data_8CR8 # _model_server_result.job_id U_YxOBJ6xW-O5ELTViCA-A _model_server_result.datetime_utc '2025-01-02 20:07:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cr8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 8CR8 # _exptl.entry_id 8CR8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 158.925 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TERBIUM(III) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.06 _cell.angle_gamma 90 _cell.entry_id 8CR8 _cell.length_a 67.748 _cell.length_b 59.842 _cell.length_c 69.989 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CR8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 3 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 3 5 4 MAN MAN C1 O1 . O2 HO2 . sing 5 ? 3 6 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n C NAG 1 C 1 NAG A 401 NAG 3 n C NAG 2 C 2 NAG A 402 NAG 3 n C BMA 3 C 3 BMA A 403 BMA 3 n C MAN 4 C 4 MAN A 406 MAN 3 n C MAN 5 C 5 MAN A 407 MAN 3 n C MAN 6 C 6 MAN A 405 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 47 A CYS 50 1_555 A SG CYS 87 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 A SG CYS 128 A CYS 131 1_555 A SG CYS 139 A CYS 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 167 A CYS 170 1_555 A SG CYS 190 A CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 A SG CYS 196 A CYS 199 1_555 B SG CYS 74 B CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf5 A SG CYS 297 A CYS 300 1_555 A SG CYS 324 A CYS 327 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf6 B SG CYS 78 B CYS 77 1_555 B SG CYS 90 B CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 A ND2 ASN 219 A ASN 222 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale2 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale3 C O4 NAG . C NAG 2 1_555 C C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale4 C O6 BMA . C BMA 3 1_555 C C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale5 C O3 BMA . C BMA 3 1_555 C C1 MAN . C MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 C O2 MAN . C MAN 4 1_555 C C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? metalc ? metalc1 A OE1 GLU 19 A GLU 22 1_555 D TB TB . A TB 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.423 ? metalc ? metalc2 A OE2 GLU 19 A GLU 22 1_555 D TB TB . A TB 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc3 A OE1 GLU 41 A GLU 44 1_555 D TB TB . A TB 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.391 ? metalc ? metalc4 A OE2 GLU 41 A GLU 44 1_555 D TB TB . A TB 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc5 A OE1 GLU 119 A GLU 122 1_555 D TB TB . A TB 401 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? metalc ? metalc6 A OE2 GLU 119 A GLU 122 1_555 D TB TB . A TB 401 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc7 D TB TB . A TB 401 1_555 E O HOH . A HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.402 ? # _chem_comp.formula 'Tb 3' _chem_comp.formula_weight 158.925 _chem_comp.id TB _chem_comp.mon_nstd_flag . _chem_comp.name 'TERBIUM(III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8CR8 _atom_sites.fract_transf_matrix[1][1] 0.014761 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00209 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016711 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014431 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 TB A 1 401 1 TB TB . E 5 HOH A 1 501 62 HOH HOH . E 5 HOH A 2 502 70 HOH HOH . E 5 HOH A 3 503 75 HOH HOH . E 5 HOH A 4 504 54 HOH HOH . E 5 HOH A 5 505 7 HOH HOH . E 5 HOH A 6 506 82 HOH HOH . E 5 HOH A 7 507 12 HOH HOH . E 5 HOH A 8 508 79 HOH HOH . E 5 HOH A 9 509 72 HOH HOH . E 5 HOH A 10 510 42 HOH HOH . E 5 HOH A 11 511 40 HOH HOH . E 5 HOH A 12 512 13 HOH HOH . E 5 HOH A 13 513 57 HOH HOH . E 5 HOH A 14 514 53 HOH HOH . E 5 HOH A 15 515 1 HOH HOH . E 5 HOH A 16 516 65 HOH HOH . E 5 HOH A 17 517 81 HOH HOH . E 5 HOH A 18 518 17 HOH HOH . E 5 HOH A 19 519 11 HOH HOH . E 5 HOH A 20 520 8 HOH HOH . E 5 HOH A 21 521 73 HOH HOH . E 5 HOH A 22 522 36 HOH HOH . E 5 HOH A 23 523 74 HOH HOH . E 5 HOH A 24 524 48 HOH HOH . E 5 HOH A 25 525 52 HOH HOH . E 5 HOH A 26 526 18 HOH HOH . E 5 HOH A 27 527 34 HOH HOH . E 5 HOH A 28 528 63 HOH HOH . E 5 HOH A 29 529 32 HOH HOH . E 5 HOH A 30 530 3 HOH HOH . E 5 HOH A 31 531 5 HOH HOH . E 5 HOH A 32 532 10 HOH HOH . E 5 HOH A 33 533 60 HOH HOH . E 5 HOH A 34 534 2 HOH HOH . E 5 HOH A 35 535 68 HOH HOH . E 5 HOH A 36 536 38 HOH HOH . E 5 HOH A 37 537 78 HOH HOH . E 5 HOH A 38 538 64 HOH HOH . E 5 HOH A 39 539 14 HOH HOH . E 5 HOH A 40 540 20 HOH HOH . E 5 HOH A 41 541 76 HOH HOH . E 5 HOH A 42 542 84 HOH HOH . E 5 HOH A 43 543 4 HOH HOH . E 5 HOH A 44 544 83 HOH HOH . E 5 HOH A 45 545 67 HOH HOH . E 5 HOH A 46 546 77 HOH HOH . E 5 HOH A 47 547 61 HOH HOH . E 5 HOH A 48 548 69 HOH HOH . E 5 HOH A 49 549 21 HOH HOH . E 5 HOH A 50 550 24 HOH HOH . E 5 HOH A 51 551 55 HOH HOH . E 5 HOH A 52 552 43 HOH HOH . E 5 HOH A 53 553 23 HOH HOH . E 5 HOH A 54 554 25 HOH HOH . E 5 HOH A 55 555 9 HOH HOH . E 5 HOH A 56 556 37 HOH HOH . E 5 HOH A 57 557 22 HOH HOH . E 5 HOH A 58 558 41 HOH HOH . E 5 HOH A 59 559 71 HOH HOH . E 5 HOH A 60 560 47 HOH HOH . E 5 HOH A 61 561 16 HOH HOH . E 5 HOH A 62 562 46 HOH HOH . E 5 HOH A 63 563 27 HOH HOH . E 5 HOH A 64 564 80 HOH HOH . E 5 HOH A 65 565 30 HOH HOH . E 5 HOH A 66 566 45 HOH HOH . E 5 HOH A 67 567 44 HOH HOH . E 5 HOH A 68 568 29 HOH HOH . E 5 HOH A 69 569 66 HOH HOH . E 5 HOH A 70 570 26 HOH HOH . E 5 HOH A 71 571 19 HOH HOH . E 5 HOH A 72 572 35 HOH HOH . E 5 HOH A 73 573 28 HOH HOH . F 5 HOH B 1 201 15 HOH HOH . F 5 HOH B 2 202 56 HOH HOH . F 5 HOH B 3 203 39 HOH HOH . F 5 HOH B 4 204 49 HOH HOH . F 5 HOH B 5 205 51 HOH HOH . F 5 HOH B 6 206 6 HOH HOH . F 5 HOH B 7 207 50 HOH HOH . F 5 HOH B 8 208 33 HOH HOH . F 5 HOH B 9 209 58 HOH HOH . F 5 HOH B 10 210 59 HOH HOH . F 5 HOH B 11 211 31 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol TB _atom_site.label_atom_id TB _atom_site.label_comp_id TB _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -8.907 _atom_site.Cartn_y 15.072 _atom_site.Cartn_z -7.168 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 71.95 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id TB _atom_site.auth_comp_id TB _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 37 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #