 O4 NAG sing 276 n n 
C4 H4 NAG sing 277 n n 
C5 C6 NAG sing 278 n n 
C5 O5 NAG sing 279 n n 
C5 H5 NAG sing 280 n n 
C6 O6 NAG sing 281 n n 
C6 H61 NAG sing 282 n n 
C6 H62 NAG sing 283 n n 
C7 C8 NAG sing 284 n n 
C7 N2 NAG sing 285 n n 
C7 O7 NAG doub 286 n n 
C8 H81 NAG sing 287 n n 
C8 H82 NAG sing 288 n n 
C8 H83 NAG sing 289 n n 
N2 HN2 NAG sing 290 n n 
O1 HO1 NAG sing 291 n n 
O3 HO3 NAG sing 292 n n 
O4 HO4 NAG sing 293 n n 
O6 HO6 NAG sing 294 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 
NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     8CQI 
_atom_sites.fract_transf_matrix[1][1]    0.021382 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001971 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013982 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012661 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAG A 1 601 602 NAG NAG . 
D 3 NAG A 1 602 603 NAG NAG . 
E 3 NAG A 1 603 604 NAG NAG . 
F 3 NAG A 1 604 606 NAG NAG . 
G 4 VGO A 1 605 607 VGO DRG . 
H 5 EDO A 1 606 608 EDO EDO . 
I 6 LYY A 1 607 610 LYY FUC . 
J 5 EDO A 1 608 611 EDO EDO . 
K 3 NAG A 1 609 612 NAG NAG . 
L 7 CL A 1 610 1 CL CL . 
M 7 CL A 1 611 2 CL CL . 
N 7 CL A 1 612 3 CL CL . 
O 8 HOH A 1 701 61 HOH HOH . 
O 8 HOH A 2 702 118 HOH HOH . 
O 8 HOH A 3 703 109 HOH HOH . 
O 8 HOH A 4 704 143 HOH HOH . 
O 8 HOH A 5 705 115 HOH HOH . 
O 8 HOH A 6 706 83 HOH HOH . 
O 8 HOH A 7 707 40 HOH HOH . 
O 8 HOH A 8 708 33 HOH HOH . 
O 8 HOH A 9 709 55 HOH HOH . 
O 8 HOH A 10 710 77 HOH HOH . 
O 8 HOH A 11 711 47 HOH HOH . 
O 8 HOH A 12 712 36 HOH HOH . 
O 8 HOH A 13 713 125 HOH HOH . 
O 8 HOH A 14 714 117 HOH HOH . 
O 8 HOH A 15 715 129 HOH HOH . 
O 8 HOH A 16 716 124 HOH HOH . 
O 8 HOH A 17 717 30 HOH HOH . 
O 8 HOH A 18 718 126 HOH HOH . 
O 8 HOH A 19 719 4 HOH HOH . 
O 8 HOH A 20 720 51 HOH HOH . 
O 8 HOH A 21 721 24 HOH HOH . 
O 8 HOH A 22 722 133 HOH HOH . 
O 8 HOH A 23 723 71 HOH HOH . 
O 8 HOH A 24 724 112 HOH HOH . 
O 8 HOH A 25 725 99 HOH HOH . 
O 8 HOH A 26 726 157 HOH HOH . 
O 8 HOH A 27 727 123 HOH HOH . 
O 8 HOH A 28 728 135 HOH HOH . 
O 8 HOH A 29 729 68 HOH HOH . 
O 8 HOH A 30 730 103 HOH HOH . 
O 8 HOH A 31 731 156 HOH HOH . 
O 8 HOH A 32 732 8 HOH HOH . 
O 8 HOH A 33 733 134 HOH HOH . 
O 8 HOH A 34 734 98 HOH HOH . 
O 8 HOH A 35 735 95 HOH HOH . 
O 8 HOH A 36 736 101 HOH HOH . 
O 8 HOH A 37 737 113 HOH HOH . 
O 8 HOH A 38 738 60 HOH HOH . 
O 8 HOH A 39 739 44 HOH HOH . 
O 8 HOH A 40 740 130 HOH HOH . 
O 8 HOH A 41 741 137 HOH HOH . 
O 8 HOH A 42 742 73 HOH HOH . 
O 8 HOH A 43 743 88 HOH HOH . 
O 8 HOH A 44 744 119 HOH HOH . 
O 8 HOH A 45 745 45 HOH HOH . 
O 8 HOH A 46 746 58 HOH HOH . 
O 8 HOH A 47 747 146 HOH HOH . 
O 8 HOH A 48 748 111 HOH HOH . 
O 8 HOH A 49 749 1 HOH HOH . 
O 8 HOH A 50 750 27 HOH HOH . 
O 8 HOH A 51 751 59 HOH HOH . 
O 8 HOH A 52 752 62 HOH HOH . 
O 8 HOH A 53 753 54 HOH HOH . 
O 8 HOH A 54 754 53 HOH HOH . 
O 8 HOH A 55 755 63 HOH HOH . 
O 8 HOH A 56 756 105 HOH HOH . 
O 8 HOH A 57 757 75 HOH HOH . 
O 8 HOH A 58 758 34 HOH HOH . 
O 8 HOH A 59 759 94 HOH HOH . 
O 8 HOH A 60 760 18 HOH HOH . 
O 8 HOH A 61 761 154 HOH HOH . 
O 8 HOH A 62 762 78 HOH HOH . 
O 8 HOH A 63 763 96 HOH HOH . 
O 8 HOH A 64 764 93 HOH HOH . 
O 8 HOH A 65 765 43 HOH HOH . 
O 8 HOH A 66 766 72 HOH HOH . 
O 8 HOH A 67 767 17 HOH HOH . 
O 8 HOH A 68 768 35 HOH HOH . 
O 8 HOH A 69 769 49 HOH HOH . 
O 8 HOH A 70 770 76 HOH HOH . 
O 8 HOH A 71 771 155 HOH HOH . 
O 8 HOH A 72 772 102 HOH HOH . 
O 8 HOH A 73 773 50 HOH HOH . 
O 8 HOH A 74 774 52 HOH HOH . 
O 8 HOH A 75 775 7 HOH HOH . 
O 8 HOH A 76 776 28 HOH HOH . 
O 8 HOH A 77 777 38 HOH HOH . 
O 8 HOH A 78 778 21 HOH HOH . 
O 8 HOH A 79 779 26 HOH HOH . 
O 8 HOH A 80 780 69 HOH HOH . 
O 8 HOH A 81 781 153 HOH HOH . 
O 8 HOH A 82 782 20 HOH HOH . 
O 8 HOH A 83 783 32 HOH HOH . 
O 8 HOH A 84 784 65 HOH HOH . 
O 8 HOH A 85 785 11 HOH HOH . 
O 8 HOH A 86 786 41 HOH HOH . 
O 8 HOH A 87 787 56 HOH HOH . 
O 8 HOH A 88 788 132 HOH HOH . 
O 8 HOH A 89 789 74 HOH HOH . 
O 8 HOH A 90 790 121 HOH HOH . 
O 8 HOH A 91 791 104 HOH HOH . 
O 8 HOH A 92 792 5 HOH HOH . 
O 8 HOH A 93 793 42 HOH HOH . 
O 8 HOH A 94 794 142 HOH HOH . 
O 8 HOH A 95 795 2 HOH HOH . 
O 8 HOH A 96 796 6 HOH HOH . 
O 8 HOH A 97 797 10 HOH HOH . 
O 8 HOH A 98 798 23 HOH HOH . 
O 8 HOH A 99 799 25 HOH HOH . 
O 8 HOH A 100 800 92 HOH HOH . 
O 8 HOH A 101 801 80 HOH HOH . 
O 8 HOH A 102 802 22 HOH HOH . 
O 8 HOH A 103 803 3 HOH HOH . 
O 8 HOH A 104 804 90 HOH HOH . 
O 8 HOH A 105 805 89 HOH HOH . 
O 8 HOH A 106 806 127 HOH HOH . 
O 8 HOH A 107 807 29 HOH HOH . 
O 8 HOH A 108 808 82 HOH HOH . 
O 8 HOH A 109 809 139 HOH HOH . 
O 8 HOH A 110 810 48 HOH HOH . 
O 8 HOH A 111 811 31 HOH HOH . 
O 8 HOH A 112 812 159 HOH HOH . 
O 8 HOH A 113 813 91 HOH HOH . 
O 8 HOH A 114 814 158 HOH HOH . 
O 8 HOH A 115 815 16 HOH HOH . 
O 8 HOH A 116 816 37 HOH HOH . 
O 8 HOH A 117 817 86 HOH HOH . 
O 8 HOH A 118 818 122 HOH HOH . 
P 8 HOH B 1 101 106 HOH HOH . 
P 8 HOH B 2 102 12 HOH HOH . 
P 8 HOH B 3 103 14 HOH HOH . 
P 8 HOH B 4 104 107 HOH HOH . 
P 8 HOH B 5 105 46 HOH HOH . 
P 8 HOH B 6 106 79 HOH HOH . 
P 8 HOH B 7 107 64 HOH HOH . 
P 8 HOH B 8 108 9 HOH HOH . 
P 8 HOH B 9 109 57 HOH HOH . 
P 8 HOH B 10 110 144 HOH HOH . 
P 8 HOH B 11 111 87 HOH HOH . 
P 8 HOH B 12 112 147 HOH HOH . 
P 8 HOH B 13 113 145 HOH HOH . 
P 8 HOH B 14 114 110 HOH HOH . 
P 8 HOH B 15 115 19 HOH HOH . 
P 8 HOH B 16 116 70 HOH HOH . 
P 8 HOH B 17 117 141 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 NAG . . . C 3 -21.65 8.075 33.705 1 83.61 ? C1 NAG 601 A 1 
HETATM 2 C C2 NAG . . . C 3 -22.52 7.505 32.561 1 86.64 ? C2 NAG 601 A 1 
HETATM 3 C C3 NAG . . . C 3 -22.319 8.254 31.234 1 86.36 ? C3 NAG 601 A 1 
HETATM 4 C C4 NAG . . . C 3 -22.231 9.765 31.431 1 85.64 ? C4 NAG 601 A 1 
HETATM 5 C C5 NAG . . . C 3 -21.141 10.041 32.458 1 82.11 ? C5 NAG 601 A 1 
HETATM 6 C C6 NAG . . . C 3 -20.814 11.508 32.666 0.5 78.46 ? C6 NAG 601 A 1 
HETATM 7 C C7 NAG . . . C 3 -23.014 5.074 32.788 1 71.56 ? C7 NAG 601 A 1 
HETATM 8 C C8 NAG . . . C 3 -22.375 3.715 32.748 1 62.99 ? C8 NAG 601 A 1 
HETATM 9 N N2 NAG . . . C 3 -22.275 6.089 32.313 1 78.58 ? N2 NAG 601 A 1 
HETATM 10 O O3 NAG . . . C 3 -23.359 7.93 30.315 1 79.93 ? O3 NAG 601 A 1 
HETATM 11 O O4 NAG . . . C 3 -21.927 10.41 30.192 1 87.67 ? O4 NAG 601 A 1 
HETATM 12 O O5 NAG . . . C 3 -21.613 9.497 33.706 1 81.43 ? O5 NAG 601 A 1 
HETATM 13 O O6 NAG . . . C 3 -21.916 12.257 33.172 1 76.31 ? O6 NAG 601 A 1 
HETATM 14 O O7 NAG . . . C 3 -24.151 5.243 33.229 1 71.7 ? O7 NAG 601 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           332 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#