data_8CSB # _model_server_result.job_id YgsShZVHkJoJtf41EBYtIQ _model_server_result.datetime_utc '2024-11-16 16:56:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8csb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 8CSB # _exptl.entry_id 8CSB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CSB _cell.length_a 92.71 _cell.length_b 157.44 _cell.length_c 120.06 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CSB _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,K 1 1,2 B,H,I,J,L 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 60.03 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C HIS 28 A HIS 27 1_555 A N CSO 29 A CSO 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C CSO 29 A CSO 28 1_555 A N ALA 30 A ALA 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 B C HIS 28 B HIS 27 1_555 B N CSO 29 B CSO 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 B C CSO 29 B CSO 28 1_555 B N ALA 30 B ALA 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 374 n n P O2 PO4 sing 375 n n P O3 PO4 sing 376 n n P O4 PO4 sing 377 n n # _atom_sites.entry_id 8CSB _atom_sites.fract_transf_matrix[1][1] 0.010786 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006352 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008329 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 501 1 PO4 PO4 . D 2 PO4 A 1 502 3 PO4 PO4 . E 2 PO4 A 1 503 4 PO4 PO4 . F 3 C5P A 1 504 1 C5P C5P . G 4 CMK A 1 505 2 CMK CMK . H 2 PO4 B 1 501 2 PO4 PO4 . I 4 CMK B 1 502 1 CMK CMK . J 3 C5P B 1 503 2 C5P C5P . K 5 HOH A 1 601 82 HOH HOH . K 5 HOH A 2 602 34 HOH HOH . K 5 HOH A 3 603 37 HOH HOH . K 5 HOH A 4 604 78 HOH HOH . K 5 HOH A 5 605 76 HOH HOH . K 5 HOH A 6 606 33 HOH HOH . K 5 HOH A 7 607 55 HOH HOH . K 5 HOH A 8 608 74 HOH HOH . K 5 HOH A 9 609 69 HOH HOH . K 5 HOH A 10 610 36 HOH HOH . K 5 HOH A 11 611 39 HOH HOH . K 5 HOH A 12 612 62 HOH HOH . K 5 HOH A 13 613 79 HOH HOH . K 5 HOH A 14 614 51 HOH HOH . K 5 HOH A 15 615 21 HOH HOH . K 5 HOH A 16 616 9 HOH HOH . K 5 HOH A 17 617 68 HOH HOH . K 5 HOH A 18 618 44 HOH HOH . K 5 HOH A 19 619 27 HOH HOH . K 5 HOH A 20 620 3 HOH HOH . K 5 HOH A 21 621 30 HOH HOH . K 5 HOH A 22 622 8 HOH HOH . K 5 HOH A 23 623 6 HOH HOH . K 5 HOH A 24 624 73 HOH HOH . K 5 HOH A 25 625 53 HOH HOH . K 5 HOH A 26 626 10 HOH HOH . K 5 HOH A 27 627 49 HOH HOH . K 5 HOH A 28 628 28 HOH HOH . K 5 HOH A 29 629 59 HOH HOH . K 5 HOH A 30 630 20 HOH HOH . K 5 HOH A 31 631 18 HOH HOH . K 5 HOH A 32 632 81 HOH HOH . K 5 HOH A 33 633 56 HOH HOH . K 5 HOH A 34 634 43 HOH HOH . K 5 HOH A 35 635 50 HOH HOH . K 5 HOH A 36 636 66 HOH HOH . K 5 HOH A 37 637 19 HOH HOH . K 5 HOH A 38 638 31 HOH HOH . K 5 HOH A 39 639 58 HOH HOH . K 5 HOH A 40 640 54 HOH HOH . K 5 HOH A 41 641 67 HOH HOH . K 5 HOH A 42 642 83 HOH HOH . K 5 HOH A 43 643 64 HOH HOH . K 5 HOH A 44 644 71 HOH HOH . L 5 HOH B 1 601 75 HOH HOH . L 5 HOH B 2 602 80 HOH HOH . L 5 HOH B 3 603 48 HOH HOH . L 5 HOH B 4 604 13 HOH HOH . L 5 HOH B 5 605 1 HOH HOH . L 5 HOH B 6 606 63 HOH HOH . L 5 HOH B 7 607 57 HOH HOH . L 5 HOH B 8 608 23 HOH HOH . L 5 HOH B 9 609 46 HOH HOH . L 5 HOH B 10 610 61 HOH HOH . L 5 HOH B 11 611 16 HOH HOH . L 5 HOH B 12 612 35 HOH HOH . L 5 HOH B 13 613 25 HOH HOH . L 5 HOH B 14 614 32 HOH HOH . L 5 HOH B 15 615 5 HOH HOH . L 5 HOH B 16 616 17 HOH HOH . L 5 HOH B 17 617 12 HOH HOH . L 5 HOH B 18 618 2 HOH HOH . L 5 HOH B 19 619 14 HOH HOH . L 5 HOH B 20 620 41 HOH HOH . L 5 HOH B 21 621 4 HOH HOH . L 5 HOH B 22 622 38 HOH HOH . L 5 HOH B 23 623 26 HOH HOH . L 5 HOH B 24 624 52 HOH HOH . L 5 HOH B 25 625 72 HOH HOH . L 5 HOH B 26 626 7 HOH HOH . L 5 HOH B 27 627 45 HOH HOH . L 5 HOH B 28 628 85 HOH HOH . L 5 HOH B 29 629 70 HOH HOH . L 5 HOH B 30 630 40 HOH HOH . L 5 HOH B 31 631 47 HOH HOH . L 5 HOH B 32 632 84 HOH HOH . L 5 HOH B 33 633 22 HOH HOH . L 5 HOH B 34 634 11 HOH HOH . L 5 HOH B 35 635 60 HOH HOH . L 5 HOH B 36 636 15 HOH HOH . L 5 HOH B 37 637 24 HOH HOH . L 5 HOH B 38 638 77 HOH HOH . L 5 HOH B 39 639 42 HOH HOH . L 5 HOH B 40 640 65 HOH HOH . L 5 HOH B 41 641 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . D 2 4.318 37.299 51.81 1 132.35 ? P PO4 502 A 1 HETATM 2 O O1 PO4 . . . D 2 4.36 37.18 50.307 1 122.13 ? O1 PO4 502 A 1 HETATM 3 O O2 PO4 . . . D 2 4.51 38.756 52.181 1 132.89 ? O2 PO4 502 A 1 HETATM 4 O O3 PO4 . . . D 2 5.418 36.457 52.422 1 132.82 ? O3 PO4 502 A 1 HETATM 5 O O4 PO4 . . . D 2 2.972 36.792 52.285 1 134 ? O4 PO4 502 A 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 5 #