data_8CRN # _model_server_result.job_id GymGItCsp8469gep9jLm0A _model_server_result.datetime_utc '2024-11-14 20:42:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8crn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":201}' # _entry.id 8CRN # _exptl.entry_id 8CRN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 670.646 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'Co-linked Tetra-amido macrocyclic ligand' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.415 _cell.angle_gamma 90 _cell.entry_id 8CRN _cell.length_a 192.51 _cell.length_b 57.615 _cell.length_c 57.615 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CRN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 56 A THR 57 1_555 F NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc2 A OG1 THR 75 A THR 76 1_555 F NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc3 F NA NA . A NA 202 1_555 D O THR 56 D THR 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc4 F NA NA . A NA 202 1_555 D OG1 THR 75 D THR 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? # _chem_comp.formula 'C29 H37 Co N7 O6 S' _chem_comp.formula_weight 670.646 _chem_comp.id VJL _chem_comp.mon_nstd_flag . _chem_comp.name 'Co-linked Tetra-amido macrocyclic ligand' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 C27 VJL sing 367 n n C29 C27 VJL sing 368 n n O5 C26 VJL doub 369 n n C27 N6 VJL sing 370 n n C27 C30 VJL sing 371 n n N6 C26 VJL sing 372 n n N6 CO1 VJL sing 373 n n C26 C23 VJL sing 374 n n O6 C30 VJL doub 375 n n C30 N7 VJL sing 376 n n C25 C23 VJL sing 377 n n C23 C22 VJL sing 378 n n C23 C24 VJL sing 379 n n CO1 N7 VJL sing 380 n n CO1 N5 VJL sing 381 n n CO1 N4 VJL sing 382 n n N7 C15 VJL sing 383 n n N5 C22 VJL sing 384 n n N5 C19 VJL sing 385 n n C22 O4 VJL doub 386 n n C20 C19 VJL sing 387 n n C15 C14 VJL doub 388 n y C15 C16 VJL sing 389 n y C14 C13 VJL sing 390 n y C19 C21 VJL sing 391 n n C19 C18 VJL sing 392 n n N4 C16 VJL sing 393 n n N4 C18 VJL sing 394 n n C16 C17 VJL doub 395 n y C18 O3 VJL doub 396 n n C13 C12 VJL doub 397 n y C17 C12 VJL sing 398 n y C12 C11 VJL sing 399 n n C11 O2 VJL doub 400 n n C11 N3 VJL sing 401 n n N3 C10 VJL sing 402 n n C10 C9 VJL sing 403 n n C8 C9 VJL sing 404 n n C8 C6 VJL sing 405 n n C5 C6 VJL sing 406 n n C5 S1 VJL sing 407 n n C5 C2 VJL sing 408 n n C4 S1 VJL sing 409 n n C4 C3 VJL sing 410 n n C2 C3 VJL sing 411 n n C2 N1 VJL sing 412 n n C3 N2 VJL sing 413 n n N1 C1 VJL sing 414 n n N2 C1 VJL sing 415 n n C1 O1 VJL doub 416 n n C13 H1 VJL sing 417 n n C20 H2 VJL sing 418 n n C20 H3 VJL sing 419 n n C20 H4 VJL sing 420 n n C21 H5 VJL sing 421 n n C21 H6 VJL sing 422 n n C21 H7 VJL sing 423 n n C24 H8 VJL sing 424 n n C24 H9 VJL sing 425 n n C24 H10 VJL sing 426 n n C14 H11 VJL sing 427 n n C25 H12 VJL sing 428 n n C25 H13 VJL sing 429 n n C25 H14 VJL sing 430 n n C17 H15 VJL sing 431 n n C29 H16 VJL sing 432 n n C29 H17 VJL sing 433 n n C29 H18 VJL sing 434 n n C28 H19 VJL sing 435 n n C28 H20 VJL sing 436 n n C28 H21 VJL sing 437 n n N3 H22 VJL sing 438 n n C10 H23 VJL sing 439 n n C10 H24 VJL sing 440 n n C9 H25 VJL sing 441 n n C9 H26 VJL sing 442 n n C8 H27 VJL sing 443 n n C8 H28 VJL sing 444 n n C6 H29 VJL sing 445 n n C6 H30 VJL sing 446 n n C5 H31 VJL sing 447 n n C2 H32 VJL sing 448 n n N1 H33 VJL sing 449 n n N2 H34 VJL sing 450 n n C3 H35 VJL sing 451 n n C4 H36 VJL sing 452 n n C4 H37 VJL sing 453 n n # _atom_sites.entry_id 8CRN _atom_sites.fract_transf_matrix[1][1] 0.005195 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001629 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017357 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01819 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 VJL A 1 201 201 VJL O6T . F 3 NA A 1 202 1 NA NA . G 2 VJL B 1 201 201 VJL O6T . H 4 SO4 B 1 202 1 SO4 SO4 . I 2 VJL C 1 201 201 VJL O6T . J 2 VJL D 1 201 201 VJL O6T . K 5 HOH A 1 301 117 HOH HOH . K 5 HOH A 2 302 65 HOH HOH . K 5 HOH A 3 303 23 HOH HOH . K 5 HOH A 4 304 10 HOH HOH . K 5 HOH A 5 305 16 HOH HOH . K 5 HOH A 6 306 104 HOH HOH . K 5 HOH A 7 307 103 HOH HOH . K 5 HOH A 8 308 76 HOH HOH . K 5 HOH A 9 309 52 HOH HOH . K 5 HOH A 10 310 114 HOH HOH . K 5 HOH A 11 311 20 HOH HOH . K 5 HOH A 12 312 51 HOH HOH . K 5 HOH A 13 313 41 HOH HOH . K 5 HOH A 14 314 55 HOH HOH . K 5 HOH A 15 315 89 HOH HOH . K 5 HOH A 16 316 19 HOH HOH . K 5 HOH A 17 317 102 HOH HOH . K 5 HOH A 18 318 107 HOH HOH . K 5 HOH A 19 319 125 HOH HOH . K 5 HOH A 20 320 106 HOH HOH . K 5 HOH A 21 321 40 HOH HOH . K 5 HOH A 22 322 36 HOH HOH . K 5 HOH A 23 323 115 HOH HOH . K 5 HOH A 24 324 97 HOH HOH . L 5 HOH B 1 301 86 HOH HOH . L 5 HOH B 2 302 95 HOH HOH . L 5 HOH B 3 303 79 HOH HOH . L 5 HOH B 4 304 29 HOH HOH . L 5 HOH B 5 305 27 HOH HOH . L 5 HOH B 6 306 4 HOH HOH . L 5 HOH B 7 307 42 HOH HOH . L 5 HOH B 8 308 54 HOH HOH . L 5 HOH B 9 309 58 HOH HOH . L 5 HOH B 10 310 6 HOH HOH . L 5 HOH B 11 311 12 HOH HOH . L 5 HOH B 12 312 24 HOH HOH . L 5 HOH B 13 313 62 HOH HOH . L 5 HOH B 14 314 68 HOH HOH . L 5 HOH B 15 315 44 HOH HOH . L 5 HOH B 16 316 11 HOH HOH . L 5 HOH B 17 317 77 HOH HOH . L 5 HOH B 18 318 18 HOH HOH . L 5 HOH B 19 319 1 HOH HOH . L 5 HOH B 20 320 9 HOH HOH . L 5 HOH B 21 321 25 HOH HOH . L 5 HOH B 22 322 123 HOH HOH . L 5 HOH B 23 323 118 HOH HOH . L 5 HOH B 24 324 75 HOH HOH . L 5 HOH B 25 325 85 HOH HOH . L 5 HOH B 26 326 59 HOH HOH . L 5 HOH B 27 327 14 HOH HOH . L 5 HOH B 28 328 84 HOH HOH . L 5 HOH B 29 329 69 HOH HOH . L 5 HOH B 30 330 112 HOH HOH . L 5 HOH B 31 331 45 HOH HOH . L 5 HOH B 32 332 46 HOH HOH . L 5 HOH B 33 333 38 HOH HOH . L 5 HOH B 34 334 119 HOH HOH . L 5 HOH B 35 335 111 HOH HOH . L 5 HOH B 36 336 96 HOH HOH . L 5 HOH B 37 337 100 HOH HOH . L 5 HOH B 38 338 108 HOH HOH . M 5 HOH C 1 301 80 HOH HOH . M 5 HOH C 2 302 78 HOH HOH . M 5 HOH C 3 303 37 HOH HOH . M 5 HOH C 4 304 90 HOH HOH . M 5 HOH C 5 305 35 HOH HOH . M 5 HOH C 6 306 87 HOH HOH . M 5 HOH C 7 307 39 HOH HOH . M 5 HOH C 8 308 72 HOH HOH . M 5 HOH C 9 309 3 HOH HOH . M 5 HOH C 10 310 31 HOH HOH . M 5 HOH C 11 311 61 HOH HOH . M 5 HOH C 12 312 17 HOH HOH . M 5 HOH C 13 313 2 HOH HOH . M 5 HOH C 14 314 110 HOH HOH . M 5 HOH C 15 315 122 HOH HOH . M 5 HOH C 16 316 34 HOH HOH . M 5 HOH C 17 317 67 HOH HOH . M 5 HOH C 18 318 5 HOH HOH . M 5 HOH C 19 319 57 HOH HOH . M 5 HOH C 20 320 26 HOH HOH . M 5 HOH C 21 321 47 HOH HOH . M 5 HOH C 22 322 121 HOH HOH . M 5 HOH C 23 323 71 HOH HOH . M 5 HOH C 24 324 53 HOH HOH . M 5 HOH C 25 325 94 HOH HOH . M 5 HOH C 26 326 126 HOH HOH . M 5 HOH C 27 327 22 HOH HOH . M 5 HOH C 28 328 32 HOH HOH . M 5 HOH C 29 329 91 HOH HOH . M 5 HOH C 30 330 15 HOH HOH . M 5 HOH C 31 331 81 HOH HOH . M 5 HOH C 32 332 74 HOH HOH . M 5 HOH C 33 333 48 HOH HOH . M 5 HOH C 34 334 116 HOH HOH . M 5 HOH C 35 335 33 HOH HOH . M 5 HOH C 36 336 56 HOH HOH . M 5 HOH C 37 337 99 HOH HOH . M 5 HOH C 38 338 109 HOH HOH . M 5 HOH C 39 339 101 HOH HOH . N 5 HOH D 1 301 105 HOH HOH . N 5 HOH D 2 302 73 HOH HOH . N 5 HOH D 3 303 83 HOH HOH . N 5 HOH D 4 304 93 HOH HOH . N 5 HOH D 5 305 30 HOH HOH . N 5 HOH D 6 306 63 HOH HOH . N 5 HOH D 7 307 7 HOH HOH . N 5 HOH D 8 308 82 HOH HOH . N 5 HOH D 9 309 92 HOH HOH . N 5 HOH D 10 310 50 HOH HOH . N 5 HOH D 11 311 8 HOH HOH . N 5 HOH D 12 312 70 HOH HOH . N 5 HOH D 13 313 13 HOH HOH . N 5 HOH D 14 314 28 HOH HOH . N 5 HOH D 15 315 64 HOH HOH . N 5 HOH D 16 316 49 HOH HOH . N 5 HOH D 17 317 66 HOH HOH . N 5 HOH D 18 318 60 HOH HOH . N 5 HOH D 19 319 88 HOH HOH . N 5 HOH D 20 320 43 HOH HOH . N 5 HOH D 21 321 120 HOH HOH . N 5 HOH D 22 322 21 HOH HOH . N 5 HOH D 23 323 124 HOH HOH . N 5 HOH D 24 324 113 HOH HOH . N 5 HOH D 25 325 98 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C13 VJL . . . J 2 40.991 -7.625 0.251 1 90.89 0 C13 VJL 201 D 1 HETATM 2 C C15 VJL . . . J 2 42.22 -5.705 0.348 1 122.21 0 C15 VJL 201 D 1 HETATM 3 C C20 VJL . . . J 2 41.461 -0.528 1.935 1 86.7 0 C20 VJL 201 D 1 HETATM 4 C C21 VJL . . . J 2 40.819 -1.729 4.085 1 103.71 0 C21 VJL 201 D 1 HETATM 5 C C24 VJL . . . J 2 45.27 -2.892 5.302 1 124.66 0 C24 VJL 201 D 1 HETATM 6 C C11 VJL . . . J 2 38.864 -8.033 1.151 1 53.81 0 C11 VJL 201 D 1 HETATM 7 C C12 VJL . . . J 2 39.939 -7.063 0.959 1 80.31 0 C12 VJL 201 D 1 HETATM 8 C C14 VJL . . . J 2 42.153 -7.011 -0.078 1 100.84 0 C14 VJL 201 D 1 HETATM 9 C C18 VJL . . . J 2 40.747 -2.858 1.942 1 122.87 0 C18 VJL 201 D 1 HETATM 10 C C23 VJL . . . J 2 45.246 -2.509 3.809 1 134.59 0 C23 VJL 201 D 1 HETATM 11 C C25 VJL . . . J 2 46.337 -1.426 3.689 1 125.91 0 C25 VJL 201 D 1 HETATM 12 O O3 VJL . . . J 2 39.619 -2.695 1.563 1 118.92 0 O3 VJL 201 D 1 HETATM 13 O O6 VJL . . . J 2 44.731 -5.98 -1.149 1 108.74 0 O6 VJL 201 D 1 HETATM 14 N N7 VJL . . . J 2 43.293 -4.893 0.154 1 132.56 0 N7 VJL 201 D 1 HETATM 15 N N4 VJL . . . J 2 41.558 -3.769 1.344 1 142.48 0 N4 VJL 201 D 1 HETATM 16 N N6 VJL . . . J 2 45.041 -4.21 1.916 1 128.54 0 N6 VJL 201 D 1 HETATM 17 N N5 VJL . . . J 2 42.921 -2.411 2.854 1 135.94 0 N5 VJL 201 D 1 HETATM 18 O O4 VJL . . . J 2 43.832 -0.57 3.788 1 127.06 0 O4 VJL 201 D 1 HETATM 19 O O5 VJL . . . J 2 46.891 -4.16 3.212 1 127.14 0 O5 VJL 201 D 1 HETATM 20 C C16 VJL . . . J 2 41.169 -5.076 1.075 1 128 0 C16 VJL 201 D 1 HETATM 21 C C27 VJL . . . J 2 45.432 -5.389 1.106 1 115.7 0 C27 VJL 201 D 1 HETATM 22 C C30 VJL . . . J 2 44.498 -5.426 -0.112 1 118.88 0 C30 VJL 201 D 1 HETATM 23 C C19 VJL . . . J 2 41.551 -1.826 2.742 1 110.57 0 C19 VJL 201 D 1 HETATM 24 C C17 VJL . . . J 2 39.979 -5.756 1.405 1 97.31 0 C17 VJL 201 D 1 HETATM 25 C C22 VJL . . . J 2 43.871 -1.789 3.58 1 138.77 0 C22 VJL 201 D 1 HETATM 26 C C29 VJL . . . J 2 46.843 -5.24 0.54 1 104.52 0 C29 VJL 201 D 1 HETATM 27 C C26 VJL . . . J 2 45.733 -3.765 2.993 1 133.98 0 C26 VJL 201 D 1 HETATM 28 C C28 VJL . . . J 2 45.218 -6.716 1.837 1 105.45 0 C28 VJL 201 D 1 HETATM 29 N N3 VJL . . . J 2 37.848 -8.165 2.005 1 50.3 0 N3 VJL 201 D 1 HETATM 30 C C10 VJL . . . J 2 37.842 -9.782 1.772 1 38 0 C10 VJL 201 D 1 HETATM 31 C C9 VJL . . . J 2 37.685 -10.651 0.496 1 37.52 0 C9 VJL 201 D 1 HETATM 32 C C8 VJL . . . J 2 36.612 -10.167 -0.498 1 26.62 0 C8 VJL 201 D 1 HETATM 33 C C6 VJL . . . J 2 36.514 -10.986 -1.754 1 26.58 0 C6 VJL 201 D 1 HETATM 34 C C5 VJL . . . J 2 35.544 -10.445 -2.836 1 27.43 0 C5 VJL 201 D 1 HETATM 35 C C2 VJL . . . J 2 35.541 -11.034 -4.257 1 24.04 0 C2 VJL 201 D 1 HETATM 36 N N1 VJL . . . J 2 35.603 -12.49 -4.223 1 26.1 0 N1 VJL 201 D 1 HETATM 37 C C1 VJL . . . J 2 34.457 -12.973 -4.797 1 28.06 0 C1 VJL 201 D 1 HETATM 38 O O1 VJL . . . J 2 34.214 -14.149 -4.901 1 27.82 0 O1 VJL 201 D 1 HETATM 39 N N2 VJL . . . J 2 33.619 -12.001 -5.212 1 22.91 0 N2 VJL 201 D 1 HETATM 40 C C3 VJL . . . J 2 34.148 -10.671 -4.933 1 26.1 0 C3 VJL 201 D 1 HETATM 41 C C4 VJL . . . J 2 33.228 -9.968 -3.87 1 26.34 0 C4 VJL 201 D 1 HETATM 42 S S1 VJL . . . J 2 33.827 -10.552 -2.255 1 29.75 0 S1 VJL 201 D 1 HETATM 43 O O2 VJL . . . J 2 39.247 -9.131 0.985 1 53.71 0 O2 VJL 201 D 1 HETATM 44 CO CO1 VJL . . . J 2 43.396 -3.528 1.375 1 169.23 0 CO1 VJL 201 D 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 365 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 44 #