data_8CRP
#
_model_server_result.job_id            4lKh88xXGzmpve9ZnZTSNg 
_model_server_result.datetime_utc      '2024-10-11 03:16:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8crp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":201}' 
#
_entry.id    8CRP 
#
_exptl.entry_id    8CRP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              670.646 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'Co-linked Tetra-amido macrocyclic ligand' 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.442 
_cell.angle_gamma         90 
_cell.entry_id            8CRP 
_cell.length_a            192.499 
_cell.length_b            57.701 
_cell.length_c            57.701 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CRP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F CO1 VJL . B VJL 201 1_555 M O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? 
metalc ? metalc2 I CO1 VJL . C VJL 201 1_555 N O HOH . C HOH 318 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? 
#
_chem_comp.formula           'C29 H37 Co N7 O6 S' 
_chem_comp.formula_weight    670.646 
_chem_comp.id                VJL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'Co-linked Tetra-amido macrocyclic ligand' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C28 C27 VJL sing 367 n n 
C29 C27 VJL sing 368 n n 
O5 C26 VJL doub 369 n n 
C27 N6 VJL sing 370 n n 
C27 C30 VJL sing 371 n n 
N6 C26 VJL sing 372 n n 
N6 CO1 VJL sing 373 n n 
C26 C23 VJL sing 374 n n 
O6 C30 VJL doub 375 n n 
C30 N7 VJL sing 376 n n 
C25 C23 VJL sing 377 n n 
C23 C22 VJL sing 378 n n 
C23 C24 VJL sing 379 n n 
CO1 N7 VJL sing 380 n n 
CO1 N5 VJL sing 381 n n 
CO1 N4 VJL sing 382 n n 
N7 C15 VJL sing 383 n n 
N5 C22 VJL sing 384 n n 
N5 C19 VJL sing 385 n n 
C22 O4 VJL doub 386 n n 
C20 C19 VJL sing 387 n n 
C15 C14 VJL doub 388 n y 
C15 C16 VJL sing 389 n y 
C14 C13 VJL sing 390 n y 
C19 C21 VJL sing 391 n n 
C19 C18 VJL sing 392 n n 
N4 C16 VJL sing 393 n n 
N4 C18 VJL sing 394 n n 
C16 C17 VJL doub 395 n y 
C18 O3 VJL doub 396 n n 
C13 C12 VJL doub 397 n y 
C17 C12 VJL sing 398 n y 
C12 C11 VJL sing 399 n n 
C11 O2 VJL doub 400 n n 
C11 N3 VJL sing 401 n n 
N3 C10 VJL sing 402 n n 
C10 C9 VJL sing 403 n n 
C8 C9 VJL sing 404 n n 
C8 C6 VJL sing 405 n n 
C5 C6 VJL sing 406 n n 
C5 S1 VJL sing 407 n n 
C5 C2 VJL sing 408 n n 
C4 S1 VJL sing 409 n n 
C4 C3 VJL sing 410 n n 
C2 C3 VJL sing 411 n n 
C2 N1 VJL sing 412 n n 
C3 N2 VJL sing 413 n n 
N1 C1 VJL sing 414 n n 
N2 C1 VJL sing 415 n n 
C1 O1 VJL doub 416 n n 
C13 H1 VJL sing 417 n n 
C20 H2 VJL sing 418 n n 
C20 H3 VJL sing 419 n n 
C20 H4 VJL sing 420 n n 
C21 H5 VJL sing 421 n n 
C21 H6 VJL sing 422 n n 
C21 H7 VJL sing 423 n n 
C24 H8 VJL sing 424 n n 
C24 H9 VJL sing 425 n n 
C24 H10 VJL sing 426 n n 
C14 H11 VJL sing 427 n n 
C25 H12 VJL sing 428 n n 
C25 H13 VJL sing 429 n n 
C25 H14 VJL sing 430 n n 
C17 H15 VJL sing 431 n n 
C29 H16 VJL sing 432 n n 
C29 H17 VJL sing 433 n n 
C29 H18 VJL sing 434 n n 
C28 H19 VJL sing 435 n n 
C28 H20 VJL sing 436 n n 
C28 H21 VJL sing 437 n n 
N3 H22 VJL sing 438 n n 
C10 H23 VJL sing 439 n n 
C10 H24 VJL sing 440 n n 
C9 H25 VJL sing 441 n n 
C9 H26 VJL sing 442 n n 
C8 H27 VJL sing 443 n n 
C8 H28 VJL sing 444 n n 
C6 H29 VJL sing 445 n n 
C6 H30 VJL sing 446 n n 
C5 H31 VJL sing 447 n n 
C2 H32 VJL sing 448 n n 
N1 H33 VJL sing 449 n n 
N2 H34 VJL sing 450 n n 
C3 H35 VJL sing 451 n n 
C4 H36 VJL sing 452 n n 
C4 H37 VJL sing 453 n n 
#
_atom_sites.entry_id                     8CRP 
_atom_sites.fract_transf_matrix[1][1]    0.005195 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001632 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017331 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018166 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 VJL A 1 201 201 VJL O6T . 
F 2 VJL B 1 201 201 VJL O6T . 
G 3 SO4 B 1 202 1 SO4 SO4 . 
H 3 SO4 B 1 203 3 SO4 SO4 . 
I 2 VJL C 1 201 201 VJL O6T . 
J 2 VJL D 1 201 201 VJL O6T . 
K 3 SO4 D 1 202 2 SO4 SO4 . 
L 4 HOH A 1 301 11 HOH HOH . 
L 4 HOH A 2 302 48 HOH HOH . 
L 4 HOH A 3 303 71 HOH HOH . 
L 4 HOH A 4 304 56 HOH HOH . 
L 4 HOH A 5 305 45 HOH HOH . 
L 4 HOH A 6 306 40 HOH HOH . 
L 4 HOH A 7 307 60 HOH HOH . 
L 4 HOH A 8 308 58 HOH HOH . 
L 4 HOH A 9 309 57 HOH HOH . 
L 4 HOH A 10 310 12 HOH HOH . 
L 4 HOH A 11 311 44 HOH HOH . 
L 4 HOH A 12 312 63 HOH HOH . 
L 4 HOH A 13 313 32 HOH HOH . 
L 4 HOH A 14 314 6 HOH HOH . 
M 4 HOH B 1 301 64 HOH HOH . 
M 4 HOH B 2 302 69 HOH HOH . 
M 4 HOH B 3 303 27 HOH HOH . 
M 4 HOH B 4 304 7 HOH HOH . 
M 4 HOH B 5 305 4 HOH HOH . 
M 4 HOH B 6 306 33 HOH HOH . 
M 4 HOH B 7 307 46 HOH HOH . 
M 4 HOH B 8 308 70 HOH HOH . 
M 4 HOH B 9 309 54 HOH HOH . 
M 4 HOH B 10 310 17 HOH HOH . 
M 4 HOH B 11 311 39 HOH HOH . 
M 4 HOH B 12 312 29 HOH HOH . 
M 4 HOH B 13 313 26 HOH HOH . 
M 4 HOH B 14 314 52 HOH HOH . 
M 4 HOH B 15 315 23 HOH HOH . 
M 4 HOH B 16 316 20 HOH HOH . 
M 4 HOH B 17 317 37 HOH HOH . 
M 4 HOH B 18 318 41 HOH HOH . 
M 4 HOH B 19 319 53 HOH HOH . 
M 4 HOH B 20 320 28 HOH HOH . 
M 4 HOH B 21 321 14 HOH HOH . 
M 4 HOH B 22 322 68 HOH HOH . 
M 4 HOH B 23 323 3 HOH HOH . 
M 4 HOH B 24 324 55 HOH HOH . 
M 4 HOH B 25 325 77 HOH HOH . 
N 4 HOH C 1 301 18 HOH HOH . 
N 4 HOH C 2 302 67 HOH HOH . 
N 4 HOH C 3 303 50 HOH HOH . 
N 4 HOH C 4 304 38 HOH HOH . 
N 4 HOH C 5 305 9 HOH HOH . 
N 4 HOH C 6 306 5 HOH HOH . 
N 4 HOH C 7 307 49 HOH HOH . 
N 4 HOH C 8 308 30 HOH HOH . 
N 4 HOH C 9 309 75 HOH HOH . 
N 4 HOH C 10 310 36 HOH HOH . 
N 4 HOH C 11 311 16 HOH HOH . 
N 4 HOH C 12 312 62 HOH HOH . 
N 4 HOH C 13 313 74 HOH HOH . 
N 4 HOH C 14 314 47 HOH HOH . 
N 4 HOH C 15 315 73 HOH HOH . 
N 4 HOH C 16 316 72 HOH HOH . 
N 4 HOH C 17 317 21 HOH HOH . 
N 4 HOH C 18 318 65 HOH HOH . 
N 4 HOH C 19 319 13 HOH HOH . 
N 4 HOH C 20 320 42 HOH HOH . 
N 4 HOH C 21 321 22 HOH HOH . 
N 4 HOH C 22 322 10 HOH HOH . 
N 4 HOH C 23 323 1 HOH HOH . 
N 4 HOH C 24 324 51 HOH HOH . 
N 4 HOH C 25 325 66 HOH HOH . 
O 4 HOH D 1 301 61 HOH HOH . 
O 4 HOH D 2 302 59 HOH HOH . 
O 4 HOH D 3 303 15 HOH HOH . 
O 4 HOH D 4 304 31 HOH HOH . 
O 4 HOH D 5 305 8 HOH HOH . 
O 4 HOH D 6 306 25 HOH HOH . 
O 4 HOH D 7 307 34 HOH HOH . 
O 4 HOH D 8 308 24 HOH HOH . 
O 4 HOH D 9 309 19 HOH HOH . 
O 4 HOH D 10 310 35 HOH HOH . 
O 4 HOH D 11 311 43 HOH HOH . 
O 4 HOH D 12 312 2 HOH HOH . 
O 4 HOH D 13 313 76 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C13 VJL . . . E 2 9.937 -4.251 -5.522 1 88.54 0 C13 VJL 201 A 1 
HETATM 2 C C15 VJL . . . E 2 8.387 -3.642 -7.254 1 118.51 0 C15 VJL 201 A 1 
HETATM 3 C C20 VJL . . . E 2 3.423 -1.65 -6.313 1 108.04 0 C20 VJL 201 A 1 
HETATM 4 C C21 VJL . . . E 2 4.499 0.497 -7.18 1 99.16 0 C21 VJL 201 A 1 
HETATM 5 C C24 VJL . . . E 2 4.426 -1.096 -11.923 1 130.18 0 C24 VJL 201 A 1 
HETATM 6 C C11 VJL . . . E 2 9.759 -3.173 -3.253 1 62.38 0 C11 VJL 201 A 1 
HETATM 7 C C12 VJL . . . E 2 9.33 -3.352 -4.661 1 79.59 0 C12 VJL 201 A 1 
HETATM 8 C C14 VJL . . . E 2 9.485 -4.415 -6.82 1 103.84 0 C14 VJL 201 A 1 
HETATM 9 C C18 VJL . . . E 2 5.802 -1.348 -6.301 1 115.73 0 C18 VJL 201 A 1 
HETATM 10 C C23 VJL . . . E 2 4.242 -2.207 -10.861 1 137.85 0 C23 VJL 201 A 1 
HETATM 11 C C25 VJL . . . E 2 2.948 -2.908 -11.297 1 128.6 0 C25 VJL 201 A 1 
HETATM 12 O O3 VJL . . . E 2 6.134 -0.67 -5.371 1 119.58 0 O3 VJL 201 A 1 
HETATM 13 O O6 VJL . . . E 2 9.01 -5.214 -9.485 1 78.66 0 O6 VJL 201 A 1 
HETATM 14 N N7 VJL . . . E 2 7.737 -3.637 -8.479 1 124.17 0 N7 VJL 201 A 1 
HETATM 15 N N4 VJL . . . E 2 6.704 -2.084 -6.981 1 116.9 0 N4 VJL 201 A 1 
HETATM 16 N N6 VJL . . . E 2 5.747 -3.97 -9.917 1 131.49 0 N6 VJL 201 A 1 
HETATM 17 N N5 VJL . . . E 2 4.733 -1.708 -8.443 1 120.09 0 N5 VJL 201 A 1 
HETATM 18 O O4 VJL . . . E 2 3.038 -0.655 -9.513 1 127.75 0 O4 VJL 201 A 1 
HETATM 19 O O5 VJL . . . E 2 6.194 -3.049 -11.94 1 135.27 0 O5 VJL 201 A 1 
HETATM 20 C C16 VJL . . . E 2 7.764 -2.731 -6.37 1 111.67 0 C16 VJL 201 A 1 
HETATM 21 C C27 VJL . . . E 2 6.617 -5.183 -9.925 1 120.7 0 C27 VJL 201 A 1 
HETATM 22 C C30 VJL . . . E 2 7.954 -4.637 -9.388 1 111.06 0 C30 VJL 201 A 1 
HETATM 23 C C19 VJL . . . E 2 4.554 -1.038 -7.136 1 112.57 0 C19 VJL 201 A 1 
HETATM 24 C C17 VJL . . . E 2 8.246 -2.597 -5.078 1 92.18 0 C17 VJL 201 A 1 
HETATM 25 C C22 VJL . . . E 2 3.918 -1.518 -9.498 1 132.46 0 C22 VJL 201 A 1 
HETATM 26 C C29 VJL . . . E 2 6.11 -6.209 -8.9 1 98.39 0 C29 VJL 201 A 1 
HETATM 27 C C26 VJL . . . E 2 5.383 -3.268 -11.019 1 138.66 0 C26 VJL 201 A 1 
HETATM 28 C C28 VJL . . . E 2 6.863 -5.894 -11.264 1 109.84 0 C28 VJL 201 A 1 
HETATM 29 N N3 VJL . . . E 2 10.361 -4.271 -2.659 1 53.84 0 N3 VJL 201 A 1 
HETATM 30 C C10 VJL . . . E 2 9.855 -4.27 -1.218 1 41.72 0 C10 VJL 201 A 1 
HETATM 31 C C9 VJL . . . E 2 10.272 -3.161 -0.262 1 40.68 0 C9 VJL 201 A 1 
HETATM 32 C C8 VJL . . . E 2 11.73 -2.735 -0.35 1 34.65 0 C8 VJL 201 A 1 
HETATM 33 C C6 VJL . . . E 2 11.99 -1.476 0.453 1 31.41 0 C6 VJL 201 A 1 
HETATM 34 C C5 VJL . . . E 2 13.318 -0.753 0.267 1 31.76 0 C5 VJL 201 A 1 
HETATM 35 C C2 VJL . . . E 2 13.528 0.641 0.926 1 30.04 0 C2 VJL 201 A 1 
HETATM 36 N N1 VJL . . . E 2 13.033 0.591 2.295 1 29.46 0 N1 VJL 201 A 1 
HETATM 37 C C1 VJL . . . E 2 14.056 0.778 3.167 1 33.38 0 C1 VJL 201 A 1 
HETATM 38 O O1 VJL . . . E 2 13.959 0.783 4.402 1 32.13 0 O1 VJL 201 A 1 
HETATM 39 N N2 VJL . . . E 2 15.213 0.953 2.536 1 30.55 0 N2 VJL 201 A 1 
HETATM 40 C C3 VJL . . . E 2 15.05 0.88 1.093 1 30.87 0 C3 VJL 201 A 1 
HETATM 41 C C4 VJL . . . E 2 15.818 -0.381 0.637 1 30.92 0 C4 VJL 201 A 1 
HETATM 42 S S1 VJL . . . E 2 14.687 -1.725 0.923 1 34.37 0 S1 VJL 201 A 1 
HETATM 43 O O2 VJL . . . E 2 8.91 -2.748 -2.546 1 63.81 0 O2 VJL 201 A 1 
HETATM 44 CO CO1 VJL . . . E 2 5.957 -3.129 -8.268 1 135.3 0 CO1 VJL 201 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           312 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#