data_8CQS # _model_server_result.job_id fKLH1z6y3OZlFRFBTjWCoA _model_server_result.datetime_utc '2024-10-10 02:33:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cqs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8CQS # _exptl.entry_id 8CQS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.739 _cell.angle_gamma 90 _cell.entry_id 8CQS _cell.length_a 80.03 _cell.length_b 44.41 _cell.length_c 103.04 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CQS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 8CQS _atom_sites.fract_transf_matrix[1][1] 0.012495 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004731 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022517 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010377 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 301 1 FMN FMN . D 3 PO4 A 1 302 2 PO4 PO4 . E 2 FMN B 1 301 2 FMN FMN . F 3 PO4 B 1 302 1 PO4 PO4 . G 4 HOH A 1 401 106 HOH HOH . G 4 HOH A 2 402 187 HOH HOH . G 4 HOH A 3 403 100 HOH HOH . G 4 HOH A 4 404 292 HOH HOH . G 4 HOH A 5 405 46 HOH HOH . G 4 HOH A 6 406 142 HOH HOH . G 4 HOH A 7 407 152 HOH HOH . G 4 HOH A 8 408 138 HOH HOH . G 4 HOH A 9 409 103 HOH HOH . G 4 HOH A 10 410 127 HOH HOH . G 4 HOH A 11 411 90 HOH HOH . G 4 HOH A 12 412 10 HOH HOH . G 4 HOH A 13 413 83 HOH HOH . G 4 HOH A 14 414 64 HOH HOH . G 4 HOH A 15 415 123 HOH HOH . G 4 HOH A 16 416 97 HOH HOH . G 4 HOH A 17 417 38 HOH HOH . G 4 HOH A 18 418 48 HOH HOH . G 4 HOH A 19 419 34 HOH HOH . G 4 HOH A 20 420 1 HOH HOH . G 4 HOH A 21 421 15 HOH HOH . G 4 HOH A 22 422 298 HOH HOH . G 4 HOH A 23 423 3 HOH HOH . G 4 HOH A 24 424 18 HOH HOH . G 4 HOH A 25 425 128 HOH HOH . G 4 HOH A 26 426 77 HOH HOH . G 4 HOH A 27 427 9 HOH HOH . G 4 HOH A 28 428 66 HOH HOH . G 4 HOH A 29 429 20 HOH HOH . G 4 HOH A 30 430 54 HOH HOH . G 4 HOH A 31 431 215 HOH HOH . G 4 HOH A 32 432 52 HOH HOH . G 4 HOH A 33 433 16 HOH HOH . G 4 HOH A 34 434 74 HOH HOH . G 4 HOH A 35 435 49 HOH HOH . G 4 HOH A 36 436 42 HOH HOH . G 4 HOH A 37 437 36 HOH HOH . G 4 HOH A 38 438 65 HOH HOH . G 4 HOH A 39 439 294 HOH HOH . G 4 HOH A 40 440 81 HOH HOH . G 4 HOH A 41 441 190 HOH HOH . G 4 HOH A 42 442 136 HOH HOH . G 4 HOH A 43 443 98 HOH HOH . G 4 HOH A 44 444 26 HOH HOH . G 4 HOH A 45 445 118 HOH HOH . G 4 HOH A 46 446 131 HOH HOH . G 4 HOH A 47 447 125 HOH HOH . G 4 HOH A 48 448 28 HOH HOH . G 4 HOH A 49 449 70 HOH HOH . G 4 HOH A 50 450 78 HOH HOH . G 4 HOH A 51 451 295 HOH HOH . G 4 HOH A 52 452 37 HOH HOH . G 4 HOH A 53 453 115 HOH HOH . G 4 HOH A 54 454 51 HOH HOH . G 4 HOH A 55 455 96 HOH HOH . G 4 HOH A 56 456 23 HOH HOH . G 4 HOH A 57 457 266 HOH HOH . G 4 HOH A 58 458 62 HOH HOH . G 4 HOH A 59 459 110 HOH HOH . G 4 HOH A 60 460 278 HOH HOH . G 4 HOH A 61 461 88 HOH HOH . G 4 HOH A 62 462 91 HOH HOH . G 4 HOH A 63 463 63 HOH HOH . G 4 HOH A 64 464 117 HOH HOH . G 4 HOH A 65 465 19 HOH HOH . G 4 HOH A 66 466 170 HOH HOH . G 4 HOH A 67 467 95 HOH HOH . G 4 HOH A 68 468 291 HOH HOH . G 4 HOH A 69 469 29 HOH HOH . G 4 HOH A 70 470 17 HOH HOH . G 4 HOH A 71 471 76 HOH HOH . G 4 HOH A 72 472 89 HOH HOH . G 4 HOH A 73 473 297 HOH HOH . G 4 HOH A 74 474 180 HOH HOH . G 4 HOH A 75 475 222 HOH HOH . G 4 HOH A 76 476 166 HOH HOH . G 4 HOH A 77 477 280 HOH HOH . G 4 HOH A 78 478 197 HOH HOH . G 4 HOH A 79 479 246 HOH HOH . G 4 HOH A 80 480 135 HOH HOH . G 4 HOH A 81 481 282 HOH HOH . G 4 HOH A 82 482 267 HOH HOH . G 4 HOH A 83 483 129 HOH HOH . G 4 HOH A 84 484 287 HOH HOH . G 4 HOH A 85 485 155 HOH HOH . G 4 HOH A 86 486 276 HOH HOH . H 4 HOH B 1 401 50 HOH HOH . H 4 HOH B 2 402 8 HOH HOH . H 4 HOH B 3 403 45 HOH HOH . H 4 HOH B 4 404 59 HOH HOH . H 4 HOH B 5 405 56 HOH HOH . H 4 HOH B 6 406 122 HOH HOH . H 4 HOH B 7 407 195 HOH HOH . H 4 HOH B 8 408 13 HOH HOH . H 4 HOH B 9 409 47 HOH HOH . H 4 HOH B 10 410 150 HOH HOH . H 4 HOH B 11 411 92 HOH HOH . H 4 HOH B 12 412 35 HOH HOH . H 4 HOH B 13 413 4 HOH HOH . H 4 HOH B 14 414 60 HOH HOH . H 4 HOH B 15 415 293 HOH HOH . H 4 HOH B 16 416 141 HOH HOH . H 4 HOH B 17 417 72 HOH HOH . H 4 HOH B 18 418 61 HOH HOH . H 4 HOH B 19 419 53 HOH HOH . H 4 HOH B 20 420 44 HOH HOH . H 4 HOH B 21 421 57 HOH HOH . H 4 HOH B 22 422 5 HOH HOH . H 4 HOH B 23 423 82 HOH HOH . H 4 HOH B 24 424 156 HOH HOH . H 4 HOH B 25 425 7 HOH HOH . H 4 HOH B 26 426 22 HOH HOH . H 4 HOH B 27 427 32 HOH HOH . H 4 HOH B 28 428 79 HOH HOH . H 4 HOH B 29 429 67 HOH HOH . H 4 HOH B 30 430 43 HOH HOH . H 4 HOH B 31 431 31 HOH HOH . H 4 HOH B 32 432 85 HOH HOH . H 4 HOH B 33 433 71 HOH HOH . H 4 HOH B 34 434 14 HOH HOH . H 4 HOH B 35 435 126 HOH HOH . H 4 HOH B 36 436 271 HOH HOH . H 4 HOH B 37 437 133 HOH HOH . H 4 HOH B 38 438 25 HOH HOH . H 4 HOH B 39 439 139 HOH HOH . H 4 HOH B 40 440 153 HOH HOH . H 4 HOH B 41 441 147 HOH HOH . H 4 HOH B 42 442 290 HOH HOH . H 4 HOH B 43 443 137 HOH HOH . H 4 HOH B 44 444 185 HOH HOH . H 4 HOH B 45 445 69 HOH HOH . H 4 HOH B 46 446 121 HOH HOH . H 4 HOH B 47 447 24 HOH HOH . H 4 HOH B 48 448 30 HOH HOH . H 4 HOH B 49 449 162 HOH HOH . H 4 HOH B 50 450 41 HOH HOH . H 4 HOH B 51 451 40 HOH HOH . H 4 HOH B 52 452 289 HOH HOH . H 4 HOH B 53 453 94 HOH HOH . H 4 HOH B 54 454 80 HOH HOH . H 4 HOH B 55 455 102 HOH HOH . H 4 HOH B 56 456 99 HOH HOH . H 4 HOH B 57 457 39 HOH HOH . H 4 HOH B 58 458 84 HOH HOH . H 4 HOH B 59 459 265 HOH HOH . H 4 HOH B 60 460 161 HOH HOH . H 4 HOH B 61 461 75 HOH HOH . H 4 HOH B 62 462 104 HOH HOH . H 4 HOH B 63 463 55 HOH HOH . H 4 HOH B 64 464 140 HOH HOH . H 4 HOH B 65 465 264 HOH HOH . H 4 HOH B 66 466 87 HOH HOH . H 4 HOH B 67 467 58 HOH HOH . H 4 HOH B 68 468 27 HOH HOH . H 4 HOH B 69 469 2 HOH HOH . H 4 HOH B 70 470 12 HOH HOH . H 4 HOH B 71 471 143 HOH HOH . H 4 HOH B 72 472 237 HOH HOH . H 4 HOH B 73 473 279 HOH HOH . H 4 HOH B 74 474 213 HOH HOH . H 4 HOH B 75 475 269 HOH HOH . H 4 HOH B 76 476 268 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 2 -12.64 -7.47 24.806 1 15.83 0 N1 FMN 301 A 1 HETATM 2 C C2 FMN . . . C 2 -11.394 -7.55 24.312 1 16.77 0 C2 FMN 301 A 1 HETATM 3 O O2 FMN . . . C 2 -10.925 -8.652 23.968 1 16.12 0 O2 FMN 301 A 1 HETATM 4 N N3 FMN . . . C 2 -10.659 -6.407 24.037 1 17.6 0 N3 FMN 301 A 1 HETATM 5 C C4 FMN . . . C 2 -11.084 -5.173 24.411 1 15.83 0 C4 FMN 301 A 1 HETATM 6 O O4 FMN . . . C 2 -10.393 -4.2 24.159 1 16.6 0 O4 FMN 301 A 1 HETATM 7 C C4A FMN . . . C 2 -12.348 -5.064 25.049 1 14.61 0 C4A FMN 301 A 1 HETATM 8 N N5 FMN . . . C 2 -12.765 -3.845 25.365 1 16.44 0 N5 FMN 301 A 1 HETATM 9 C C5A FMN . . . C 2 -14.049 -3.776 25.84 1 16.71 0 C5A FMN 301 A 1 HETATM 10 C C6 FMN . . . C 2 -14.583 -2.498 26.138 1 18.99 0 C6 FMN 301 A 1 HETATM 11 C C7 FMN . . . C 2 -15.878 -2.35 26.517 1 16.57 0 C7 FMN 301 A 1 HETATM 12 C C7M FMN . . . C 2 -16.424 -0.96 26.793 1 19.5 0 C7M FMN 301 A 1 HETATM 13 C C8 FMN . . . C 2 -16.695 -3.481 26.647 1 16.23 0 C8 FMN 301 A 1 HETATM 14 C C8M FMN . . . C 2 -18.135 -3.34 27.049 1 19.11 0 C8M FMN 301 A 1 HETATM 15 C C9 FMN . . . C 2 -16.198 -4.716 26.384 1 15.11 0 C9 FMN 301 A 1 HETATM 16 C C9A FMN . . . C 2 -14.869 -4.901 25.978 1 12.8 0 C9A FMN 301 A 1 HETATM 17 N N10 FMN . . . C 2 -14.328 -6.161 25.744 1 13.49 0 N10 FMN 301 A 1 HETATM 18 C C10 FMN . . . C 2 -13.107 -6.277 25.177 1 14.26 0 C10 FMN 301 A 1 HETATM 19 C C1' FMN . . . C 2 -15.214 -7.328 25.87 1 13.9 0 C1' FMN 301 A 1 HETATM 20 C C2' FMN . . . C 2 -15.378 -7.763 27.343 1 14.82 0 C2' FMN 301 A 1 HETATM 21 O O2' FMN . . . C 2 -14.17 -8.437 27.803 1 16.8 0 O2' FMN 301 A 1 HETATM 22 C C3' FMN . . . C 2 -16.537 -8.734 27.481 1 13.98 0 C3' FMN 301 A 1 HETATM 23 O O3' FMN . . . C 2 -17.756 -8.059 27.203 1 15.88 0 O3' FMN 301 A 1 HETATM 24 C C4' FMN . . . C 2 -16.636 -9.355 28.886 1 14.61 0 C4' FMN 301 A 1 HETATM 25 O O4' FMN . . . C 2 -15.483 -10.206 29.092 1 16.08 0 O4' FMN 301 A 1 HETATM 26 C C5' FMN . . . C 2 -17.912 -10.136 29.133 1 16.78 0 C5' FMN 301 A 1 HETATM 27 O O5' FMN . . . C 2 -18.088 -11.162 28.089 1 15.34 0 O5' FMN 301 A 1 HETATM 28 P P FMN . . . C 2 -19.463 -11.214 27.331 1 16 0 P FMN 301 A 1 HETATM 29 O O1P FMN . . . C 2 -20.669 -11.089 28.25 1 16.88 0 O1P FMN 301 A 1 HETATM 30 O O2P FMN . . . C 2 -19.412 -10.018 26.384 1 16.85 0 O2P FMN 301 A 1 HETATM 31 O O3P FMN . . . C 2 -19.447 -12.504 26.593 1 16.01 0 O3P FMN 301 A 1 HETATM 32 H HN3 FMN . . . C 2 -9.813 -6.526 23.849 1 16.81 0 HN3 FMN 301 A 1 HETATM 33 H H6 FMN . . . C 2 -14.072 -1.726 25.906 1 17.5 0 H6 FMN 301 A 1 HETATM 34 H HM71 FMN . . . C 2 -17.184 -0.788 26.214 1 18.55 0 HM71 FMN 301 A 1 HETATM 35 H HM72 FMN . . . C 2 -15.734 -0.298 26.623 1 18.55 0 HM72 FMN 301 A 1 HETATM 36 H HM73 FMN . . . C 2 -16.705 -0.9 27.72 1 18.55 0 HM73 FMN 301 A 1 HETATM 37 H HM81 FMN . . . C 2 -18.185 -3.02 27.963 1 18.13 0 HM81 FMN 301 A 1 HETATM 38 H HM82 FMN . . . C 2 -18.579 -4.201 26.985 1 18.15 0 HM82 FMN 301 A 1 HETATM 39 H HM83 FMN . . . C 2 -18.576 -2.706 26.461 1 18.17 0 HM83 FMN 301 A 1 HETATM 40 H H9 FMN . . . C 2 -16.748 -5.478 26.554 1 15.03 0 H9 FMN 301 A 1 HETATM 41 H "H1'1" FMN . . . C 2 -14.843 -8.07 25.356 1 14.02 0 "H1'1" FMN 301 A 1 HETATM 42 H "H1'2" FMN . . . C 2 -16.088 -7.113 25.49 1 14.02 0 "H1'2" FMN 301 A 1 HETATM 43 H H2' FMN . . . C 2 -15.543 -6.968 27.91 1 14.82 0 H2' FMN 301 A 1 HETATM 44 H HO2' FMN . . . C 2 -14.369 -9.21 28.059 0 18.08 0 HO2' FMN 301 A 1 HETATM 45 H H3' FMN . . . C 2 -16.424 -9.464 26.819 1 14.61 0 H3' FMN 301 A 1 HETATM 46 H HO3' FMN . . . C 2 -18.276 -8.133 27.86 0 17.37 0 HO3' FMN 301 A 1 HETATM 47 H H4' FMN . . . C 2 -16.594 -8.613 29.558 1 15.14 0 H4' FMN 301 A 1 HETATM 48 H HO4' FMN . . . C 2 -15.721 -10.985 29.313 0 17.65 0 HO4' FMN 301 A 1 HETATM 49 H "H5'1" FMN . . . C 2 -18.678 -9.525 29.131 1 15.91 0 "H5'1" FMN 301 A 1 HETATM 50 H "H5'2" FMN . . . C 2 -17.867 -10.57 30.01 1 15.9 0 "H5'2" FMN 301 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 50 #