data_8CSG # _model_server_result.job_id AmIOWltRbJnpJE-m2kGt6Q _model_server_result.datetime_utc '2024-12-27 03:44:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8csg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 8CSG # _exptl.entry_id 8CSG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.334 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-DEOXY-5'-METHYLTHIOADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CSG _cell.length_a 100.662 _cell.length_b 137.181 _cell.length_c 177.89 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CSG _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C11 H15 N5 O3 S' _chem_comp.formula_weight 297.334 _chem_comp.id MTA _chem_comp.mon_nstd_flag . _chem_comp.name "5'-DEOXY-5'-METHYLTHIOADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CS S5' MTA sing 246 n n CS HCS1 MTA sing 247 n n CS HCS2 MTA sing 248 n n CS HCS3 MTA sing 249 n n S5' C5' MTA sing 250 n n C5' C4' MTA sing 251 n n C5' "H5'1" MTA sing 252 n n C5' "H5'2" MTA sing 253 n n C4' O4' MTA sing 254 n n C4' C3' MTA sing 255 n n C4' H4' MTA sing 256 n n O4' C1' MTA sing 257 n n C2' O2' MTA sing 258 n n C2' C3' MTA sing 259 n n C2' C1' MTA sing 260 n n C2' H2' MTA sing 261 n n O2' HO2' MTA sing 262 n n C3' O3' MTA sing 263 n n C3' H3' MTA sing 264 n n O3' H3T MTA sing 265 n n C1' N9 MTA sing 266 n n C1' H1' MTA sing 267 n n N9 C8 MTA sing 268 n y N9 C4 MTA sing 269 n y C8 N7 MTA doub 270 n y C8 H8 MTA sing 271 n n N7 C5 MTA sing 272 n y C5 C6 MTA sing 273 n y C5 C4 MTA doub 274 n y C6 N6 MTA sing 275 n n C6 N1 MTA doub 276 n y N6 H61 MTA sing 277 n n N6 H62 MTA sing 278 n n N1 C2 MTA sing 279 n y C2 N3 MTA doub 280 n y C2 H2 MTA sing 281 n n N3 C4 MTA sing 282 n y # _atom_sites.entry_id 8CSG _atom_sites.fract_transf_matrix[1][1] 0.009934 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00729 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005621 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 PWL A 1 701 1 PWL INX . D 4 MTA A 1 702 1 MTA MTA . E 5 PEG A 1 703 2 PEG PEG . F 6 EDO A 1 704 3 EDO EDO . G 5 PEG A 1 705 4 PEG PEG . H 5 PEG A 1 706 5 PEG PEG . I 6 EDO A 1 707 7 EDO EDO . J 7 HOH A 1 801 28 HOH HOH . J 7 HOH A 2 802 14 HOH HOH . J 7 HOH A 3 803 10 HOH HOH . J 7 HOH A 4 804 161 HOH HOH . J 7 HOH A 5 805 186 HOH HOH . J 7 HOH A 6 806 12 HOH HOH . J 7 HOH A 7 807 101 HOH HOH . J 7 HOH A 8 808 217 HOH HOH . J 7 HOH A 9 809 64 HOH HOH . J 7 HOH A 10 810 60 HOH HOH . J 7 HOH A 11 811 213 HOH HOH . J 7 HOH A 12 812 6 HOH HOH . J 7 HOH A 13 813 141 HOH HOH . J 7 HOH A 14 814 138 HOH HOH . J 7 HOH A 15 815 67 HOH HOH . J 7 HOH A 16 816 199 HOH HOH . J 7 HOH A 17 817 87 HOH HOH . J 7 HOH A 18 818 195 HOH HOH . J 7 HOH A 19 819 110 HOH HOH . J 7 HOH A 20 820 74 HOH HOH . J 7 HOH A 21 821 79 HOH HOH . J 7 HOH A 22 822 135 HOH HOH . J 7 HOH A 23 823 149 HOH HOH . J 7 HOH A 24 824 26 HOH HOH . J 7 HOH A 25 825 43 HOH HOH . J 7 HOH A 26 826 156 HOH HOH . J 7 HOH A 27 827 129 HOH HOH . J 7 HOH A 28 828 201 HOH HOH . J 7 HOH A 29 829 207 HOH HOH . J 7 HOH A 30 830 29 HOH HOH . J 7 HOH A 31 831 42 HOH HOH . J 7 HOH A 32 832 2 HOH HOH . J 7 HOH A 33 833 97 HOH HOH . J 7 HOH A 34 834 209 HOH HOH . J 7 HOH A 35 835 145 HOH HOH . J 7 HOH A 36 836 125 HOH HOH . J 7 HOH A 37 837 9 HOH HOH . J 7 HOH A 38 838 30 HOH HOH . J 7 HOH A 39 839 17 HOH HOH . J 7 HOH A 40 840 1 HOH HOH . J 7 HOH A 41 841 111 HOH HOH . J 7 HOH A 42 842 16 HOH HOH . J 7 HOH A 43 843 118 HOH HOH . J 7 HOH A 44 844 66 HOH HOH . J 7 HOH A 45 845 32 HOH HOH . J 7 HOH A 46 846 81 HOH HOH . J 7 HOH A 47 847 137 HOH HOH . J 7 HOH A 48 848 76 HOH HOH . J 7 HOH A 49 849 59 HOH HOH . J 7 HOH A 50 850 175 HOH HOH . J 7 HOH A 51 851 170 HOH HOH . J 7 HOH A 52 852 133 HOH HOH . J 7 HOH A 53 853 46 HOH HOH . J 7 HOH A 54 854 80 HOH HOH . J 7 HOH A 55 855 159 HOH HOH . J 7 HOH A 56 856 37 HOH HOH . J 7 HOH A 57 857 185 HOH HOH . J 7 HOH A 58 858 21 HOH HOH . J 7 HOH A 59 859 222 HOH HOH . J 7 HOH A 60 860 224 HOH HOH . J 7 HOH A 61 861 68 HOH HOH . J 7 HOH A 62 862 128 HOH HOH . J 7 HOH A 63 863 205 HOH HOH . J 7 HOH A 64 864 187 HOH HOH . J 7 HOH A 65 865 63 HOH HOH . J 7 HOH A 66 866 82 HOH HOH . J 7 HOH A 67 867 164 HOH HOH . J 7 HOH A 68 868 94 HOH HOH . J 7 HOH A 69 869 172 HOH HOH . J 7 HOH A 70 870 70 HOH HOH . J 7 HOH A 71 871 182 HOH HOH . J 7 HOH A 72 872 210 HOH HOH . J 7 HOH A 73 873 216 HOH HOH . J 7 HOH A 74 874 134 HOH HOH . J 7 HOH A 75 875 55 HOH HOH . J 7 HOH A 76 876 23 HOH HOH . J 7 HOH A 77 877 18 HOH HOH . J 7 HOH A 78 878 61 HOH HOH . J 7 HOH A 79 879 47 HOH HOH . J 7 HOH A 80 880 178 HOH HOH . J 7 HOH A 81 881 58 HOH HOH . J 7 HOH A 82 882 13 HOH HOH . J 7 HOH A 83 883 86 HOH HOH . J 7 HOH A 84 884 106 HOH HOH . J 7 HOH A 85 885 176 HOH HOH . J 7 HOH A 86 886 65 HOH HOH . J 7 HOH A 87 887 160 HOH HOH . J 7 HOH A 88 888 11 HOH HOH . J 7 HOH A 89 889 179 HOH HOH . J 7 HOH A 90 890 100 HOH HOH . J 7 HOH A 91 891 34 HOH HOH . J 7 HOH A 92 892 165 HOH HOH . J 7 HOH A 93 893 89 HOH HOH . J 7 HOH A 94 894 158 HOH HOH . J 7 HOH A 95 895 123 HOH HOH . J 7 HOH A 96 896 51 HOH HOH . J 7 HOH A 97 897 120 HOH HOH . J 7 HOH A 98 898 36 HOH HOH . J 7 HOH A 99 899 57 HOH HOH . J 7 HOH A 100 900 122 HOH HOH . J 7 HOH A 101 901 50 HOH HOH . J 7 HOH A 102 902 41 HOH HOH . J 7 HOH A 103 903 163 HOH HOH . J 7 HOH A 104 904 130 HOH HOH . J 7 HOH A 105 905 190 HOH HOH . J 7 HOH A 106 906 84 HOH HOH . J 7 HOH A 107 907 157 HOH HOH . J 7 HOH A 108 908 22 HOH HOH . J 7 HOH A 109 909 3 HOH HOH . J 7 HOH A 110 910 202 HOH HOH . J 7 HOH A 111 911 144 HOH HOH . J 7 HOH A 112 912 7 HOH HOH . J 7 HOH A 113 913 212 HOH HOH . J 7 HOH A 114 914 200 HOH HOH . J 7 HOH A 115 915 206 HOH HOH . J 7 HOH A 116 916 27 HOH HOH . J 7 HOH A 117 917 171 HOH HOH . J 7 HOH A 118 918 140 HOH HOH . J 7 HOH A 119 919 102 HOH HOH . J 7 HOH A 120 920 96 HOH HOH . J 7 HOH A 121 921 174 HOH HOH . J 7 HOH A 122 922 53 HOH HOH . J 7 HOH A 123 923 104 HOH HOH . J 7 HOH A 124 924 91 HOH HOH . J 7 HOH A 125 925 124 HOH HOH . J 7 HOH A 126 926 173 HOH HOH . J 7 HOH A 127 927 99 HOH HOH . J 7 HOH A 128 928 107 HOH HOH . J 7 HOH A 129 929 20 HOH HOH . J 7 HOH A 130 930 196 HOH HOH . J 7 HOH A 131 931 194 HOH HOH . J 7 HOH A 132 932 52 HOH HOH . J 7 HOH A 133 933 132 HOH HOH . J 7 HOH A 134 934 221 HOH HOH . J 7 HOH A 135 935 191 HOH HOH . J 7 HOH A 136 936 183 HOH HOH . J 7 HOH A 137 937 169 HOH HOH . J 7 HOH A 138 938 93 HOH HOH . J 7 HOH A 139 939 180 HOH HOH . J 7 HOH A 140 940 220 HOH HOH . J 7 HOH A 141 941 211 HOH HOH . J 7 HOH A 142 942 72 HOH HOH . J 7 HOH A 143 943 223 HOH HOH . J 7 HOH A 144 944 139 HOH HOH . J 7 HOH A 145 945 218 HOH HOH . J 7 HOH A 146 946 192 HOH HOH . J 7 HOH A 147 947 4 HOH HOH . J 7 HOH A 148 948 155 HOH HOH . J 7 HOH A 149 949 215 HOH HOH . J 7 HOH A 150 950 166 HOH HOH . J 7 HOH A 151 951 208 HOH HOH . J 7 HOH A 152 952 148 HOH HOH . J 7 HOH A 153 953 214 HOH HOH . J 7 HOH A 154 954 147 HOH HOH . J 7 HOH A 155 955 167 HOH HOH . J 7 HOH A 156 956 219 HOH HOH . J 7 HOH A 157 957 203 HOH HOH . J 7 HOH A 158 958 168 HOH HOH . K 7 HOH B 1 401 88 HOH HOH . K 7 HOH B 2 402 90 HOH HOH . K 7 HOH B 3 403 5 HOH HOH . K 7 HOH B 4 404 48 HOH HOH . K 7 HOH B 5 405 77 HOH HOH . K 7 HOH B 6 406 105 HOH HOH . K 7 HOH B 7 407 181 HOH HOH . K 7 HOH B 8 408 75 HOH HOH . K 7 HOH B 9 409 127 HOH HOH . K 7 HOH B 10 410 227 HOH HOH . K 7 HOH B 11 411 71 HOH HOH . K 7 HOH B 12 412 177 HOH HOH . K 7 HOH B 13 413 62 HOH HOH . K 7 HOH B 14 414 44 HOH HOH . K 7 HOH B 15 415 152 HOH HOH . K 7 HOH B 16 416 78 HOH HOH . K 7 HOH B 17 417 225 HOH HOH . K 7 HOH B 18 418 188 HOH HOH . K 7 HOH B 19 419 197 HOH HOH . K 7 HOH B 20 420 31 HOH HOH . K 7 HOH B 21 421 38 HOH HOH . K 7 HOH B 22 422 8 HOH HOH . K 7 HOH B 23 423 39 HOH HOH . K 7 HOH B 24 424 15 HOH HOH . K 7 HOH B 25 425 189 HOH HOH . K 7 HOH B 26 426 98 HOH HOH . K 7 HOH B 27 427 108 HOH HOH . K 7 HOH B 28 428 73 HOH HOH . K 7 HOH B 29 429 117 HOH HOH . K 7 HOH B 30 430 226 HOH HOH . K 7 HOH B 31 431 35 HOH HOH . K 7 HOH B 32 432 151 HOH HOH . K 7 HOH B 33 433 153 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CS MTA . . . D 4 -28.697 -38.292 -6.019 1 41.74 ? CS MTA 702 A 1 HETATM 2 S S5' MTA . . . D 4 -30.054 -39.383 -6.244 1 45.18 ? S5' MTA 702 A 1 HETATM 3 C C5' MTA . . . D 4 -31.393 -38.26 -6.332 1 36.69 ? C5' MTA 702 A 1 HETATM 4 C C4' MTA . . . D 4 -31.629 -37.428 -5.073 1 39.24 ? C4' MTA 702 A 1 HETATM 5 O O4' MTA . . . D 4 -32.948 -36.868 -4.944 1 35.05 ? O4' MTA 702 A 1 HETATM 6 C C2' MTA . . . D 4 -33.23 -38.104 -3.133 1 32.73 ? C2' MTA 702 A 1 HETATM 7 O O2' MTA . . . D 4 -33.256 -38.083 -1.706 1 38.8 ? O2' MTA 702 A 1 HETATM 8 C C3' MTA . . . D 4 -31.872 -38.284 -3.777 1 36.92 ? C3' MTA 702 A 1 HETATM 9 O O3' MTA . . . D 4 -30.826 -37.938 -2.863 1 34.6 ? O3' MTA 702 A 1 HETATM 10 C C1' MTA . . . D 4 -33.515 -36.759 -3.678 1 30.56 ? C1' MTA 702 A 1 HETATM 11 N N9 MTA . . . D 4 -34.926 -36.462 -3.886 1 24.99 ? N9 MTA 702 A 1 HETATM 12 C C8 MTA . . . D 4 -35.82 -37.192 -4.566 1 27.19 ? C8 MTA 702 A 1 HETATM 13 N N7 MTA . . . D 4 -37.039 -36.596 -4.532 1 33.08 ? N7 MTA 702 A 1 HETATM 14 C C5 MTA . . . D 4 -36.903 -35.47 -3.817 1 26.7 ? C5 MTA 702 A 1 HETATM 15 C C6 MTA . . . D 4 -37.782 -34.362 -3.408 1 27.65 ? C6 MTA 702 A 1 HETATM 16 N N6 MTA . . . D 4 -39.083 -34.367 -3.771 1 33.78 ? N6 MTA 702 A 1 HETATM 17 N N1 MTA . . . D 4 -37.24 -33.358 -2.68 1 29.34 ? N1 MTA 702 A 1 HETATM 18 C C2 MTA . . . D 4 -35.925 -33.339 -2.326 1 32.68 ? C2 MTA 702 A 1 HETATM 19 N N3 MTA . . . D 4 -35.069 -34.33 -2.663 1 29.94 ? N3 MTA 702 A 1 HETATM 20 C C4 MTA . . . D 4 -35.5 -35.384 -3.399 1 24.85 ? C4 MTA 702 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 20 #