data_8CQT # _model_server_result.job_id kygVy4cTTgRSyLStHUmB9A _model_server_result.datetime_utc '2024-11-14 05:38:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cqt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8CQT # _exptl.entry_id 8CQT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CQT _cell.length_a 56.626 _cell.length_b 65.333 _cell.length_c 90.543 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CQT _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 8CQT _atom_sites.fract_transf_matrix[1][1] 0.01766 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015306 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011044 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 201 2 FMN FMN . D 3 CL A 1 202 1 CL CL . E 2 FMN B 1 201 1 FMN FMN . F 3 CL B 1 202 2 CL CL . G 4 HOH A 1 301 17 HOH HOH . G 4 HOH A 2 302 209 HOH HOH . G 4 HOH A 3 303 25 HOH HOH . G 4 HOH A 4 304 212 HOH HOH . G 4 HOH A 5 305 79 HOH HOH . G 4 HOH A 6 306 128 HOH HOH . G 4 HOH A 7 307 55 HOH HOH . G 4 HOH A 8 308 1 HOH HOH . G 4 HOH A 9 309 93 HOH HOH . G 4 HOH A 10 310 52 HOH HOH . G 4 HOH A 11 311 179 HOH HOH . G 4 HOH A 12 312 11 HOH HOH . G 4 HOH A 13 313 49 HOH HOH . G 4 HOH A 14 314 66 HOH HOH . G 4 HOH A 15 315 86 HOH HOH . G 4 HOH A 16 316 218 HOH HOH . G 4 HOH A 17 317 124 HOH HOH . G 4 HOH A 18 318 46 HOH HOH . G 4 HOH A 19 319 87 HOH HOH . G 4 HOH A 20 320 57 HOH HOH . G 4 HOH A 21 321 69 HOH HOH . G 4 HOH A 22 322 81 HOH HOH . G 4 HOH A 23 323 76 HOH HOH . G 4 HOH A 24 324 211 HOH HOH . G 4 HOH A 25 325 75 HOH HOH . G 4 HOH A 26 326 28 HOH HOH . G 4 HOH A 27 327 72 HOH HOH . G 4 HOH A 28 328 37 HOH HOH . G 4 HOH A 29 329 15 HOH HOH . G 4 HOH A 30 330 113 HOH HOH . G 4 HOH A 31 331 208 HOH HOH . G 4 HOH A 32 332 120 HOH HOH . G 4 HOH A 33 333 131 HOH HOH . G 4 HOH A 34 334 22 HOH HOH . G 4 HOH A 35 335 92 HOH HOH . G 4 HOH A 36 336 50 HOH HOH . G 4 HOH A 37 337 210 HOH HOH . G 4 HOH A 38 338 47 HOH HOH . G 4 HOH A 39 339 71 HOH HOH . G 4 HOH A 40 340 3 HOH HOH . G 4 HOH A 41 341 7 HOH HOH . G 4 HOH A 42 342 90 HOH HOH . G 4 HOH A 43 343 84 HOH HOH . G 4 HOH A 44 344 27 HOH HOH . G 4 HOH A 45 345 58 HOH HOH . G 4 HOH A 46 346 176 HOH HOH . G 4 HOH A 47 347 9 HOH HOH . G 4 HOH A 48 348 126 HOH HOH . G 4 HOH A 49 349 51 HOH HOH . G 4 HOH A 50 350 98 HOH HOH . G 4 HOH A 51 351 151 HOH HOH . G 4 HOH A 52 352 62 HOH HOH . G 4 HOH A 53 353 180 HOH HOH . G 4 HOH A 54 354 144 HOH HOH . G 4 HOH A 55 355 127 HOH HOH . G 4 HOH A 56 356 204 HOH HOH . H 4 HOH B 1 301 207 HOH HOH . H 4 HOH B 2 302 214 HOH HOH . H 4 HOH B 3 303 29 HOH HOH . H 4 HOH B 4 304 88 HOH HOH . H 4 HOH B 5 305 39 HOH HOH . H 4 HOH B 6 306 44 HOH HOH . H 4 HOH B 7 307 205 HOH HOH . H 4 HOH B 8 308 100 HOH HOH . H 4 HOH B 9 309 60 HOH HOH . H 4 HOH B 10 310 221 HOH HOH . H 4 HOH B 11 311 33 HOH HOH . H 4 HOH B 12 312 206 HOH HOH . H 4 HOH B 13 313 215 HOH HOH . H 4 HOH B 14 314 13 HOH HOH . H 4 HOH B 15 315 43 HOH HOH . H 4 HOH B 16 316 2 HOH HOH . H 4 HOH B 17 317 18 HOH HOH . H 4 HOH B 18 318 5 HOH HOH . H 4 HOH B 19 319 4 HOH HOH . H 4 HOH B 20 320 16 HOH HOH . H 4 HOH B 21 321 153 HOH HOH . H 4 HOH B 22 322 8 HOH HOH . H 4 HOH B 23 323 36 HOH HOH . H 4 HOH B 24 324 21 HOH HOH . H 4 HOH B 25 325 80 HOH HOH . H 4 HOH B 26 326 216 HOH HOH . H 4 HOH B 27 327 125 HOH HOH . H 4 HOH B 28 328 220 HOH HOH . H 4 HOH B 29 329 64 HOH HOH . H 4 HOH B 30 330 23 HOH HOH . H 4 HOH B 31 331 53 HOH HOH . H 4 HOH B 32 332 89 HOH HOH . H 4 HOH B 33 333 154 HOH HOH . H 4 HOH B 34 334 19 HOH HOH . H 4 HOH B 35 335 147 HOH HOH . H 4 HOH B 36 336 65 HOH HOH . H 4 HOH B 37 337 38 HOH HOH . H 4 HOH B 38 338 164 HOH HOH . H 4 HOH B 39 339 31 HOH HOH . H 4 HOH B 40 340 40 HOH HOH . H 4 HOH B 41 341 95 HOH HOH . H 4 HOH B 42 342 70 HOH HOH . H 4 HOH B 43 343 213 HOH HOH . H 4 HOH B 44 344 63 HOH HOH . H 4 HOH B 45 345 137 HOH HOH . H 4 HOH B 46 346 26 HOH HOH . H 4 HOH B 47 347 48 HOH HOH . H 4 HOH B 48 348 14 HOH HOH . H 4 HOH B 49 349 217 HOH HOH . H 4 HOH B 50 350 145 HOH HOH . H 4 HOH B 51 351 35 HOH HOH . H 4 HOH B 52 352 219 HOH HOH . H 4 HOH B 53 353 129 HOH HOH . H 4 HOH B 54 354 174 HOH HOH . H 4 HOH B 55 355 182 HOH HOH . H 4 HOH B 56 356 114 HOH HOH . H 4 HOH B 57 357 96 HOH HOH . H 4 HOH B 58 358 61 HOH HOH . H 4 HOH B 59 359 187 HOH HOH . H 4 HOH B 60 360 42 HOH HOH . H 4 HOH B 61 361 192 HOH HOH . H 4 HOH B 62 362 121 HOH HOH . H 4 HOH B 63 363 134 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 2 0.409 7.798 9.616 1 22.17 0 N1 FMN 201 A 1 HETATM 2 C C2 FMN . . . C 2 -0.731 8.476 9.3 1 22.25 0 C2 FMN 201 A 1 HETATM 3 O O2 FMN . . . C 2 -0.722 9.432 8.52 1 22.97 0 O2 FMN 201 A 1 HETATM 4 N N3 FMN . . . C 2 -1.921 8.093 9.896 1 22.07 0 N3 FMN 201 A 1 HETATM 5 C C4 FMN . . . C 2 -2.104 7.058 10.793 1 21.4 0 C4 FMN 201 A 1 HETATM 6 O O4 FMN . . . C 2 -3.22 6.744 11.206 1 19.89 0 O4 FMN 201 A 1 HETATM 7 C C4A FMN . . . C 2 -0.907 6.422 11.157 1 18.14 0 C4A FMN 201 A 1 HETATM 8 N N5 FMN . . . C 2 -0.972 5.443 12.036 1 18.76 0 N5 FMN 201 A 1 HETATM 9 C C5A FMN . . . C 2 0.165 4.701 12.241 1 17.9 0 C5A FMN 201 A 1 HETATM 10 C C6 FMN . . . C 2 0.114 3.621 13.125 1 19.05 0 C6 FMN 201 A 1 HETATM 11 C C7 FMN . . . C 2 1.221 2.896 13.454 1 17.96 0 C7 FMN 201 A 1 HETATM 12 C C7M FMN . . . C 2 1.123 1.726 14.404 1 20.05 0 C7M FMN 201 A 1 HETATM 13 C C8 FMN . . . C 2 2.41 3.184 12.829 1 19.1 0 C8 FMN 201 A 1 HETATM 14 C C8M FMN . . . C 2 3.611 2.346 13.103 1 19.85 0 C8M FMN 201 A 1 HETATM 15 C C9 FMN . . . C 2 2.518 4.242 11.954 1 17.68 0 C9 FMN 201 A 1 HETATM 16 C C9A FMN . . . C 2 1.401 5.054 11.718 1 17.42 0 C9A FMN 201 A 1 HETATM 17 N N10 FMN . . . C 2 1.443 6.102 10.83 1 16.79 0 N10 FMN 201 A 1 HETATM 18 C C10 FMN . . . C 2 0.3 6.813 10.489 1 19.24 0 C10 FMN 201 A 1 HETATM 19 C C1' FMN . . . C 2 2.725 6.414 10.198 1 17.56 0 C1' FMN 201 A 1 HETATM 20 C C2' FMN . . . C 2 3.718 7.052 11.162 1 18.32 0 C2' FMN 201 A 1 HETATM 21 O O2' FMN . . . C 2 3.349 8.431 11.285 1 19.47 0 O2' FMN 201 A 1 HETATM 22 C C3' FMN . . . C 2 5.121 6.993 10.551 1 21.06 0 C3' FMN 201 A 1 HETATM 23 O O3' FMN . . . C 2 5.511 5.631 10.4 1 24.36 0 O3' FMN 201 A 1 HETATM 24 C C4' FMN . . . C 2 6.173 7.805 11.347 1 26.6 0 C4' FMN 201 A 1 HETATM 25 O O4' FMN . . . C 2 5.831 9.209 11.392 1 28.76 0 O4' FMN 201 A 1 HETATM 26 C C5' FMN . . . C 2 7.597 7.665 10.827 1 22.64 0 C5' FMN 201 A 1 HETATM 27 O O5' FMN . . . C 2 7.592 8.127 9.488 1 25.37 0 O5' FMN 201 A 1 HETATM 28 P P FMN . . . C 2 7.96 7.109 8.241 1 25.66 0 P FMN 201 A 1 HETATM 29 O O1P FMN . . . C 2 7.754 8.003 7.077 1 19.13 0 O1P FMN 201 A 1 HETATM 30 O O2P FMN . . . C 2 9.4 6.712 8.351 1 25.27 0 O2P FMN 201 A 1 HETATM 31 O O3P FMN . . . C 2 6.933 5.91 8.382 1 25.33 0 O3P FMN 201 A 1 HETATM 32 H HN3 FMN . . . C 2 -2.632 8.582 9.721 1 21.42 0 HN3 FMN 201 A 1 HETATM 33 H H6 FMN . . . C 2 -0.726 3.379 13.502 1 18.7 0 H6 FMN 201 A 1 HETATM 34 H HM71 FMN . . . C 2 1.388 0.91 13.946 1 19.38 0 HM71 FMN 201 A 1 HETATM 35 H HM72 FMN . . . C 2 0.207 1.635 14.717 1 19.38 0 HM72 FMN 201 A 1 HETATM 36 H HM73 FMN . . . C 2 1.709 1.873 15.166 1 19.38 0 HM73 FMN 201 A 1 HETATM 37 H HM81 FMN . . . C 2 3.731 2.247 14.061 1 19.6 0 HM81 FMN 201 A 1 HETATM 38 H HM82 FMN . . . C 2 4.4 2.769 12.723 1 19.6 0 HM82 FMN 201 A 1 HETATM 39 H HM83 FMN . . . C 2 3.494 1.468 12.702 1 19.61 0 HM83 FMN 201 A 1 HETATM 40 H H9 FMN . . . C 2 3.372 4.475 11.599 1 18.24 0 H9 FMN 201 A 1 HETATM 41 H "H1'1" FMN . . . C 2 2.574 7.022 9.446 1 17.6 0 "H1'1" FMN 201 A 1 HETATM 42 H "H1'2" FMN . . . C 2 3.109 5.594 9.826 1 17.58 0 "H1'2" FMN 201 A 1 HETATM 43 H H2' FMN . . . C 2 3.683 6.586 12.043 1 18.88 0 H2' FMN 201 A 1 HETATM 44 H HO2' FMN . . . C 2 3.992 8.91 10.978 0 20.18 0 HO2' FMN 201 A 1 HETATM 45 H H3' FMN . . . C 2 5.057 7.393 9.643 1 22.05 0 H3' FMN 201 A 1 HETATM 46 H HO3' FMN . . . C 2 6.28 5.508 10.773 0 25.28 0 HO3' FMN 201 A 1 HETATM 47 H H4' FMN . . . C 2 6.172 7.467 12.279 1 25.03 0 H4' FMN 201 A 1 HETATM 48 H HO4' FMN . . . C 2 6.517 9.67 11.122 0 29.73 0 HO4' FMN 201 A 1 HETATM 49 H "H5'1" FMN . . . C 2 7.88 6.729 10.872 1 24.16 0 "H5'1" FMN 201 A 1 HETATM 50 H "H5'2" FMN . . . C 2 8.206 8.205 11.368 1 24.15 0 "H5'2" FMN 201 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 50 #