data_8CRN # _model_server_result.job_id UKAN-WTz7BKPzuAg4V2QVQ _model_server_result.datetime_utc '2024-11-14 20:18:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8crn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":202}' # _entry.id 8CRN # _exptl.entry_id 8CRN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.415 _cell.angle_gamma 90 _cell.entry_id 8CRN _cell.length_a 192.51 _cell.length_b 57.615 _cell.length_c 57.615 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CRN _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O THR 56 A THR 57 1_555 F NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.909 ? metalc ? metalc2 A OG1 THR 75 A THR 76 1_555 F NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.577 ? metalc ? metalc3 F NA NA . A NA 202 1_555 D O THR 56 D THR 57 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.914 ? metalc ? metalc4 F NA NA . A NA 202 1_555 D OG1 THR 75 D THR 76 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8CRN _atom_sites.fract_transf_matrix[1][1] 0.005195 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001629 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017357 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01819 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 VJL A 1 201 201 VJL O6T . F 3 NA A 1 202 1 NA NA . G 2 VJL B 1 201 201 VJL O6T . H 4 SO4 B 1 202 1 SO4 SO4 . I 2 VJL C 1 201 201 VJL O6T . J 2 VJL D 1 201 201 VJL O6T . K 5 HOH A 1 301 117 HOH HOH . K 5 HOH A 2 302 65 HOH HOH . K 5 HOH A 3 303 23 HOH HOH . K 5 HOH A 4 304 10 HOH HOH . K 5 HOH A 5 305 16 HOH HOH . K 5 HOH A 6 306 104 HOH HOH . K 5 HOH A 7 307 103 HOH HOH . K 5 HOH A 8 308 76 HOH HOH . K 5 HOH A 9 309 52 HOH HOH . K 5 HOH A 10 310 114 HOH HOH . K 5 HOH A 11 311 20 HOH HOH . K 5 HOH A 12 312 51 HOH HOH . K 5 HOH A 13 313 41 HOH HOH . K 5 HOH A 14 314 55 HOH HOH . K 5 HOH A 15 315 89 HOH HOH . K 5 HOH A 16 316 19 HOH HOH . K 5 HOH A 17 317 102 HOH HOH . K 5 HOH A 18 318 107 HOH HOH . K 5 HOH A 19 319 125 HOH HOH . K 5 HOH A 20 320 106 HOH HOH . K 5 HOH A 21 321 40 HOH HOH . K 5 HOH A 22 322 36 HOH HOH . K 5 HOH A 23 323 115 HOH HOH . K 5 HOH A 24 324 97 HOH HOH . L 5 HOH B 1 301 86 HOH HOH . L 5 HOH B 2 302 95 HOH HOH . L 5 HOH B 3 303 79 HOH HOH . L 5 HOH B 4 304 29 HOH HOH . L 5 HOH B 5 305 27 HOH HOH . L 5 HOH B 6 306 4 HOH HOH . L 5 HOH B 7 307 42 HOH HOH . L 5 HOH B 8 308 54 HOH HOH . L 5 HOH B 9 309 58 HOH HOH . L 5 HOH B 10 310 6 HOH HOH . L 5 HOH B 11 311 12 HOH HOH . L 5 HOH B 12 312 24 HOH HOH . L 5 HOH B 13 313 62 HOH HOH . L 5 HOH B 14 314 68 HOH HOH . L 5 HOH B 15 315 44 HOH HOH . L 5 HOH B 16 316 11 HOH HOH . L 5 HOH B 17 317 77 HOH HOH . L 5 HOH B 18 318 18 HOH HOH . L 5 HOH B 19 319 1 HOH HOH . L 5 HOH B 20 320 9 HOH HOH . L 5 HOH B 21 321 25 HOH HOH . L 5 HOH B 22 322 123 HOH HOH . L 5 HOH B 23 323 118 HOH HOH . L 5 HOH B 24 324 75 HOH HOH . L 5 HOH B 25 325 85 HOH HOH . L 5 HOH B 26 326 59 HOH HOH . L 5 HOH B 27 327 14 HOH HOH . L 5 HOH B 28 328 84 HOH HOH . L 5 HOH B 29 329 69 HOH HOH . L 5 HOH B 30 330 112 HOH HOH . L 5 HOH B 31 331 45 HOH HOH . L 5 HOH B 32 332 46 HOH HOH . L 5 HOH B 33 333 38 HOH HOH . L 5 HOH B 34 334 119 HOH HOH . L 5 HOH B 35 335 111 HOH HOH . L 5 HOH B 36 336 96 HOH HOH . L 5 HOH B 37 337 100 HOH HOH . L 5 HOH B 38 338 108 HOH HOH . M 5 HOH C 1 301 80 HOH HOH . M 5 HOH C 2 302 78 HOH HOH . M 5 HOH C 3 303 37 HOH HOH . M 5 HOH C 4 304 90 HOH HOH . M 5 HOH C 5 305 35 HOH HOH . M 5 HOH C 6 306 87 HOH HOH . M 5 HOH C 7 307 39 HOH HOH . M 5 HOH C 8 308 72 HOH HOH . M 5 HOH C 9 309 3 HOH HOH . M 5 HOH C 10 310 31 HOH HOH . M 5 HOH C 11 311 61 HOH HOH . M 5 HOH C 12 312 17 HOH HOH . M 5 HOH C 13 313 2 HOH HOH . M 5 HOH C 14 314 110 HOH HOH . M 5 HOH C 15 315 122 HOH HOH . M 5 HOH C 16 316 34 HOH HOH . M 5 HOH C 17 317 67 HOH HOH . M 5 HOH C 18 318 5 HOH HOH . M 5 HOH C 19 319 57 HOH HOH . M 5 HOH C 20 320 26 HOH HOH . M 5 HOH C 21 321 47 HOH HOH . M 5 HOH C 22 322 121 HOH HOH . M 5 HOH C 23 323 71 HOH HOH . M 5 HOH C 24 324 53 HOH HOH . M 5 HOH C 25 325 94 HOH HOH . M 5 HOH C 26 326 126 HOH HOH . M 5 HOH C 27 327 22 HOH HOH . M 5 HOH C 28 328 32 HOH HOH . M 5 HOH C 29 329 91 HOH HOH . M 5 HOH C 30 330 15 HOH HOH . M 5 HOH C 31 331 81 HOH HOH . M 5 HOH C 32 332 74 HOH HOH . M 5 HOH C 33 333 48 HOH HOH . M 5 HOH C 34 334 116 HOH HOH . M 5 HOH C 35 335 33 HOH HOH . M 5 HOH C 36 336 56 HOH HOH . M 5 HOH C 37 337 99 HOH HOH . M 5 HOH C 38 338 109 HOH HOH . M 5 HOH C 39 339 101 HOH HOH . N 5 HOH D 1 301 105 HOH HOH . N 5 HOH D 2 302 73 HOH HOH . N 5 HOH D 3 303 83 HOH HOH . N 5 HOH D 4 304 93 HOH HOH . N 5 HOH D 5 305 30 HOH HOH . N 5 HOH D 6 306 63 HOH HOH . N 5 HOH D 7 307 7 HOH HOH . N 5 HOH D 8 308 82 HOH HOH . N 5 HOH D 9 309 92 HOH HOH . N 5 HOH D 10 310 50 HOH HOH . N 5 HOH D 11 311 8 HOH HOH . N 5 HOH D 12 312 70 HOH HOH . N 5 HOH D 13 313 13 HOH HOH . N 5 HOH D 14 314 28 HOH HOH . N 5 HOH D 15 315 64 HOH HOH . N 5 HOH D 16 316 49 HOH HOH . N 5 HOH D 17 317 66 HOH HOH . N 5 HOH D 18 318 60 HOH HOH . N 5 HOH D 19 319 88 HOH HOH . N 5 HOH D 20 320 43 HOH HOH . N 5 HOH D 21 321 120 HOH HOH . N 5 HOH D 22 322 21 HOH HOH . N 5 HOH D 23 323 124 HOH HOH . N 5 HOH D 24 324 113 HOH HOH . N 5 HOH D 25 325 98 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x 22.653 _atom_site.Cartn_y -11.627 _atom_site.Cartn_z 4.509 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.57 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 202 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #