data_8CRJ
#
_model_server_result.job_id            R5k265oAre7p2oFmimssYw 
_model_server_result.datetime_utc      '2024-11-17 09:32:53' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8crj 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    8CRJ 
#
_exptl.entry_id    8CRJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              535.532 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "5'-O-[(R)-({5-[(3R)-1,2-DITHIOLAN-3-YL]PENTANOYL}OXY)(HYDROXY)PHOSPHORYL]ADENOSINE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8CRJ 
_cell.length_a            79.31 
_cell.length_b            79.31 
_cell.length_c            225.14 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CRJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C18 H26 N5 O8 P S2' 
_chem_comp.formula_weight    535.532 
_chem_comp.id                LAQ 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "5'-O-[(R)-({5-[(3R)-1,2-DITHIOLAN-3-YL]PENTANOYL}OXY)(HYDROXY)PHOSPHORYL]ADENOSINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     LIPOYL-AMP 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2P P LAQ sing 182 n n 
O2P HO2P LAQ sing 183 n n 
P O1P LAQ doub 184 n n 
P O5' LAQ sing 185 n n 
P O3P LAQ sing 186 n n 
O3P C10 LAQ sing 187 n n 
C10 O10 LAQ doub 188 n n 
C10 C11 LAQ sing 189 n n 
C11 C12 LAQ sing 190 n n 
C11 H111 LAQ sing 191 n n 
C11 H112 LAQ sing 192 n n 
C12 C13 LAQ sing 193 n n 
C12 H121 LAQ sing 194 n n 
C12 H122 LAQ sing 195 n n 
C13 C14 LAQ sing 196 n n 
C13 H131 LAQ sing 197 n n 
C13 H132 LAQ sing 198 n n 
C14 C15 LAQ sing 199 n n 
C14 H141 LAQ sing 200 n n 
C14 H142 LAQ sing 201 n n 
C15 C16 LAQ sing 202 n n 
C15 S15 LAQ sing 203 n n 
C15 H15 LAQ sing 204 n n 
S15 S17 LAQ sing 205 n n 
S17 C17 LAQ sing 206 n n 
C17 C16 LAQ sing 207 n n 
C17 H171 LAQ sing 208 n n 
C17 H172 LAQ sing 209 n n 
C16 H161 LAQ sing 210 n n 
C16 H162 LAQ sing 211 n n 
O5' C5' LAQ sing 212 n n 
C5' C4' LAQ sing 213 n n 
C5' "H5'1" LAQ sing 214 n n 
C5' "H5'2" LAQ sing 215 n n 
C4' O4' LAQ sing 216 n n 
C4' C3' LAQ sing 217 n n 
C4' H4' LAQ sing 218 n n 
C3' C2' LAQ sing 219 n n 
C3' O3' LAQ sing 220 n n 
C3' H3' LAQ sing 221 n n 
O3' HO3' LAQ sing 222 n n 
C2' O2' LAQ sing 223 n n 
C2' C1' LAQ sing 224 n n 
C2' H2' LAQ sing 225 n n 
O2' HO2' LAQ sing 226 n n 
C1' O4' LAQ sing 227 n n 
C1' N9 LAQ sing 228 n n 
C1' H1' LAQ sing 229 n n 
N9 C4 LAQ sing 230 n y 
N9 C8 LAQ sing 231 n y 
C8 N7 LAQ doub 232 n y 
C8 H8 LAQ sing 233 n n 
N7 C5 LAQ sing 234 n y 
C5 C4 LAQ doub 235 n y 
C5 C6 LAQ sing 236 n y 
C6 N1 LAQ doub 237 n y 
C6 N6 LAQ sing 238 n n 
N6 HN61 LAQ sing 239 n n 
N6 HN62 LAQ sing 240 n n 
N1 C2 LAQ sing 241 n y 
C2 N3 LAQ doub 242 n y 
C2 H2 LAQ sing 243 n n 
N3 C4 LAQ sing 244 n y 
#
_atom_sites.entry_id                     8CRJ 
_atom_sites.fract_transf_matrix[1][1]    0.012609 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012609 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004442 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 LAQ A 1 401 999 LAQ LAQ . 
C 3 MG A 1 402 1 MG MG . 
D 4 SO4 A 1 403 2 SO4 SO4 . 
E 4 SO4 A 1 404 3 SO4 SO4 . 
F 4 SO4 A 1 405 4 SO4 SO4 . 
G 4 SO4 A 1 406 5 SO4 SO4 . 
H 4 SO4 A 1 407 6 SO4 SO4 . 
I 4 SO4 A 1 408 7 SO4 SO4 . 
J 4 SO4 A 1 409 8 SO4 SO4 . 
K 4 SO4 A 1 410 9 SO4 SO4 . 
L 4 SO4 A 1 411 10 SO4 SO4 . 
M 5 EDO A 1 412 11 EDO EDO . 
N 5 EDO A 1 413 12 EDO EDO . 
O 5 EDO A 1 414 13 EDO EDO . 
P 6 GOL A 1 415 14 GOL GOL . 
Q 6 GOL A 1 416 15 GOL GOL . 
R 6 GOL A 1 417 16 GOL GOL . 
S 6 GOL A 1 418 18 GOL GOL . 
T 7 HOH A 1 501 27 HOH HOH . 
T 7 HOH A 2 502 40 HOH HOH . 
T 7 HOH A 3 503 39 HOH HOH . 
T 7 HOH A 4 504 37 HOH HOH . 
T 7 HOH A 5 505 55 HOH HOH . 
T 7 HOH A 6 506 41 HOH HOH . 
T 7 HOH A 7 507 24 HOH HOH . 
T 7 HOH A 8 508 74 HOH HOH . 
T 7 HOH A 9 509 61 HOH HOH . 
T 7 HOH A 10 510 56 HOH HOH . 
T 7 HOH A 11 511 47 HOH HOH . 
T 7 HOH A 12 512 43 HOH HOH . 
T 7 HOH A 13 513 68 HOH HOH . 
T 7 HOH A 14 514 21 HOH HOH . 
T 7 HOH A 15 515 42 HOH HOH . 
T 7 HOH A 16 516 53 HOH HOH . 
T 7 HOH A 17 517 78 HOH HOH . 
T 7 HOH A 18 518 72 HOH HOH . 
T 7 HOH A 19 519 33 HOH HOH . 
T 7 HOH A 20 520 66 HOH HOH . 
T 7 HOH A 21 521 63 HOH HOH . 
T 7 HOH A 22 522 79 HOH HOH . 
T 7 HOH A 23 523 67 HOH HOH . 
T 7 HOH A 24 524 38 HOH HOH . 
T 7 HOH A 25 525 70 HOH HOH . 
T 7 HOH A 26 526 58 HOH HOH . 
T 7 HOH A 27 527 52 HOH HOH . 
T 7 HOH A 28 528 60 HOH HOH . 
T 7 HOH A 29 529 76 HOH HOH . 
T 7 HOH A 30 530 34 HOH HOH . 
T 7 HOH A 31 531 77 HOH HOH . 
T 7 HOH A 32 532 50 HOH HOH . 
T 7 HOH A 33 533 22 HOH HOH . 
T 7 HOH A 34 534 69 HOH HOH . 
T 7 HOH A 35 535 44 HOH HOH . 
T 7 HOH A 36 536 75 HOH HOH . 
T 7 HOH A 37 537 48 HOH HOH . 
T 7 HOH A 38 538 64 HOH HOH . 
T 7 HOH A 39 539 28 HOH HOH . 
T 7 HOH A 40 540 36 HOH HOH . 
T 7 HOH A 41 541 59 HOH HOH . 
T 7 HOH A 42 542 26 HOH HOH . 
T 7 HOH A 43 543 30 HOH HOH . 
T 7 HOH A 44 544 65 HOH HOH . 
T 7 HOH A 45 545 35 HOH HOH . 
T 7 HOH A 46 546 73 HOH HOH . 
T 7 HOH A 47 547 57 HOH HOH . 
T 7 HOH A 48 548 71 HOH HOH . 
T 7 HOH A 49 549 54 HOH HOH . 
T 7 HOH A 50 550 25 HOH HOH . 
T 7 HOH A 51 551 62 HOH HOH . 
T 7 HOH A 52 552 23 HOH HOH . 
T 7 HOH A 53 553 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2P LAQ . . . B 2 10.411 46.263 84.835 1 85.56 ? O2P LAQ 401 A 1 
HETATM 2 P P LAQ . . . B 2 11.356 45.943 83.725 1 78.9 ? P LAQ 401 A 1 
HETATM 3 O O1P LAQ . . . B 2 11.309 44.571 83.139 1 73.36 ? O1P LAQ 401 A 1 
HETATM 4 O O3P LAQ . . . B 2 12.879 46.351 84.11 1 77.77 ? O3P LAQ 401 A 1 
HETATM 5 C C10 LAQ . . . B 2 13.271 47.531 84.612 1 73.99 ? C10 LAQ 401 A 1 
HETATM 6 C C11 LAQ . . . B 2 14.329 47.368 85.668 1 72.08 ? C11 LAQ 401 A 1 
HETATM 7 C C12 LAQ . . . B 2 15.656 47.984 85.315 1 69.43 ? C12 LAQ 401 A 1 
HETATM 8 C C13 LAQ . . . B 2 16.039 49.179 86.176 1 70.65 ? C13 LAQ 401 A 1 
HETATM 9 C C14 LAQ . . . B 2 17.448 49.128 86.765 1 71.73 ? C14 LAQ 401 A 1 
HETATM 10 C C15 LAQ . . . B 2 18.518 49.831 85.95 1 72.61 ? C15 LAQ 401 A 1 
HETATM 11 S S15 LAQ . . . B 2 19.699 50.718 87.041 1 89.59 ? S15 LAQ 401 A 1 
HETATM 12 S S17 LAQ . . . B 2 21.393 50.284 85.901 1 72.85 ? S17 LAQ 401 A 1 
HETATM 13 C C17 LAQ . . . B 2 20.399 49.71 84.523 1 61.57 ? C17 LAQ 401 A 1 
HETATM 14 C C16 LAQ . . . B 2 19.326 48.877 85.089 1 60.95 ? C16 LAQ 401 A 1 
HETATM 15 O O10 LAQ . . . B 2 12.841 48.589 84.261 1 69.49 ? O10 LAQ 401 A 1 
HETATM 16 O O5' LAQ . . . B 2 10.999 46.946 82.525 1 79.66 ? O5' LAQ 401 A 1 
HETATM 17 C C5' LAQ . . . B 2 11.754 46.895 81.285 1 78.16 ? C5' LAQ 401 A 1 
HETATM 18 C C4' LAQ . . . B 2 11.036 47.715 80.242 1 76.96 ? C4' LAQ 401 A 1 
HETATM 19 C C3' LAQ . . . B 2 11.529 47.585 78.797 1 76.17 ? C3' LAQ 401 A 1 
HETATM 20 O O3' LAQ . . . B 2 11.012 46.424 78.156 1 77.31 ? O3' LAQ 401 A 1 
HETATM 21 C C2' LAQ . . . B 2 10.984 48.885 78.199 1 75.97 ? C2' LAQ 401 A 1 
HETATM 22 O O2' LAQ . . . B 2 9.605 48.815 77.905 1 76.32 ? O2' LAQ 401 A 1 
HETATM 23 C C1' LAQ . . . B 2 11.245 49.87 79.34 1 74.64 ? C1' LAQ 401 A 1 
HETATM 24 O O4' LAQ . . . B 2 11.203 49.125 80.538 1 75.06 ? O4' LAQ 401 A 1 
HETATM 25 N N9 LAQ . . . B 2 12.535 50.568 79.289 1 71.3 ? N9 LAQ 401 A 1 
HETATM 26 C C8 LAQ . . . B 2 13.537 50.46 78.349 1 67.57 ? C8 LAQ 401 A 1 
HETATM 27 N N7 LAQ . . . B 2 14.564 51.234 78.613 1 64.21 ? N7 LAQ 401 A 1 
HETATM 28 C C5 LAQ . . . B 2 14.222 51.886 79.79 1 69.25 ? C5 LAQ 401 A 1 
HETATM 29 C C6 LAQ . . . B 2 14.894 52.836 80.585 1 71.36 ? C6 LAQ 401 A 1 
HETATM 30 N N6 LAQ . . . B 2 16.103 53.317 80.302 1 66.67 ? N6 LAQ 401 A 1 
HETATM 31 N N1 LAQ . . . B 2 14.26 53.274 81.701 1 71.58 ? N1 LAQ 401 A 1 
HETATM 32 C C2 LAQ . . . B 2 13.043 52.786 81.982 1 71.76 ? C2 LAQ 401 A 1 
HETATM 33 N N3 LAQ . . . B 2 12.318 51.895 81.31 1 73.76 ? N3 LAQ 401 A 1 
HETATM 34 C C4 LAQ . . . B 2 12.973 51.48 80.212 1 72.33 ? C4 LAQ 401 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           284 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           34 
#